BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937635
Length=1229
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 579 3e-164
AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase fa... 416 2e-115
AT3G48840.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 390 1e-107
AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 342 4e-93
AT5G40275.1 | Symbols: | other RNA | chr5:16098190-16100051 RE... 217 3e-55
AT3G10845.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 154 2e-36
> AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16670001-16674966 REVERSE LENGTH=2268
Length=2268
Score = 579 bits (313), Expect = 3e-164
Identities = 566/682 (83%), Gaps = 42/682 (6%)
Strand=Plus/Plus
Query 419 TGTTGAGGCAGTTGCCTTAA-GAGAAAAGGTGCTCTTTGTTGCGCATCTTTCTCGCCAAA 477
|||||||||||||| | ||| || ||||| |||||||||||| ||||| || ||| |||
Sbjct 1336 TGTTGAGGCAGTTGGCGTAAGGA-AAAAGACGCTCTTTGTTGCCCATCTCTCACGCAAAA 1394
Query 478 CTAAAATATCACATATCATCAATTTCTTCAAAGATGTTGGCCAAGTTGTTCATGTCCGAC 537
|| ||||| | |||||||| |||||||||||||||||||| ||||||||||||| || |
Sbjct 1395 CTGAAATAACGCATATCATAAATTTCTTCAAAGATGTTGGAGAAGTTGTTCATGTTCGGC 1454
Query 538 TTATTGTAGACCA-AAAGGGCAAGCATGCT-GGCCATGGCTTTGTTGAGTTTACTTCTGC 595
||||| || |||| | | |||||||||| | ||| || |||||| |||||| ||||||
Sbjct 1455 TTATTCTAAACCACACA-GGCAAGCATG-TGGGCTGTGCCTTTGTAGAGTTTGGTTCTGC 1512
Query 596 TGACGAAGCAAAGAAGGCGCTGGAAAAGAAGAATGGAGAATATTT-ACACGATCGCGAGA 654
| |||||||||||| |||| |||||| ||| || || |||||||| | ||||| || |||
Sbjct 1513 TAACGAAGCAAAGATGGCGTTGGAAACGAAAAACGGTGAATATTTGA-ACGATTGCAAGA 1571
Query 655 TTTATCTTG-ATTCGGTTAAGACAGCTCCATACCGTCCA--C--G----G----C--C-C 698
||| ||||| | | || ||||| | |||||||| |||| | | | | | |
Sbjct 1572 TTTTTCTTGAAGT-GGCTAAGATGGTTCCATACCCTCCACCCAAGTATTGCATACATCAC 1630
Query 699 AA------GTACGAAGACTACCTTCGACGAGAAAGCCGTCTGATAGATGAAGATGAGGCA 752
|| ||||||||||||||||||||||||||||| ||||||||| ||| ||||| ||
Sbjct 1631 AAGGTTTGGTACGAAGACTACCTTCGACGAGAAAGCCTTCTGATAGAAGAAAATGAGACA 1690
Query 753 GTGGAAGGACTTGATGATGAAACTCCCGAGT-TTGTTGAGGAAGTTGCCGTAAGAAAGAA 811
| |||||||| | |||||| ||||||| | ||||||||||| ||||||||||||| ||
Sbjct 1691 GAGGAAGGAC-T--TGATGACACTCCCG-CTCTTGTTGAGGAATTTGCCGTAAGAAAAAA 1746
Query 812 GACGCT-TTTCATTGCCAATCTCTCTTTCAAAACTAAAATATCAGATATCGTCAA-TTTC 869
|||||| ||| ||||||||||||| || ||||||||||||| ||||| |||| |||
Sbjct 1747 GACGCTCTTT-GTTGCCAATCTCTCACCCAGAACTAAAATATCACATATCATCAAGTTT- 1804
Query 870 TTCAAAGATGTTGGAGAAGTTTTTCGTGTTAGACTTATTGTAAACCACATGGGTGAGCAT 929
|| |||||||||| ||||||| |||||||| |||||||||||||||||| ||||||||||
Sbjct 1805 TTTAAAGATGTTGCAGAAGTTGTTCGTGTTCGACTTATTGTAAACCACAGGGGTGAGCAT 1864
Query 930 GTGGGCTGTGGCTTTGTTGAATTTTCTTCTGCTAACGAAGCAAAGAAGGCGCTGCAAAAG 989
|||||||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||
