BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937638
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48730.1 | Symbols: GSA2 | glutamate-1-semialdehyde 2,1-amin... 2357 0.0
AT5G63570.1 | Symbols: GSA1 | glutamate-1-semialdehyde-2,1-amin... 1293 0.0
> AT3G48730.1 | Symbols: GSA2 | glutamate-1-semialdehyde 2,1-aminomutase
2 | chr3:18049614-18051702 FORWARD LENGTH=1654
Length=1654
Score = 2357 bits (1276), Expect = 0.0
Identities = 1409/1472 (96%), Gaps = 14/1472 (1%)
Strand=Plus/Plus
Query 1 AACGTAGAGATATAGCAACAATGGCGGCGACGCTTACAGGATCAGGGATTGCTCTAGGGT 60
|||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct 65 AACGTAGAGATATAGCAA-AATGGCTGCGACGCTTACTGGATCAGGGATTGCTCTAGGGT 123
Query 61 TTTCGTGTTCCGCTAAGTTCTCTAAGAGAGCCTCTTCTTCTTCTTCGTCGTCGTCCAACC 120
||||||| ||||| |||||||||||||||| |||| | |||||||||||||
Sbjct 124 TTTCGTGCTCCGCAAAGTTCTCTAAGAGAG---------CTTC-T--TCGTCGTCCAACC 171
Query 121 GTCGCTGCATCAAGATGTCAGTTTCAGTAGAAGAGAAAACGAAGAAGTTCACTCTTCAGA 180
||||||||||||||||||| ||||| ||||| ||||| |||||||| |||||||||||||
Sbjct 172 GTCGCTGCATCAAGATGTCGGTTTCGGTAGAGGAGAAGACGAAGAAATTCACTCTTCAGA 231
Query 181 AATCTGAGGAAGCTTTCAATGCTGCCAAGAACTTAATGCCTGGAGGTGTGAACTCACCTG 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 232 AATCTGAGGAAGCTTTCAATGCTGCGAAGAACTTAATGCCTGGAGGTGTGAACTCACCTG 291
Query 241 TACGTGCTTTCAAATCTGTTGGTGGACAACCAGTTGTGATGGATTCTGCAAAGGGTTCAC 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 292 TACGTGCTTTCAAATCTGTTGGTGGACAACCAGTGGTGATGGATTCTGCAAAGGGCTCAC 351
Query 301 GAATAAGAGACATTGATGGAAATGAATACATTGATTATGTTGGTTCTTGGGGACCAGCTA 360
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 352 GAATAAGAGACATTGATGGAAATGAATACATTGACTATGTTGGATCTTGGGGACCTGCTA 411
Query 361 TAATTGGTCATGCTGATGATGAGGTTCTTGCAGCTTTGGCTGAGACAATGAAGAAAGGAA 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 412 TAATTGGTCATGCTGATGATGAGGTTCTTGCTGCTTTGGCTGAGACAATGAAGAAAGGAA 471
Query 421 CAAGCTTTGGTGCTCCTTGTCTCTTAGAGAATGTTCTTGCTGAGATGGTGATTTCAGCTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 CAAGCTTTGGTGCTCCTTGTCTCTTAGAGAATGTTCTTGCTGAGATGGTGATTTCAGCTG 531
Query 481 TTCCAAGTATTGAAATGGTTCGGTTTGTTAACTCGGGTACGGAGGCATGTATGGGCGTGC 540
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 532 TTCCAAGTATTGAAATGGTTCGGTTTGTTAACTCCGGTACAGAGGCATGTATGGGTGTGC 591
Query 541 TACGTCTTGCTCGTGCCTTCACAGGGAAACAAAAGTTCATCAAGTTCGAAGGTTGTTATC 600
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 592 TACGTCTTGCTCGTGCCTTCACAGGGAAACAAAAGTTCATCAAGTTTGAAGGTTGTTATC 651
Query 601 ATGGTCATGCAAACTCTTTCCTTGTCAAAGCAGGTAGTGGTGTCGCTACTTTGGGTCTAC 660
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 652 ATGGTCATGCAAACTCTTTCCTTGTCAAAGCAGGTAGTGGTGTAGCTACTTTGGGTCTAC 711
Query 661 CTGACTCGCCTGGTGTCCCTAAATCAGCTACTTCAGATACTCTAACAGCTCCTTACAATG 720
