BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937636
Length=377
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase fa... 243 1e-63
AT5G40275.1 | Symbols: | other RNA | chr5:16098190-16100051 RE... 174 5e-43
AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 128 4e-29
> AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase
family protein / RNA recognition motif (RRM)-containing protein
| chr3:18103152-18110216 FORWARD LENGTH=2766
Length=2766
Score = 243 bits (131), Expect = 1e-63
Identities = 165/182 (91%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 125 TTCCCTCAAGACAAAACACGCTCTATGTTACCTGTCTCTCTCCCCATACTAAAATATCAG 184
||||||||||| |||| |||||||||||| ||||||| ||| | | |||||||| |||
Sbjct 1796 TTCCCTCAAGAAAAAAGACGCTCTATGTTTGCTGTCTCCCTCGCGACACTAAAATGCCAG 1855
Query 185 ATATCATCGATTTCTTCAAAGATGTTGGACAAGTTGTTAGTGTTCAACTTACTATAAAAC 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1856 ATATCATCGATTTCTTCAAAGATGTTGGACAAGTTGTTAGTGTTCAACTTACTACAAAAC 1915
Query 245 GCGAGGGTAAGCGTTTGTCCAGTGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAAAGA 304
|| | ||| ||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 1916 GCAACGGTTTGCGTTTGTCCACTGGCTTCGTTGAGTTTGCTTCTGCTAACGAAGCAAAGA 1975
Query 305 AG 306
||
Sbjct 1976 AG 1977
> AT5G40275.1 | Symbols: | other RNA | chr5:16098190-16100051
REVERSE LENGTH=895
Length=895
Score = 174 bits (94), Expect = 5e-43
Identities = 201/251 (80%), Gaps = 14/251 (6%)
Strand=Plus/Plus
Query 119 AGGCAGTTCCCT-CAAGACAAAACACGCTCTATGTTACCTGTCTCTCTCCCCATA-CTAA 176
|||||||| || |||| |||| ||||||| |||| || |||||||||| | | || |
Sbjct 497 AGGCAGTT-GCTGTAAGAAAAAAGACGCTCTTTGTTTCCCGTCTCTCTCCGGA-AGCTCA 554
Query 177 AATATCAGATATCATCGATTTCTTCAAAGATGTTGGACAAGTTGTTA-GTGTTCAACTTA 235
|||||||||||||||| ||||||||||||| ||||||||||||| || ||||| |||||
Sbjct 555 AATATCAGATATCATCAATTTCTTCAAAGACGTTGGACAAGTTG-TACATGTTCGACTTA 613
Query 236 CTATAAAAC-GCGA-GGGTAAGCGT-TTGTCCAGTGGCTTTGTTGAGTTTGCTTCTGCTA 292
| | | || | | ||| ||| | | | | | ||||||||||||||||||||||||||
Sbjct 614 TTGT-AGACTAC-ACGGGCGAGCATGTGGGCGA-TGGCTTTGTTGAGTTTGCTTCTGCTA 670
Query 293 ACGAAGCAAAGAAGTTGAGACTAGTTTATAGTTTAATCATGAAATGTATTTTACTAGTCA 352
|||||||| ||||| | ||| ||||||||||| ||| ||| || ||||| | |||| |
Sbjct 671 ACGAAGCAGAGAAGGTAAGAGTAGTTTATAGT--AATGATGGAAGGTATTAAAGTAGTAA 728
Query 353 TTTGAAAAGTA 363
||| |||||||
Sbjct 729 TTTAAAAAGTA 739
> AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:17050631-17052189 FORWARD LENGTH=1494
Length=1494
Score = 128 bits (69), Expect = 4e-29
Identities = 142/176 (81%), Gaps = 9/176 (5%)
Strand=Plus/Plus
Query 135 ACAAAACACGCTCTATGTTACCTGTCT-C-TCTCCCCATACTAAAATATCAGATATCATC 192
|||||| ||||||| |||| || ||| | | | |||| | | |||||||||||||||
Sbjct 736 ACAAAA-ACGCTCTTTGTTGCCAATCTCCGTGACTCCAT--TCAGATATCAGATATCATC 792
Query 193 GATTTCTTCAAAGATGTTGGACAAGTTGTT-AGTGTTCAACTTACTATAAAAC-GCGAGG 250
|||||||||||||||||||| |||||||| | ||||| ||||| | | |||| || |||
Sbjct 793 AATTTCTTCAAAGATGTTGGAGAAGTTGTTCA-TGTTCGACTTATTGT-AAACAGCCAGG 850
Query 251 GTAAGCGTTTGTCCAGTGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAAAGAAG 306
| |||| | | | | || |||||||||||||||||||||||||||||| |||||
Sbjct 851 GAAAGCATGCGGGCTGGGGTTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAG 906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17744515397
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5