Sbjct 1865 GTGGGCTGTGGCTTTGTTGAGTTTGCTTCTGTTAACGAAGCACAGAAGGCGCTGCAAAAG 1924
Query 990 AAGAATGGTGAAAAATTGCGCTTTCG-GTATATTTTTCTTGACGAGGCTGAGATAGCTCC 1048
| |||||||||||| |||||| ||| | | ||||||||||||| || |||| |||||||
Sbjct 1925 ATGAATGGTGAAAATTTGCGCAGTCGTG-AGATTTTTCTTGACGTGGTTGAGTTAGCTCC 1983
Query 1049 ATACCCTCTCCGACCCAAGTAC 1070
||||||||||||||||||||||
Sbjct 1984 ATACCCTCTCCGACCCAAGTAC 2005
Score = 315 bits (170), Expect = 9e-85
Identities = 506/656 (77%), Gaps = 72/656 (11%)
Strand=Plus/Plus
Query 450 CTCTTTGTTGCGC-ATCTTTCTCGC-CAAACTAAAATATCACATATCATCAATTTCTTCA 507
||||||||||| | ||||||||| | ||||||||||||||| ||||| || |||||||||
Sbjct 998 CTCTTTGTTGC-CAATCTTTCTC-CTCAAACTAAAATATCAGATATCTTCGATTTCTTCA 1055
Query 508 A-AGATGTTGGCCAAGTTGTTCA-TGTCCGACTTATTGTAGACCA-AAAGGGCAAGCATG 564
| | |||||| |||||| | | | | |||||||| ||| |||| || || |||||||
Sbjct 1056 ATTG-TGTTGGAGAAGTTG-TAAGTATTCGACTTATGGTAAACCATGAA-GGTAAGCATG 1112
Query 565 CT-GGCCATGGCTTTGTTGAGTTTACTTCTGCTGACGAAGCAAAGAAGGCGCTGGAAAAG 623
| || ||||||||||||||||| |||||||||||||| |||| ||||| ||||| ||
Sbjct 1113 -TGGGTTATGGCTTTGTTGAGTTTGCTTCTGCTGACGAAACAAAAAAGGCACTGGAGAAC 1171
Query 624 AAGAATGGAGAATATTTACACGATCGCGAGATTTATCTTGAT-TCGGTTAAGACAGCTCC 682
|||||||| |||||||| ||||||| |||||| | ||||| | || ||||||||||||
Sbjct 1172 AAGAATGGTGAATATTTGCACGATCATAAGATTTTTATTGATGT-GGCTAAGACAGCTCC 1230
Query 683 ATACCGTCC---A--C--G-GC--CC--------AA-----G-TACGAAGACTACCTTCG 718
||||| ||| | | | | || || | |||||||||||||||||
Sbjct 1231 ATACCCTCCAGGACCCAAGTACAACCTTGTAGAGAAGCTTTGTTACGAAGACTACCTTCG 1290
Query 719 ACGAGAAAGCCGTCTGATAGATGAAGATGAGGCAGTGGAAGGACTTGATGATGAAACTCC 778
||||||||||| || |||||||||||||||| || | ||||
Sbjct 1291 ACGAGAAAGCCTTCCGATAGATGAAGATGAGACA---------C------------CTCC 1329
Query 779 CGAGTTTGTTGAGGAAGTTGCCGTAAG-AAAGAAGACGCT-TTTCATTGCCAATCTCTCT 836
|| |||||||||| ||||| |||||| ||| |||||||| ||| ||||| |||||||
Sbjct 1330 TGAATTTGTTGAGGCAGTTGGCGTAAGGAAA-AAGACGCTCTTTG-TTGCCCATCTCTCA 1387
Query 837 TTCAAAACTAAAATATCAG-ATATCGTCAATTTCTTCAAAGATGTTGGAGAAGTTTTTCG 895
||||||| ||||| | | ||||| | ||||||||||||||||||||||||||| |||
Sbjct 1388 CGCAAAACTGAAATAAC-GCATATCATAAATTTCTTCAAAGATGTTGGAGAAGTTGTTCA 1446
Query 896 TGTTAGACTTATTGTAAACCACATGGGTGAGCATGTGGGCTGTGGCTTTGTTGAATTTTC 955
|||| | |||||| ||||||||| || ||||||||||||||| |||||| || |||
Sbjct 1447 TGTTCGGCTTATTCTAAACCACACAGGCAAGCATGTGGGCTGTGCCTTTGTAGAGTTTGG 1506
Query 956 TTCTGCTAACGAAGCAAAGAAGGCGCTGCAAAAGAAGAATGGTGAAAAATTG--CGCTTT 1013
|||||||||||||||||||| |||| || ||| ||| || |||||| | ||| || ||
Sbjct 1507 TTCTGCTAACGAAGCAAAGATGGCGTTGGAAACGAAAAACGGTGAATATTTGAACGATTG 1566
Query 1014 CGGTATATTTTTCTTGACGAGGCTGAGATAGCTCCATACCCTCTCCGACCCAAGTA 1069
| | ||||||||||| | |||| |||| | ||||||||||| | |||||||||
