BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937649
Length=1364
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48820.1 | Symbols: | Glycosyltransferase family 29 (sialyl... 2191 0.0
> AT3G48820.1 | Symbols: | Glycosyltransferase family 29 (sialyltransferase)
family protein | chr3:18099729-18102911 REVERSE
LENGTH=1759
Length=1759
Score = 2191 bits (1186), Expect = 0.0
Identities = 1299/1355 (96%), Gaps = 1/1355 (0%)
Strand=Plus/Plus
Query 4 TTCTTACTGGGGAATCGATGAAGCTCTTGCATTTGATATTCTTATTAGCTCTAACAACTG 63
||| |||||||||||||||||||||||||||| ||||||||||||||||| | || ||||
Sbjct 44 TTC-TACTGGGGAATCGATGAAGCTCTTGCATCTGATATTCTTATTAGCTTTGACTACTG 102
Query 64 GAATCTCTGCTGTTCTAATCTACATTATCGGCGTCTCTAATCTATACGAGTCTAATCGGC 123
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 103 GAATCTCTGCTGTTCTAATCTACATTATCGGCGTCTCTAATCTCTACGAGTCTAATCGTT 162
Query 124 TTAGCAATGAAGATTTAGAGGCGTTGCATTCCTTGCAGAGCGGATTCCAGAAGTGCGTAA 183
||| |||||||||||||||||||||||| || ||||||| ||||||||||||||||||||
Sbjct 163 TTACCAATGAAGATTTAGAGGCGTTGCAGTCTTTGCAGAACGGATTCCAGAAGTGCGTAA 222
Query 184 GTGCAAATGGTTTAGGACTACAAGGTGCTATGGGTAGTGATTATTGCAAAGTTTCAATAA 243
||||||||||||| |||||||||| |||||||||||| ||||||||||||||||| ||||
Sbjct 223 GTGCAAATGGTTTGGGACTACAAGCTGCTATGGGTAGAGATTATTGCAAAGTTTCTATAA 282
Query 244 ACTTCCCCAAGGATACTCTCCCCAAATGGAAAGATCCCAAGTCTGGAGAGCTTGAAGGAC 303
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 283 ACTTCCCTAAGGATACTGTCCCCAAATGGAAAGATCCCAAGTCTGGAGAGCTTGAAGGAT 342
Query 304 TGTCATATGAGTTTGACCTGTGTGAAGCAGTAGCTACATGGGAACAAGTTAGGAATAGCT 363
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 343 TGTCATATGAGTTTGACCTGTGTGAAGCAGTAGCTACATGGGAACAAGTCAGGAATAGCT 402
Query 364 CTACCATACTCACCAAGGAATACATTGATGCCTTACCAAATGGATGGGAGGATTATGCTT 423
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 403 CTACAATACTCACCAAGGAATACATTGATGCCTTACCAAATGGATGGGAGGATTATGCAT 462
Query 424 GGCGCAGAATCAATAAAGGAATTCAACTTAATCGTTGCCAGAATAAATCTTTATGCATCG 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 463 GGCGCAGAATCAATAAAGGAATTCAACTTAATCGTTGCCAGAATAAATCTTTATGCATTG 522
Query 484 AGAAGCTTTCATTGGTGCTTCCTGAAACACCACCATATTTTCCCCGGCAGTTTGGGCGAT 543
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 523 AGAAGCTTTCATTGGTGCTTCCTGAAACACCACCATATTTCCCCCGGCAGTTTGGGCGAT 582
Query 544 GTGCTGTTATTGGTAACTCTGGTGATCTCTTAAAAACAAAGTTCGGAAAGGAGATAGATA 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 GTGCTGTTATTGGTAACTCTGGTGATCTCTTAAAAACAAAGTTCGGAAAGGAGATAGATA 642
Query 604 CCTACGATGCAGTTCTAAGAGAAAATGGTGCTCCGATTCAGAACTACAAGGAATATGTGG 663