||||||||||||| ||||| ||| ||||||||||||||||| |||||||||| |||||||
Sbjct 712 CTGACTCGCCTGGGGTCCCCAAAGCAGCTACTTCAGATACTTTAACAGCTCCATACAATG 771
Query 721 ATATTGCTGCTGTTGAGCAGCTTTTTGAGGCAAACAAAGGCGAGATAGCTGCGATCATTC 780
||||||||||||||||| |||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 772 ATATTGCTGCTGTTGAGAAGCTTTTTGAGGCAAACAAAGGAGAGATTGCTGCCATCATTC 831
Query 781 TTGAACCTGTTGTTGGTAACTCGGGTTTTATTACACCTAAACCAGAGTTCATTGAGGGAA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TTGAACCTGTTGTTGGTAACTCGGGTTTTATTACACCTAAACCAGAGTTCATTGAGGGAA 891
Query 841 TACGCCGGATTACTAAAGACAATGGTGCTCTTCTTATTTTCGATGAAGTCATGACGGGTT 900
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 892 TACGCCGGATCACTAAAGACAATGGTGCTCTTCTTATTTTCGATGAAGTCATGACTGGTT 951
Query 901 TCCGTTTAGCCTATGGTGGAGCTCAAGAATACTTTGGAATCACACCTGACTTAACAACTC 960
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 TTCGTTTAGCCTATGGTGGAGCTCAAGAATACTTTGGAATCACACCTGACTTAACAACTC 1011
Query 961 TTGGGAAAATCATCGGTGGTGGTCTTCCTGTGGGAGCATACGGTGGAAGAAGAGACATCA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 TTGGGAAAATCATCGGTGGTGGTCTTCCTGTGGGAGCATACGGTGGAAGAAGAGACATCA 1071
Query 1021 TGGAAATGGTTGCACCCGCAGGACCGATGTATCAAGCTGGTACGCTAAGTGGTAATCCGC 1080
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 TGGAAATGGTTGCACCCGCAGGACCGATGTATCAAGCTGGTACGCTAAGTGGTAATCCGT 1131
Query 1081 TGGCTATGACAGCGGGTATTCACACACTGAAGCGGTTAAGTCAGCCTGGGACATATGAAT 1140
||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 1132 TGGCTATGACAGCGGGTATACACACGCTGAAGCGGTTAAGTCAGCCAGGGACATATGAAT 1191
Query 1141 ACTTAGACAAGATCACAAAGGAGCTTACAAATGGGATACTAGAAGCCGGGAAGAAAACGG 1200
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1192 ACTTAGACAAGATCACAAAAGAGCTTACAAATGGGATACTAGAAGCCGGGAAGAAAACCG 1251
Query 1201 GGCATGCGATGTGTGGTGGATACATAAGTGGGATGTTCGGTTTCTTCTTCACTGAAGGAC 1260
|||||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||
Sbjct 1252 GGCATGCGATGTGTGGCGGTTACATAAGCGGGATGTTCGGTTTCTTCTTCACGGAAGGAC 1311
Query 1261 CCGTCTACGATTTCTCGGATGCCAAGAAGAGCGATACAGAGAAGTTTGGAAAGTTTTTCA 1320
||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1312 CCGTCTATGATTTCTCGGATGCAAAGAAGAGTGATACAGAGAAGTTTGGAAAGTTTTTCA 1371
Query 1321 GAGGAATGTTGGAAGAAGGTGTCTACTTGGCACCTTCTCAATTCGAGGCCGGTTTTACCA 1380
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1372 GAGGAATGTTGGAAGAAGGTGTCTACTTGGCACCTTCTCAATTCGAGGCCGGTTTTACTA 1431
Query 1381 GCTTGGCTCATACTTCAGAAGACATCCAATTCACTATCGCAGCGGCCGAGAAGGTTCTAA 1440
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 GCTTGGCTCACACTTCAGAAGACATCCAATTCACTATCGCAGCGGCCGAGAAGGTTCTAA 1491
Query 1441 GTCGGATCTAAAATGT-TCTGGAAGCTTCCAG 1471
||||| |||||||||| |||||||||||||||
Sbjct 1492 GTCGGCTCTAAAATGTCTCTGGAAGCTTCCAG 1523
> AT5G63570.1 | Symbols: GSA1 | glutamate-1-semialdehyde-2,1-aminomutase