Sbjct 1567 CA--AGATTTTTCTTGAAGTGGCTAAGATGGTTCCATACCCTC-C--ACCCAAGTA 1617
Score = 241 bits (130), Expect = 2e-62
Identities = 180/204 (88%), Gaps = 4/204 (2%)
Strand=Plus/Plus
Query 54 TTCGATTTCTTCAA-TGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCCCGA 112
|||||||||||||| || ||||||||||||||| ||| |||||||||| ||||||| ||
Sbjct 1043 TTCGATTTCTTCAATTG-TGTTGGAGAAGTTGTAAGTATTCGACTTATGGTAAACCATGA 1101
Query 113 GGGTAAGCATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTCCTTG-CTTAGCAAACATGG 171
|||||||||||||| |||||||||||||||||||||||| | || | | |||| | ||
Sbjct 1102 AGGTAAGCATGTGGGTTATGGCTTTGTTGAGTTTGCTTCTGC-TGACGAAACAAAAAAGG 1160
Query 172 CGCTGGAAAAGAAGAATGGTGAATATTTGCACGATCATAAGATTTTTCTTGGTGTGGCTA 231
| ||||| || |||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1161 CACTGGAGAACAAGAATGGTGAATATTTGCACGATCATAAGATTTTTATTGATGTGGCTA 1220
Query 232 AGACAGCTCCAGACCCTCCACGAC 255
||||||||||| |||||||| |||
Sbjct 1221 AGACAGCTCCATACCCTCCAGGAC 1244
> AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase
family protein / RNA recognition motif (RRM)-containing protein
| chr3:18103152-18110216 FORWARD LENGTH=2766
Length=2766
Score = 416 bits (225), Expect = 2e-115
Identities = 236/241 (98%), Gaps = 2/241 (1%)
Strand=Plus/Plus
Query 15 TTTTCCATGACTGATATTTTATCCTTCCACTTTTACAGATTCGATTTCTTCAATGATGTT 74
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2176 TTTTCCATGACTGATATTTTATCCTTCCACTTTTACAGACTCGATTTCTTCAATGATGTT 2235
Query 75 GGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCCCGAGGGTAAGCATGTGGGCTATGGC 134
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 2236 GGAGAAGTTGTTAGTGTTCGACTTATTGTAAGCCCCGAGAGTAAGCATGTGGGCTATGGC 2295
Query 135 TTTGTTGAGTTTGCTTCTCCTTGCTTAGCAAACATGGCGCTGGAAAAGAAGAATGGTGAA 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2296 TTTGTTGAGTTTGCTTCTCCTTGCTTAGCAAACATGGCGCTGGAAAAGAAGAATGGTGAA 2355
Query 195 TATTTGCACGATCATAAGATTTTTCTTGGTGTGGCTAAGACAGCTCCAG-ACCCTCCACG 253
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 2356 TATTTGCACGATCATAAGATTTTTCTTGGTGTGGCTAAGACAGCTCC-GTACCCTCCACG 2414
Query 254 A 254
|
Sbjct 2415 A 2415
Score = 355 bits (192), Expect = 5e-97
Identities = 224/240 (93%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 373 TAGAAGAAGATGAGACAGTGGAAGGACTTGATGAAACTCCCAGTTGTGTTGAGGCAGTTG 432
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2480 TAGAAGAAGATGAGACAGTGGAAGGACTTGATGAAACTCCTAGTTGTGTTGAGGCAGTTG 2539
Query 433 CCTTAAGAGAAAAGGTGCTCTTTGTTGCGCATCTTTCTCGCCAAACTAAAATATCACATA 492
|||||||||||||||||||| || |||||||| | |||||| ||| |||||||||||||
Sbjct 2540 CCTTAAGAGAAAAGGTGCTCATTATTGCGCATGTCCCTCGCCGAACAAAAATATCACATA 2599
Query 493 TCATCAATTTCTTCAAAGATGTTGGCCAAGTTGTTCATGTCCGACTTATTGTAGACCAAA 552
||||| ||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||
