BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937661
Length=524
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48930.1 | Symbols: EMB1080 | Nucleic acid-binding, OB-fold-... 870 0.0
AT5G23740.1 | Symbols: RPS11-BETA | ribosomal protein S11-beta ... 566 9e-161
> AT3G48930.1 | Symbols: EMB1080 | Nucleic acid-binding, OB-fold-like
protein | chr3:18140771-18142281 REVERSE LENGTH=821
Length=821
Score = 870 bits (471), Expect = 0.0
Identities = 508/525 (97%), Gaps = 5/525 (1%)
Strand=Plus/Plus
Query 1 GCGGGAGCTCAACATCAGCCATGGCGGAACAGACTGAGAAAGCTTTTCTTAAGCAGCCTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 GCGGGAGCTCAACATCAGCCATGGCGGAACAGACTGAGAAAGCTTTTCTTAAGCAGCCTA 132
Query 61 AGGTCTTCCTTAGCTCGAAGAAATCTGGAAAAGGG-AAGCGACCTGGGAAAGGTGGAAAC 119
|||||||||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||
Sbjct 133 AGGTCTTCCTTAGCTCGAAGAAATCTGG-AAAGGGAAAGAGACCTGGAAAAGGTGGAAAC 191
Query 120 CGTTTCTGGAAGAGCATTGGTTTGGGCTTTAAGACTCCTCGTGAAGCCATTGATGGAGCT 179
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 192 CGTTTCTGGAAGAACATTGGTTTGGGCTTCAAGACTCCTCGTGAAGCCATTGATGGAGCT 251
Query 180 TACGTTGACAAGAAATGCCCCTTCACTGGAACTGTTTCCATTAGAGGTCGTATCTTAGCC 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 TACGTTGACAAGAAATGCCCCTTCACTGGAACTGTTTCCATTAGAGGTCGTATCTTAGCT 311
Query 240 GGTACTTGCCACAGTGCTAAAATGCAGAGGACCATTATCGTGCGAAGGGATTACCTTCAC 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 GGTACTTGCCACAGTGCGAAAATGCAGAGGACCATTATCGTGCGAAGGGATTACCTTCAC 371
Query 300 TTTGTGAAGAAGTATCAGAGGTATGAGAAGAGGCATTCAAACATTCCTGCTCATGTATCT 359
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 372 TTTGTGAAGAAGTATCAGAGGTATGAGAAGAGGCATTCAAACATTCCGGCTCATGTCTCA 431
Query 360 CCATGCTTCCGTGTTAAGGAAGGAGACCATATCATCATTGGCCAATGCAGGCCATTGTCG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 CCATGCTTCCGTGTTAAGGAAGGAGACCATATCATCATTGGCCAATGCAGGCCATTGTCG 491
Query 420 AAGACAGTGAGGTTCAATGTGTTGAAGGTGATACCAGCTGGGTCTTCTTCTTCTTTTGGA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 492 AAGACAGTGAGGTTCAATGTGTTGAAGGTGATACCAGCTGGGTCTTCTTCTTCATTTGGA 551
Query 480 AAGAAGGCATTCACTGGAATGTAAGCTTAAGCTGCTGCTGTTGAT 524
||||||||||||||||||||||||||| ||||||| || ||||
Sbjct 552 AAGAAGGCATTCACTGGAATGTAAGCT---GCTGCTGTTGATGAT 593
> AT5G23740.1 | Symbols: RPS11-BETA | ribosomal protein S11-beta
| chr5:8008010-8009436 REVERSE LENGTH=827
Length=827
Score = 566 bits (306), Expect = 9e-161
Identities = 433/493 (88%), Gaps = 13/493 (3%)
Strand=Plus/Plus
Query 17 AGCCATGGCGGAACAGACTGAGAAAGCTTTTCTTAAGCAGCCTAAGGTCTTCCTTAGCTC 76
||||||||| || |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 103 AGCCATGGCTGAGCAGACTGAGAAAGCTTTTCTTAAGCAACCCAAGGTCTTCCTTAGCTC 162
Query 77 GAAGAAATCTGGAAAAGGGAAGCGACCTGGGAAAGGTGGAAACCGTTTCTGGAAGAGCAT 136
||||| |||||| ||||| ||| ||||||| ||||||||||||||||||||||||| |||
Sbjct 163 GAAGATATCTGGGAAAGGAAAGAGACCTGGTAAAGGTGGAAACCGTTTCTGGAAGAACAT 222
Query 137 TGGTTTGGGCTTT-AAGACTCCTCGTGAAGCCATTGATGGAGCTTACGTTGACAAG-AAA 194
||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| | |||
Sbjct 223 TGGTTTGGG-TTTCAAGACTCCTCGTGAAGCCATTGATGGAGCTTACATTGACA-GTAAA 280
Query 195 TGCCCCTTCACTGGAACTGTTTCCATTAGAGGTCGTATCTTAGCCGGTACTTGCCACAGT 254
|| || ||||||||||| ||||| || ||||| ||||||||||| |||||||||||||||
Sbjct 281 TGTCCATTCACTGGAACCGTTTCTATCAGAGGACGTATCTTAGCTGGTACTTGCCACAGT 340
Query 255 GCTAAAATGCAGAGGACCATTATCGTGCGAAGGGATTACCTTCACTTTGTGAAGAAGTAT 314
|| || |||||||| ||||| || || || ||| ||||||||||||||||||||||||||
Sbjct 341 GCCAAGATGCAGAGAACCATCATTGTTCGTAGGAATTACCTTCACTTTGTGAAGAAGTAT 400
Query 315 CAGAGG-TATGAGAAGAGGCATTCAAACATTCCTGCTCATGTATCTCCATGCTTCCGTGT 373
|| | | ||||||||||| ||||| ||||| ||||| ||||| || || || ||||||||
Sbjct 401 CA-ACGATATGAGAAGAGACATTCCAACATCCCTGCCCATGTCTCACCGTGTTTCCGTGT 459
Query 374 TAAGGAAGGAGACCATATCATCATTGGCCAATGCAGGCCATTGTCGAAGACAGTGAGGTT 433
|||||||| |||||| |||||||||||||||||||||| ||||||||||| || |||||
Sbjct 460 CAAGGAAGGTGACCATGTCATCATTGGCCAATGCAGGCCGTTGTCGAAGACGGTTAGGTT 519
Query 434 CAATGTGTTGAAGGTGATACCAGCTGGGT-CTTCTTCTTCTTTTGG-AAAGAAGGCATTC 491
||||||| |||||||||| ||||| |||| | ||| | |||| || ||| ||||| |||
Sbjct 520 CAATGTGCTGAAGGTGATTCCAGC-GGGTGCATCTGC--CTTT-GGTAAA-AAGGCCTTC 574
Query 492 ACTGGAATGTAAG 504
|||||| ||||||
Sbjct 575 ACTGGAGTGTAAG 587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25066839353
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5