| chr5:25451875-25453841 FORWARD LENGTH=1728
Length=1728
Score = 1293 bits (700), Expect = 0.0
Identities = 1210/1455 (83%), Gaps = 40/1455 (3%)
Strand=Plus/Plus
Query 21 ATGGCGGCGACGCTTACAGGATCAGGG-ATTGCTCTAGGGTTTTCGTGTTCCGCTAAGTT 79
||| ||||||||||||||||||| ||| | |||| | ||||||||||||||| | ||| |
Sbjct 83 ATGTCGGCGACGCTTACAGGATC-GGGAACTGCTTTGGGGTTTTCGTGTTCCTCGAAGAT 141
Query 80 CTCTAAGAGAGCCTCTTCTTCTTCTTCGTC-GTCGTCCAACCG-TCGCTGCATCAAGATG 137
||| || |||| | ||||||||| | | | | || ||||| | ||||||||||||||
Sbjct 142 CTCGAAAAGAG--T-TTCTTCTTC-AC--CAG-CTTCTAACCGAT-GCTGCATCAAGATG 193
Query 138 TCAGTTTCAGTAGAAGAGAA-AACGAAGAAG-TTCACTCTTCAGAAATCTGAGGAAGCTT 195
|| ||||| || || ||||| || ||| ||| |||| |||||||||||||||||||||||
Sbjct 194 TCTGTTTCCGTCGACGAGAAGAA-GAA-AAGTTTCAGTCTTCAGAAATCTGAGGAAGCTT 251
Query 196 TCAATGCTGCCAAGAACT-TAATGCCTGGAGGTGTGAACTCACCTGTACGTGCTTTCAAA 254
|||||||||| ||||| | ||||||||||||||||||| || ||||| || || ||||||
Sbjct 252 TCAATGCTGCTAAGAA-TCTAATGCCTGGAGGTGTGAATTCCCCTGTTCGAGCATTCAAA 310
Query 255 TCTGTTGGTGGACAACCAGTTGTGATGGATTCTG-CAAAGGGTTCACGAATAAGAGACAT 313
|| |||||||||||||| ||| |||| ||||||| ||| || ||| ||| | |||||
Sbjct 311 TCCGTTGGTGGACAACCTGTTTTGATTGATTCTGTTAAA-GGCTCAAAAATGTGGGACAT 369
Query 314 TGATGGAAATGAATACATTGATTATGTTGGTTCTTGGGGACCAGCTATAATTGGTCATGC 373
|||||||||||| || ||||| || ||||| ||||||||||| ||||| ||||| |||||
Sbjct 370 TGATGGAAATGAGTATATTGACTACGTTGGCTCTTGGGGACCTGCTATTATTGGCCATGC 429
Query 374 TGATGATGAGGTTCTTGCAGCTTTGGCTGAGACAATGAAGAAAGGAACAAGCTTTGGTGC 433
|||||| ||||||||||| ||| | |||||||| ||||||||||||||||||||||||||
Sbjct 430 TGATGACGAGGTTCTTGCGGCTCTAGCTGAGACGATGAAGAAAGGAACAAGCTTTGGTGC 489
Query 434 TCCTTGTCTCTTAGAGAATGTTCTT-GCTGAGATGGTGATTTCAGCTGTTCCAAGTATTG 492
|||||||||||| ||||||||| || ||||||||||| || ||||||||||| || ||||
Sbjct 490 TCCTTGTCTCTTGGAGAATGTT-TTAGCTGAGATGGTTATATCAGCTGTTCCCAGCATTG 548
Query 493 AAATGGTTCGGTTTGTTAACTCGGGTACGGAGGCATGTATGGGCGTGCTACGTCTTGCTC 552
||||||||||||||||||| || ||||| || || |||||||| ||||| |||||||| |
Sbjct 549 AAATGGTTCGGTTTGTTAATTCTGGTACTGAAGCGTGTATGGGTGTGCTTCGTCTTGC-C 607
Query 553 -GTGCCTTCAC-AGGGAAACAAAAGTTCATCAAGTTCGAAGGTTGTTATCATGGTCATGC 610
| || ||||| | ||| | |||||||| ||||| ||||| |||||||| ||||||||
Sbjct 608 AGAGCTTTCACTAAC-AAAGAGAAGTTCATTAAGTTTGAAGGGTGTTATCACGGTCATGC 666
Query 611 AAACTCTTTCCTTGTCAAAGCAGGTAGTGGTGTCGCTACTTTGGGTCTACCTGACTCGCC 670
||| | |||||||| ||||| ||||||||||| || |||||||| ||||| ||||| ||
Sbjct 667 TAACGCCTTCCTTGTTAAAGCTGGTAGTGGTGTTGCCACTTTGGGGCTACCGGACTCTCC 726
Query 671 TGGTGTCCCTAAATCAGCTACTTCAGATACTCTAACAGCTCCTTACAATGATATTGCTGC 730
|||||||||||| ||||||||||||||||| |||||||||| ||||||||| ||| ||
Sbjct 727 AGGTGTCCCTAAAGCAGCTACTTCAGATACTTTAACAGCTCCGTACAATGATCTTGAAGC 786