Sbjct 2600 TCATCGATTTCTTCAAAGATGCTGGACAAGTTGTTAATGTCCGACTTATTGTAGACCAAA 2659
Query 553 AGGGCAAGCATGCTGGCCATGGCTTTGTTGAGTTTACTTCTGCTGACGAAGCAAAGAAGG 612
||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2660 AGGGCAAGCCTTTTGGCCGTGGCTTTGTTGAGTTTACTTCTGCTGACGAAGCAAAGAAGG 2719
Score = 156 bits (84), Expect = 6e-37
Identities = 158/194 (81%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 865 ATTTCTTCAAAGATGTTGGAGAAGTTTTTCGTGTTAGACTTATTGTAAACCAC-ATGGGT 923
|||||||||| ||||||||||||||| || ||||| |||||||||||| || | | | ||
Sbjct 2219 ATTTCTTCAATGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAGCCCCGA-GAGT 2277
Query 924 GAGCATGTGGGCTGTGGCTTTGTTGAATTTTCTTCTGCTAACGAAGCAAAGAAGGCGCTG 983
|||||||||||| |||||||||||| ||| ||||| || | |||||| | |||||||
Sbjct 2278 AAGCATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTCCTTGCTTAGCAAACATGGCGCTG 2337
Query 984 CAAAAGAAGAATGGTGAAAAATTGCGCTTTCGGT-ATATTTTTCTTGACGAGGCTGAGAT 1042
||||||||||||||||| | |||| | || | | |||||||||| | |||| |||
Sbjct 2338 GAAAAGAAGAATGGTGAATATTTGCACGATC-ATAAGATTTTTCTTGGTGTGGCTAAGAC 2396
Query 1043 AGCTCCATACCCTC 1056
|||||| |||||||
Sbjct 2397 AGCTCCGTACCCTC 2410
Score = 130 bits (70), Expect = 3e-29
Identities = 238/317 (75%), Gaps = 19/317 (6%)
Strand=Plus/Plus
Query 803 AAGAAAGAAGACGCT-TTTCATTGCCAATCTCTCTTTCAAAACTAAAATATCAGATATCG 861
|||||| |||||||| | | ||| | |||| || | | |||||||| ||||||||
Sbjct 1803 AAGAAAAAAGACGCTCTATGTTTG-CTGTCTCCCTCGCGACACTAAAATGCCAGATATCA 1861
Query 862 TCAATTTCTTCAAAGATGTTGGAGAAGTTTTTCGTGTT-AGACTTATTGTAAACCACATG 920
|| |||||||||||||||||||| ||||| || ||||| | ||||| | ||| | ||
Sbjct 1862 TCGATTTCTTCAAAGATGTTGGACAAGTTGTTAGTGTTCA-ACTTACTACAAAACGCAAC 1920
Query 921 GGTGAGCATGTGGGCTGTGGCTTTGTTGAATTTTCTTCTGCTAACGAAGCAAAGAAGGCG 980
||| || | || | |||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct 1921 GGTTTGCGTTTGTCCACTGGCTTCGTTGAGTTTGCTTCTGCTAACGAAGCAAAGAAGGCG 1980
Query 981 CTGCAAAAGAAGAATGGTGAAAAATTGCGCTTTCGGTA-TAT--TT-TTCTTGACGA-GG 1035
||| | | ||||||||||||| | ||| | | |||| || || |||||| | | ||
Sbjct 1981 CTGGATATGAAGAATGGTGAATATTTGTG-T---GGTAATAAGCTTATTCTTGGC-ATGG 2035
Query 1036 CTGAGATAGCTCCA-TACCCTCTCCGACCCAAGTACGAAGAGTACCTTCTACGAGATAGC 1094
|| || | || | || | | ||||||||||||||| ||| ||| || ||| |||
Sbjct 2036 CT-AGCT-GCGAAAATATTG-CACA-ACCCAAGTACGAAGACTACATTCAACAAGAAAGC 2091
Query 1095 CTTCTGATAGAAGAAGA 1111
|||| ||| ||||||||
Sbjct 2092 CTTCCGATTGAAGAAGA 2108
Score = 63.9 bits (34), Expect = 3e-09
Identities = 41/44 (93%), Gaps = 2/44 (5%)
Strand=Plus/Plus
Query 384 GAGACAGTGGAAGGACTTGATGAAACTCCC-AGTTGTGTTGAGG 426
|||||||||||||||||||||||||||||| | || ||||||||
Sbjct 1714 GAGACAGTGGAAGGACTTGATGAAACTCCCGA-TTCTGTTGAGG 1756
> AT3G48840.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:18112721-18114070 REVERSE LENGTH=570
