BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937663
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23900.1 | Symbols: | Pectin lyase-like superfamily protein... 313 4e-84
> AT2G23900.1 | Symbols: | Pectin lyase-like superfamily protein
| chr2:10174515-10176626 FORWARD LENGTH=1612
Length=1612
Score = 313 bits (169), Expect = 4e-84
Identities = 487/631 (77%), Gaps = 60/631 (10%)
Strand=Plus/Plus
Query 152 TTGAACATGCGGCCTTGAATTGTCGGAGACAAAGTGCGA-TTTTGACGGATTTTGGAGCT 210
||||| || ||| ||||||||||| | ||| | || | ||||||| || ||||||||
Sbjct 172 TTGAATATATGGCGTTGAATTGTCGAAAACATACCGC-AGTTTTGACAGAATTTGGAGC- 229
Query 211 A-TTGGAGATGGAAAAACCTCAAACACGAAAGCGTTTAGAGAAGCCATAAGAAACCTTAC 269
| |||| |||||||| ||||| ||||| |||||||| | ||||||||||| || ||| |
Sbjct 230 AGTTGGTGATGGAAAGACCTCGAACACAAAAGCGTTCAAAGAAGCCATAACCAAGCTTGC 289
Query 270 TTCGAGA-GCAGGCGATGGTGGAAG-CCAACTCATTGTCCCGA-AAGGGAAATGGCTAAC 326
|| | | |||| ||| ||||| || ||||||||||| || | ||| |||||||||||
Sbjct 290 -TCCAAAGGCAGCCGACGGTGG-AGTGCAACTCATTGTTCC-ACCAGGAAAATGGCTAAC 346
Query 327 CGGAAGTTTCAACCTCACGAGCCATTTTACTTTGCACATC-AAAGAAGGTGCAACCATCC 385
|||||||||||||||||| ||||||||||||||| |||| ||| |||||||||| || |
Sbjct 347 CGGAAGTTTCAACCTCACCAGCCATTTTACTTTGTTCATCCAAA-AAGGTGCAACTATTC 405
Query 386 TTGCTTCTCAGGACGAATCTGAATATCCCA-TGCTT-CAAGTGTTGCCCTCATAC--A-- 439
||||||||||||| |||||||||||||| | || || || | ||||| |||||| |
Sbjct 406 TTGCTTCTCAGGATGAATCTGAATATCC-AGTGGTTGCACCT-TTGCCATCATACGGACA 463
Query 440 -G-A-GATA--CA--AGG-------TTTGCTAGTTTAATCTAC-GGAAGCAA-CCTAACC 483
| | || | || ||| ||||||||| |||||| | || | ||| ||||||
Sbjct 464 AGGAAGAGATGCAGCAGGACCAACATTTGCTAGTCTAATCT-CTGGCA-CAAACCTAACT 521
Query 484 GATGTTGTTATCGCCGGTGACAAAGGGACAATCAATGGACAAGGGAAGT-CATGGTGGGC 542
|||||||||||| ||||| |||| || || ||||| || ||||| |||| | |||||||
Sbjct 522 GATGTTGTTATCACCGGTAACAACGGAACGATCAACGGGCAAGGAAAGTAC-TGGTGGGT 580
Query 543 AAAGTATCGAAATGGTGG-TTTCAAGTCCAT-ACAAAGACCA-ATGTTAATCGAGATTCA 599
|||||||| | |||||| ||| ||| || |||| |||| | ||||||||| ||
Sbjct 581 GAAGTATCGCAGTGGTGGATTT-AAGGGGATCACAA-GACCTTACAC-AATCGAGAT-CA 636
Query 600 ATC--CTCTGAAAATGTTCAGATTTCGAATATCA-ATTTGATCGATTCTCC-G-ATGTGG 654
|| |||| |||| |||||||| ||||| |||| | | |||||||| || | ||| |
Sbjct 637 -TCTTCTCTCAAAACGTTCAGATCTCGAACATCACAATC-ATCGATTCGCCTGCATG-GA 693
Query 655 AGTATCCATCCTGTGTATTGCAGGAACGTCATCATTAAAGGTGTTAAAATCTCTAA-TCC 713
| ||| |||||||| ||||||| || |||||| | ||||| |||| || ||| |||
Sbjct 694 A-TATTCATCCTGTATATTGCAACAATGTCATCGTCAAAGGCGTTACCAT-TCTTGCTCC 751
Query 714 TATCGATTC-CGCTAACACGGATGGAATCAA 743
||||||||| | |||| || |||||||||||
Sbjct 752 TATCGATTCTC-CTAATACCGATGGAATCAA 781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67820936295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5