BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937642
Length=1480
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48760.1 | Symbols: | DHHC-type zinc finger family protein ... 2492 0.0
> AT3G48760.1 | Symbols: | DHHC-type zinc finger family protein
| chr3:18075794-18078291 FORWARD LENGTH=1746
Length=1746
Score = 2492 bits (1349), Expect = 0.0
Identities = 1434/1476 (97%), Gaps = 1/1476 (0%)
Strand=Plus/Plus
Query 6 TTTTTCT-GGTTTCTTCCGATGTTAGATTTGCAGCCGTCAGATCGGCGTCATGGAGCTCC 64
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 90 TTTTTCTGGGTTTCTTCCGATGTTAGATTTGCAGCCGTCAGATCGGCGTCATGGAGCTCC 149
Query 65 GAGTAGTAGCGGCGGTGGTAGTGGTGGTGATGAGCTGATCAGAACTTATAAAGGCTGGAA 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 150 GAGTAGTAGCGGCGGTGTTAGTGGTGGTGATGAGCTGATCAGAACTTATAAAGGCTGGAA 209
Query 125 AGGAAATAACGTGTTCTTCCTTGGAGGAAGGCTCGTGTTTGGACCCGATGCTCGATCTAT 184
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 210 AGGCAATAACGTGTTCTTCCTTGGAGGAAGGCTCGTGTTTGGACCTGATGCTCGATCTAT 269
Query 185 TCTGATCACCATCTTCTTGATTACAGCTCCTGTCATTGTATTCTGTATTTTTGTTGGCAG 244
||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 270 TCTCATCACCGTCTTCTTAATTACAGCTCCTGTCATTGTATTCTGTATTTTTGTTGGCAG 329
Query 245 AAAATTCATCGATGATTTCCCTCACCATAGAGGAGTATCAATTTTAGCTGTCGCTGTTGG 304
|||||| ||||||||||| ||||||||||||||||||||| |||||||||| ||||||||
Sbjct 330 AAAATTTATCGATGATTTTCCTCACCATAGAGGAGTATCAGTTTTAGCTGTTGCTGTTGG 389
Query 305 TCTGATTTTATTAGATCTAATATTTCTTCTTCTAACCTCCGCGAGAGACCCAGGAATAAT 364
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 390 TCTGATTTTATTAGATCTAGTATTTCTTCTTCTAACCTCCGCGAGAGACCCAGGGATAAT 449
Query 365 ACCACGTAATCTATATCCTCCTGAACCAGAGGGTAATGAAGGCAATGGAGAACCGCGTCT 424
|||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 450 ACCACGTAATCTGTATCCTCCTGAACCAGAGAGTAATGAAGGCAATGGAGAACCACGTCT 509
Query 425 TGCTCATACTCCTCAGAGTCGGTTGCCTCGGACAAAGGATATGATTGTAAATGGAATTAC 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 TGCTCATACTCCTCAGAGTCGGTTGCCTCGGACAAAGGATATGATTGTAAATGGAATTAC 569
Query 485 TGTGAAGATCAAATACTGTGACACATGCATGCTTTACAGACCACCCCGTGCTTCTCATTG 544
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 570 TGTCAAGATCAAATACTGTGACACATGCATGCTTTACAGACCGCCCCGTGCTTCTCATTG 629
Query 545 TTCGATTTGCAACAACTGCGTTGAGAAGTTTGATCACCACTGTCCTTGGCTTGGTCAGTG 604
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 630 TTCGATTTGCAACAACTGCGTCGAGAAGTTTGATCACCACTGTCCTTGGCTTGGTCAGTG 689
Query 605 CATTGGATTGAGAAACTATAGGTTCTACTTCATGTTTGTGTTGTGCTCAACTCTTCTCTG 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 CATTGGATTGAGAAACTATAGGTTCTACTTCATGTTTGTGTTGTGCTCAACTCTTCTCTG 749
Query 665 CATTTATGTCCATGTGTTCTGCTGGATCTACGTCAAGCGTATAATGGATAGTGAAAACAT 724