Length=570
Score = 390 bits (211), Expect = 1e-107
Identities = 328/382 (86%), Gaps = 18/382 (5%)
Strand=Plus/Plus
Query 701 GTACGAAGACTACCTTCGACGAGAAAGCCGTCTGATAGATGAAGATGAGGCAGTGGAAGG 760
|||||||||||||||||||| ||||| |||||||||||| ||||||||| ||||||||||
Sbjct 6 GTACGAAGACTACCTTCGACAAGAAAACCGTCTGATAGAAGAAGATGAGACAGTGGAAGG 65
Query 761 ACTTGATGATGAAACTCCCGA----G-TT-TGTTGAGGAAGTTGCCGTAAGAAAGAAGAC 814
||||||||| | |||||||| | || | ||||||||||||| |||||||| |||||
Sbjct 66 ACTTGATGA-G--ACTCCCGATTCCGATTATCTTGAGGAAGTTGCTGTAAGAAAAAAGAC 122
Query 815 GCT-TTTCATTGCCAATCTCTCTTTCAAAACTAAAATATCAGATATCGTCAATTTCTTCA 873
||| ||| |||||||||||| |||| |||| | |||| || ||||| ||||||||||||
Sbjct 123 GCTCTTT-ATTGCCAATCTCCCTTTGAAAAGTGAAATGCCACATATCATCAATTTCTTCA 181
Query 874 AAGATGTTGGAGAAGTTTTTCGTGTTAGACTTATTGTAAACCACATGGGTGAGCATGTGG 933
|||||||||||||||| || ||||| ||||||||||| |||||| |||| |||||||||
Sbjct 182 GAGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAGACCACAGGGGTAAGCATGTGG 241
Query 934 GCTGTGGCTTTGTTGAATTTTCTTCTGCTAACGAAGCAAAGAA-G-G-CGCTGCAAAAGA 990
|||||||||||||||| ||| |||||||| || |||||||||| | | ||||| ||||||
Sbjct 242 GCTGTGGCTTTGTTGAGTTTGCTTCTGCTTACAAAGCAAAGAAGGCGCCGCTGGAAAAGA 301
Query 991 AGAATGGTGAA-AA-ATTGCGCTTTCGGTATATTTTTCTTGACGAGGCTGAGATAGCTCC 1048
|||| | || || |||||| ||| ||| || ||||||||| |||||||||||||||
Sbjct 302 AGAA-CCT-AAGAAGATTGCGGAATCGTTATGTTGTTCTTGACGTGGCTGAGATAGCTCC 359
Query 1049 ATACCCTCTCCGACCCAAGTAC 1070
||||||||||||||||||||||
Sbjct 360 ATACCCTCTCCGACCCAAGTAC 381
Score = 220 bits (119), Expect = 2e-56
Identities = 223/270 (83%), Gaps = 19/270 (7%)
Strand=Plus/Plus
Query 373 TAGAAGAAGATGAGACAGTGGAAGGACTTGATGAAACTCCC-A----G-TTGTGTTGAGG 426
|||||||||||||||||||||||||||||||||| |||||| | | || | ||||||
Sbjct 41 TAGAAGAAGATGAGACAGTGGAAGGACTTGATGAGACTCCCGATTCCGATTATCTTGAGG 100
Query 427 CAGTTGCCT-TAAGAGAAAAGGTGCTCTTTGTTGCGCA-TCTTTCTC-GCCAAACTAAAA 483
|||||| | ||||| ||||| ||||||| |||| || ||| || | ||| | |||
Sbjct 101 AAGTTGC-TGTAAGAAAAAAGACGCTCTTTATTGC-CAATCTCCCTTTGA-AAAGTGAAA 157
Query 484 TATCACATATCATCAATTTCTTCAAAGATGTTGGCCAAGTTGTTCA-TGTCCGACTTATT 542
| ||||||||||||||||||||| ||||||||| |||||||| | ||| |||||||||
Sbjct 158 TGCCACATATCATCAATTTCTTCAGAGATGTTGGAGAAGTTGTT-AGTGTTCGACTTATT 216
Query 543 GTAGACCAAAAGGGCAAGCATGCTGGCCA-TGGCTTTGTTGAGTTTACTTCTGCTGACGA 601
|||||||| | ||| ||||||| ||| | |||||||||||||||| |||||||| || |
Sbjct 217 GTAGACCACAGGGGTAAGCATG-TGGGCTGTGGCTTTGTTGAGTTTGCTTCTGCTTACAA 275
Query 602 AGCAAAGAAGGCGC---TGGAAAAGAAGAA 628
|||||||||||||| |||||||||||||
Sbjct 276 AGCAAAGAAGGCGCCGCTGGAAAAGAAGAA 305
Score = 158 bits (85), Expect = 2e-37
Identities = 165/201 (82%), Gaps = 15/201 (7%)
Strand=Plus/Plus
Query 58 ATTTCTTCA-ATGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCCCGAGGG- 115