| || ||| | ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 643 CTTATGATACGGTTCTAAGAGAAAATGGTGCTCCTATTCAGAACTACAAGGAATATGTGG 702
Query 664 GAGAAAAAAGTACATTCCGACTTCTTAATCGAGGGTCAGCAAAAGCCCTTGACAAAGTCG 723
|||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 703 GAGAGAAAAGTACATTCCGTCTTCTTAATAGAGGGTCAGCAAAAGCCCTTGACAAAGTCG 762
Query 724 TGGAGTTAGATGaaaaaaaGCAAGAGGTCCTGCTAGTCAAAACAACAATTCATGATATTA 783
||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 763 TGGAGTTGGATGAAAAAAAGCAAGAGGTCCTGCTCGTCAAAACAACAATACATGATATTA 822
Query 784 TGAACAAGATGATTCGGGAAGTCCCAATAAAAAACCCTGTGTACTTAATGCTTGGTGCTT 843
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 823 TGAACAAGATGATTCGGGAAGTCCCAATAAAAAATCCTGTGTACTTAATGCTCGGTGCTT 882
Query 844 CATTTGGGTCAGCAGCCAAAGGAACTGGGCTCAAGGCTCTTGAGTTTGCTCTTTCGACGT 903
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 883 CATTTGGCTCAGCAGCCAAAGGAACTGGGCTCAAGGCTCTTGAGTTTGCTCTCTCGACGT 942
Query 904 GTGATTCAGTGGATATGTATGGTTTCACTGTGGACCCAGGTTATAAAGAGTGGACAAGAT 963
|||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||
Sbjct 943 GTGATTCAGTGGATATGTATGGATTCACAGTGGATCCAGGCTATAAAGAGTGGACAAGAT 1002
Query 964 ACTTTTCAGAATCCCGACAAGGACATACTCCTTTGCATGGTAGAGCTTACTACCAGATGA 1023
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1003 ATTTTTCAGAATCCCGACAAGGACATACTCCTTTGCATGGAAGAGCTTACTACCAGATGA 1062
Query 1024 TGGAATGCTTGGGTCTCATTAAAATACACTCTCCCATGAGAGCTGATCCAAACCGAGTCG 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1063 TGGAATGCTTGGGTCTCATTAAAATACACTCTCCCATGAGAGCTGATCCAAACCGTGTCG 1122
Query 1084 TGAAATGGGTGCCAAGCCGCAGTACTATTAGATCTGCAAGAATTGCAGCAGAGAAGCTCT 1143
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1123 TGAAATGGGTGCCAAGCCGCAGTACAATTAGATCTGCAAGAATTGCAGCAGAAAAGCTCT 1182
Query 1144 TAAGGAGAGTTGGAGCAGGATCTTCAGACCCATTAGCTTCATGCTCAAGAGTAAAGAAGA 1203
||||||||||||||||||||||| |||| ||||||||||||||||| | |||||||||||
Sbjct 1183 TAAGGAGAGTTGGAGCAGGATCTGCAGATCCATTAGCTTCATGCTCCATAGTAAAGAAGA 1242
Query 1204 GAAACAAAAACAAGCGTCCAATGGTCTCACACCTGAGAAAACCTGTGAGCGACCATCAAA 1263
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1243 GAAACAAAAACAAGCGTCCAATGGTCTCACACCTCAGAAAACCTGTGAGCGACCATCAAA 1302
Query 1264 ATTTTGTGAGAAGCACGAGCATGTACCCGGTGGAGCACAGTCCAGGACATGGTCAGCTTT 1323
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1303 AATTTGTGAGAAGCACGAGCATGTACCCAGTGGAGCACAGTCCAGGACATGGTCAGCTTT 1362
Query 1324 GCATTACACCAGCTGACTAAGAAACTGCACATCTA 1358
||||||||||||||||||||||||||||| |||||
Sbjct 1363 GCATTACACCAGCTGACTAAGAAACTGCATATCTA 1397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67168329210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5