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 750 CATTTATGTCCATGTGTTCTGCTGGATCTACGTCAAGCGGATAATGGATAGTGAGAACAT 809
Query 725 AAACATCTGGAAATCGTTTATCAAGACTCCTGCTTCCATCGCACTAATAATCTACACTTT 784
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 810 AAACATCTGGAAATCGTTTCTCAAGACTCCTGCTTCCATTGCACTAATAATCTACACTTT 869
Query 785 CATTTGCGTCTGGTTTGACGGTGGGCTTACCTGTTTCCACTTGTACCTAATGAGTACCAA 844
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 870 CATTTGCGTCTGGTTTGTTGGTGGGCTTACCTGTTTCCACTTGTACCTAATGAGTACCAA 929
Query 845 TCAGTCAACTTACGAAAACTTTAGGTATCGGTATGATAGACATGAGAACCCCTTCAACAA 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 TCAGTCAACTTACGAAAACTTTAGGTATCGGTATGATAGACATGAGAACCCCTTCAACAA 989
Query 905 AGGAATAGTGGGGAACTTTATGGAAGTATTCTGCACAAACGTTGCCATATCTCAGAACAG 964
||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||
Sbjct 990 AGGAATAGTGGGGAACTTTATGGAAGTTTTCTGCACAAATGTTGCCGTATCTCAGAACAG 1049
Query 965 TTTCAGAGCAAAGGTTTCAAAGGAGCCTGCAATACCACCAAGGACAGTAAACGGAGGGAT 1024
|||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1050 TTTCAGAGAAAAGGTTTCAAAGGAGCCAGCAATACCACCAAGGACAGTAAATGGAGGGAT 1109
Query 1025 GTCAAGCCCGAGCTTACAGAAAGTTTCCCACGACATAGAGATGGGAAGAAAACCAGTGTG 1084
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1110 GTCAAGCCCGAGCTTACAGAAAGTTTCCAACGACATAGAGATGGGGAGAAAACCAGTGTG 1169
Query 1085 GCACGAGACAGTAGAAGAAGAGCTCGGTGACATGGAAAAGGACATGGAAGCAGGGGTTGC 1144
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1170 GCACGAGACAGTAGAAGAAGAGCTCGGTGACATCGAAAAGGACATGGAAGCAGGGGTTGC 1229
Query 1145 ATCACGGGATTTGAGCAGAATGCTTCCTCCAGAAGAATCTGAAGGACGCGGGATAATGCA 1204
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1230 ATCACGGGATTTGAGCAGAATGCTTCCTCCAGAAGAATCTGAAGGACGAGGGATTATGCA 1289
Query 1205 TTCAAGAGAGTCAAGCAGGGGACGTGGGATTATGCATTCGAGAGAGTCAAGCAGGGGAAG 1264
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1290 TTCAAGAGAGTCAAGCAGGGGACGCGGGATTATGCATTCAAGAGAGTCAAGCAGGGGAAG 1349
Query 1265 AAGAGGAGGGAGCTGGGAATTGTCAAGCCGTGTTAACGAAGATTTAAGAACCAGAGATGA 1324
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1350 AAGAGGAGGGAGCTGGGAATTGTCAAGCCGTGTAAACGAAGATTTAAGAACCAGAGATGA 1409
Query 1325 ATCTGTGTCAAGAGTCGGTGAAGACAGCTCAGAGTCTTCAGACAATGATGCTTCCAGAGA 1384
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1410 GTCTGTGTCAAGAGTCGGTGAAGACAGCTCAGAGTCTTCAGACAATGATGCTTCAAGAGA 1469
Query 1385 TTTACATGTTGAGATATATGATGCAGTAACAAGTAGAGGAAGAACCGGAACTGGTATAGG 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 TTTACATGTTGAGATATATGATGCAGTAACAAGTAGAGGAAGAACCGGAACTGGTATAGG 1529
Query 1445 GCGGTTATAGTCTCCGGTTTTAAGCCAATTACACTA 1480
|||||||||||||||||||| |||||||||||||||
Sbjct 1530 GCGGTTATAGTCTCCGGTTTAAAGCCAATTACACTA 1565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72991592430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5