||||||||| | |||||||||||||||||||||||||||||||||||| ||| | ||||
Sbjct 173 ATTTCTTCAGA-GATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAGACCAC-AGGGG 230
Query 116 TAAGCATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTCCTTGCTTAGCAAACATGGCGC- 174
|||||||||||||| |||||||||||||||||||||| ||| | |||||| | |||||
Sbjct 231 TAAGCATGTGGGCTGTGGCTTTGTTGAGTTTGCTTCTGCTTACAAAGCAAAGAAGGCGCC 290
Query 175 --TGGAAAAGAAGAA--TGGTGAATATTTGCACGA-TCATAA-GATTTTTCTTGGTGTGG 228
||||||||||||| | ||| ||| || || || | | | || |||||| ||||
Sbjct 291 GCTGGAAAAGAAGAACCTAA-GAAGATT-GCG-GAATCGTTATG-TTGTTCTTGACGTGG 346
Query 229 CTAAGACAGCTCCAGACCCTC 249
|| ||| ||||||| ||||||
Sbjct 347 CTGAGATAGCTCCATACCCTC 367
> AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:17050631-17052189 FORWARD LENGTH=1494
Length=1494
Score = 342 bits (185), Expect = 4e-93
Identities = 493/633 (78%), Gaps = 56/633 (9%)
Strand=Plus/Plus
Query 403 ATGAAACTCCCAGTTGTGTTGAGGCAGTTGCCTTAAGAGAAAAGGTGCTCTTTGTTGCGC 462
||||| |||| ||| || ||||| || |||| ||| | |||| |||||||||||| |
Sbjct 701 ATGAATCTCCTGGTTTTGCTGAGGAAGCTGCCATAACA-AAAA--CGCTCTTTGTTGC-C 756
Query 463 -ATCTTTC-TCG-C-CAAACTAAAATATCACATATCATCAATTTCTTCAAAGATGTTGGC 518
||| | | | | | | | | | |||||| ||||||||||||||||||||||||||||
Sbjct 757 AATC-TCCGT-GACTC-CATTCAGATATCAGATATCATCAATTTCTTCAAAGATGTTGGA 813
Query 519 CAAGTTGTTCATGTCCGACTTATTGTAGACCAAA-AGGGCAAGCATGCTGGCCATGGCTT 577
||||||||||||| |||||||||||| || | |||| |||||||| ||| || ||
Sbjct 814 GAAGTTGTTCATGTTCGACTTATTGTAAAC-AGCCAGGGAAAGCATGCGGGCTGGGGTTT 872
Query 578 TGTTGAGTTTACTTCTGCTGACGAAGCAAAGAAGGCGCTGGAAAAGAAGAATGGAGAATA 637
|||||||||| |||||||| |||||||| |||||||||||| |||||| || |||||
Sbjct 873 TGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGGCGCTGGTAAAGAAC---GGTGAATA 929
Query 638 TTTACACGATCGCGAGATTTATCTTGATTCGGT--TAAGACAGCTCCATACCGTCCAC-- 693
||| ||| || | |||||| |||||| ||| ||||||||||||| |||||||||
Sbjct 930 TTTGCACAATTACAAGATTTCTCTTGA--CGGAGCTAAGACAGCTCCACACCGTCCACCC 987
Query 694 --G----GCC-----CA-A-G-T-----ACGAAGACTACCTTCGACGAGAAAGCCGTCTG 734
| ||| || | | | ||||||||||||||||| |||| |||| |||
Sbjct 988 AAGTTTTGCCTAGATCACAAGGTTTGGTACGAAGACTACCTTCGAAGAGAGAGCCTTCTC 1047
Query 735 AT-AGATGAAGATGAGGCAGTGGAAGGACTTGATGATGAAACTCCCGAGTTTGTTGAGGA 793
|| | | |||| ||||| |||||||||||||||||| || |||| || ||| |||||||
Sbjct 1048 ATTAAA-GAAGTTGAGGGAGTGGAAGGACTTGATGA--AA-CTCCTGATTTTCTTGAGGA 1103
Query 794 AGTTGCCGTAAGAAAGAAGAC-GCTTTTCATTGCCAATCTCTCTTTCAAAA--C-TAAAA 849
|||||| | |||||| || || | |||| | ||||||||| ||| ||| | | ||
Sbjct 1104 AGTTGCTGCAAGAAAAAATACAGTTTTTG-TCGCCAATCTCCCTTACAACTGTCGTCTAA 1162
Query 850 TA-T-C-AGA-TATCGTCAATTTCTTCAAAGATGTTGGAGAAGTTTTTCGTGTTAGACTT 905
|| | | | | |||| |||||||||||| |||||||||||| || ||| | || || ||