Query 731 TGTTGAGCAGCTTTTTGAGGCAAACAAAGGCGAGATAGCTGCGATCATTCTTGAACCTGT 790
||||||| |||| |||| || | ||||| ||||| ||||| | ||||| ||||||||
Sbjct 787 TGTTGAGAAGCTCTTTGCTGCGCATAAAGGGGAGATTTCTGCGGTAATTCTCGAACCTGT 846
Query 791 TGTTGGTAACTCGGGTTTTATTACACCTAAACCAGAGTTCATTGAGGGAATACGCCGGAT 850
|||||||||||| || || || | |||| || || ||||| | || |||||| | |
Sbjct 847 TGTTGGTAACTCCGGATTCATCCCTCCTACTCCGGAATTCATCAACGGTTTACGCCAGCT 906
Query 851 TACTAAAGACAATGGTGCTCTTCTTATTTTCGATGAAGTCATGACGGG-TTTCCGTTTAG 909
||||||||||||||||| |||||| || ||||||||||||||||| || |||| || |||
Sbjct 907 TACTAAAGACAATGGTGTTCTTCTCATCTTCGATGAAGTCATGACTGGATTTC-GTCTAG 965
Query 910 CCTATGGTGGAGCTCAAGAATACTTTGGAATCACACCTGA-CTTAACAACTCTTGGGAAA 968
||||||||||||| |||||||||||||||||||| ||||| || ||| |||||||| |||
Sbjct 966 CCTATGGTGGAGCCCAAGAATACTTTGGAATCACGCCTGATCT-AACTACTCTTGGTAAA 1024
Query 969 ATCATCGGTGGTGGTCTTCCTGTGGGAGCATACGGTGGAAGAAGAGACATCATGGAAATG 1028
|| || ||||| |||||||| ||||||||||||||||| ||| | || || ||||| |||
Sbjct 1025 ATTATTGGTGGGGGTCTTCCCGTGGGAGCATACGGTGGTAGACGTGATATTATGGAGATG 1084
Query 1029 GTTGCACCCGCAGGACCGATGTATCAAGCTGGTACGCTAAGTGGTAATCCGCTGGCTATG 1088
||||| ||||| ||||| ||||| ||||| || || |||||||||||||||||||| |||
Sbjct 1085 GTTGCTCCCGCTGGACCAATGTACCAAGCCGGGACTCTAAGTGGTAATCCGCTGGCAATG 1144
Query 1089 ACAGC-GGGTATTCACACACTGAAGCGGTTAA-GTCAGCCTGGGACATATGAATACTTAG 1146
|| || ||| |||||||| ||||||||| ||| | ||| | || |||||||| || ||||
Sbjct 1145 ACTGCAGGG-ATTCACACGCTGAAGCGGCTAAAG-CAGGCAGGAACATATGAGTATTTAG 1202
Query 1147 ACAAGATCACAAAGGAGCTTACAAATGGGATACT-AGAAGCCGGGAAGAAAACGGGGCAT 1205
|||||||||| ||||| || || || || || || ||||||||| |||||||| ||||||
Sbjct 1203 ACAAGATCACGAAGGAACTAACCAACGGAAT-CTTAGAAGCCGGAAAGAAAACCGGGCAT 1261
Query 1206 GCGATGTGTGGTGGATACATAAGTGGGATGTTCGGTTTCTTCTTCACTGAAGGACCCGTC 1265
| ||||| || || |||||||| || ||||| || ||||| ||| | |||||||| ||
Sbjct 1262 CCAATGTGCGGGGGTTACATAAGCGGTATGTTTGGATTCTTTTTCGCAGAAGGACCGGTT 1321
Query 1266 TACGA-TTTCTCGGA-TGCCAAGAAGAGCGATACAGAGAAGTTTGGAAAGTTTTTCAGAG 1323
||| | ||| | || | | ||||||||||| |||||||||||||| | ||||||||| |
Sbjct 1322 TACAACTTTG-CAGACT-CAAAGAAGAGCGACACAGAGAAGTTTGGTAGGTTTTTCAGGG 1379
Query 1324 GAATGTTGGAAGAAGGTGTCTACTTGGCACCTTCTCAATTCGAGGCCGGTTTTACCAGCT 1383
||||||||||||||||||| ||||| ||||| ||||| || |||||||| ||||| ||||
Sbjct 1380 GAATGTTGGAAGAAGGTGTTTACTTTGCACCGTCTCAGTTTGAGGCCGGGTTTACGAGCT 1439
Query 1384 TGGCTCATACTTCAGAAGACATCCAATTCACTATCGCAGCGGCCGAGAAGGTTCTAAGTC 1443
||||||| ||| | || || || || || || || || ||||| |||| ||| || |||
Sbjct 1440 TGGCTCACACTCCCGAGGATATACAGTTAACAATTGCTGCGGCTGAGAGGGTACTGAGTA 1499
Query 1444 GGATCTAAAATGTTC 1458
||||||| |||||||
Sbjct 1500 GGATCTAGAATGTTC 1514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72640188615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5