Sbjct 1163 TAGTACCA-ACTATCATCAATTTCTTCAGTGATGTTGGAGAAATTGTTCATATTCGAATT 1221
Query 906 ATTGTAAACCACATGGGTGAGCATGTGGGCTGTGGCTTTGTTGAATTTTCTTCTGCTAAC 965
|||||| ||||||||||||||| |||||||||||||||||| || ||| |||| | |||
Sbjct 1222 ATTGTAGACCACATGGGTGAGCCTGTGGGCTGTGGCTTTGTGGAGTTTAATTCTTCCAAC 1281
Query 966 GAAGCAAAGAAGGCGCTGCAAAAGAAGAATGGT 998
|||||| ||||||||||||||||||||| ||||
Sbjct 1282 GAAGCAGAGAAGGCGCTGCAAAAGAAGACTGGT 1314
Score = 180 bits (97), Expect = 3e-44
Identities = 242/308 (79%), Gaps = 25/308 (8%)
Strand=Plus/Plus
Query 769 ATGAAACTCCCGAG-TTTGTTGAGGAAGTTGCCGTAAGAAAGAAGACGCT-TTTCATTGC 826
||||| |||| | | |||| |||||||| |||| ||| || || ||||| ||| ||||
Sbjct 701 ATGAATCTCCTG-GTTTTGCTGAGGAAGCTGCCATAA-CAA-AA-ACGCTCTTT-GTTGC 755
Query 827 CAATCTCTC-TTTCAAAACTAAAATATCAGATATCGTCAATTTCTTCAAAGATGTTGGAG 885
||||||| | | | | | | |||||||||||| ||||||||||||||||||||||||
Sbjct 756 CAATCTC-CGTGACTCCATTCAGATATCAGATATCATCAATTTCTTCAAAGATGTTGGAG 814
Query 886 AAGTTTTTCGTGTTAGACTTATTGTAAACCA-C-ATGGGTGAGCATGTGGGCTGTGGCTT 943
||||| ||| |||| |||||||||||||| | | | ||| |||||| |||||| || ||
Sbjct 815 AAGTTGTTCATGTTCGACTTATTGTAAAC-AGCCA-GGGAAAGCATGCGGGCTGGGGTTT 872
Query 944 TGTTGAATTTTCTTCTGCTAACGAAGCAAAGAAGGCGCTGCAAAAGAAGAATGGTGAAAA 1003
|||||| ||| ||||||||||||||||| ||||||||||| |||||| |||||| |
Sbjct 873 TGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGGCGCTGGTAAAGAAC---GGTGAATA 929
Query 1004 ATTGCGCT-TT-CGGTATATTTTTCTTGACG-AGGCTGAGATAGCTCCATACCCTCTCCG 1060
|||| | || | | |||| |||||||| || || ||| ||||||| ||| || |
Sbjct 930 TTTGCACAATTACA--AGATTTCTCTTGACGGAG-CTAAGACAGCTCCACACCGTC-C-- 983
Query 1061 ACCCAAGT 1068
||||||||
Sbjct 984 ACCCAAGT 991
Score = 158 bits (85), Expect = 2e-37
Identities = 167/204 (82%), Gaps = 15/204 (7%)
Strand=Plus/Plus
Query 55 TCGATTTCTTCAATGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTG-TAAACCC-CGA 112
|||||||||||| |||||||||||||||||||| ||||||| || | | | || || | |
Sbjct 242 TCGATTTCTTCAGTGATGTTGGAGAAGTTGTTAATGTTCGAATT-T-GCTTAAGCCAC-A 298
Query 113 -GGGTAAGCATGTGG-GCTATGGCTTTGTTGAGTTTGCTTCTCCTTGCTTAG-CAAACAT 169
||| |||| ||| | | | |||||||||||||||| ||||| || | | || ||||||
Sbjct 299 CGGG-AAGC-TGTTGCGTTCTGGCTTTGTTGAGTTTTCTTCTGCTAG-TGAGGCAAACAA 355
Query 170 GGCGCTGGAAAAGAAGAATGGTGAATATTTGCACGATCATA-AGATTTTTCTTGGTGTGG 228
||| ||||||||||||||||||||||||||||||||||| | |||||| |||| || |
Sbjct 356 GGCACTGGAAAAGAAGAATGGTGAATATTTGCACGATCA-AGAGATTTCTCTTAAAGTTG 414
Query 229 CTAAGACA-GCTCCAGACCCTCCA 251
|| ||||| | |||| ||| ||||
Sbjct 415 CTCAGACAAG-TCCATACCGTCCA 437
> AT5G40275.1 | Symbols: | other RNA | chr5:16098190-16100051
REVERSE LENGTH=895
Length=895
Score = 217 bits (117), Expect = 3e-55
Identities = 171/196 (87%), Gaps = 8/196 (4%)
Strand=Plus/Plus
Query 60 TTCTTCAATGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCCCGAGGGTAAG 119
|||||||| |||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 192 TTCTTCAAAGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACC---A----A-G 243
Query 120 CATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTCCTTGCTTAGCAAACATGGCGCTGGAA 179
||||||||||||||||||||||| ||||||||| || | |||||| | ||||||| ||
Sbjct 244 CATGTGGGCTATGGCTTTGTTGACTTTGCTTCTTCTAACGAAGCAAAGAAGGCGCTGCAA 303
Query 180 AAGAAGAATGGTGAATATTTGCACGATCATAAGATTTTTCTTGGTGTGGCTAAGACAGCT 239
||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||
Sbjct 304 AAGAAGAATGGTGAATATTTGCATGATCATCAGATTTTTCTTCAAGTGGCTAAGACAGCT 363
Query 240 CCAGACCCTCCACGAC 255
||| ||||| ||||||
Sbjct 364 CCATACCCTACACGAC 379
Score = 202 bits (109), Expect = 7e-51
Identities = 209/254 (82%), Gaps = 20/254 (8%)
Strand=Plus/Plus
Query 823 TTGCCAATCTCTCTTTCAAAACTAAAATATCAGATATCGTC--A-ATTTCTTCAAAGATG 879
|||||||||||||| | |||||||||||| | || ||| | | |||||||||||||
Sbjct 148 TTGCCAATCTCTCTCCCCAAACTAAAATAT-TG-CAT-GTCAAAGAATTCTTCAAAGATG 204
Query 880 TTGGAGAAGTTTTTCGTGTTAGACTTATTGTAAACCACATGGGTGAGCATGTGGGCTGTG 939
||||||||||| || ||||| ||||||||||||| | || |||||||||||| ||
Sbjct 205 TTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAA-C-CA------AGCATGTGGGCTATG 256
Query 940 GCTTTGTTGAATTTTCTTCTGCTAACGAAGCAAAGAAGGCGCTGCAAAAGAAGAATGGTG 999
|||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 257 GCTTTGTTGACTTTGCTTCTTCTAACGAAGCAAAGAAGGCGCTGCAAAAGAAGAATGGTG 316
Query 1000 AAAAATTGCGCTT-TCGGT-ATATTTTTCTTGACGAGGCTGAGATAGCTCCATACCCT-C 1056
|| | |||| | || | | ||||||||| | | |||| ||| ||||||||||||| |
Sbjct 317 AATATTTGCA-TGATCA-TCAGATTTTTCTTCAAGTGGCTAAGACAGCTCCATACCCTAC 374
Query 1057 TCCGACCCAAGTAC 1070
| |||||||||||
Sbjct 375 AC-GACCCAAGTAC 387
> AT3G10845.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:3394009-3397526 FORWARD LENGTH=1272
Length=1272
Score = 154 bits (83), Expect = 2e-36
Identities = 138/164 (84%), Gaps = 6/164 (4%)
Strand=Plus/Plus
Query 54 TTCGATTTCT-TCAATGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCCCGA 112
|||| ||||| |||| |||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 430 TTCGGTTTCTGTCAA-GATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGCAAACCATGA 488
Query 113 GGGTAAGCATGTGGGCTATGGCTTTGTTGAGTTTGCTT-CT-CCTTGCTTAGCAAACATG 170
|| |||| |||||||| || ||||||||||||| ||| || || | |||||| | |
Sbjct 489 GGACAAGCCTGTGGGCTGTGCCTTTGTTGAGTTT-CTTTCTGCCAA-CGAAGCAAAGAAG 546
Query 171 GCGCTGGAAAAGAAGAATGGTGAATATTTGCACGATCATAAGAT 214
| ||||||||| ||||||||||||||||| || | |||||||||
Sbjct 547 GTGCTGGAAAACAAGAATGGTGAATATTTTCATGGTCATAAGAT 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60391255635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5