BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937675
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49070.1 | Symbols: | Protein of unknown function (DUF677) ... 1541 0.0
> AT3G49070.1 | Symbols: | Protein of unknown function (DUF677)
| chr3:18192479-18193729 REVERSE LENGTH=1251
Length=1251
Score = 1541 bits (834), Expect = 0.0
Identities = 1004/1087 (92%), Gaps = 8/1087 (1%)
Strand=Plus/Plus
Query 66 ACAGCTTCGGGTAGTTCAAGTCCCAAAGATGGTGATGATGTGGATGTTCGAGAAGAATAT 125
|||||||| |||||||||| |||||||||||||| ||| |||||||| ||||| ||||||
Sbjct 166 ACAGCTTCAGGTAGTTCAAATCCCAAAGATGGTGCTGACGTGGATGTCCGAGAGGAATAT 225
Query 126 GCAAACGCCTTTCGTACAGAGTCATACAATCAGTTTTGGACACGTGTCATACA-CTTAAG 184
||||||||||||||||| || ||||||||||| ||||||||||||||| |||| | ||||
Sbjct 226 GCAAACGCCTTTCGTACGGAATCATACAATCACTTTTGGACACGTGTCGTACAGC-TAAG 284
Query 185 CCGTAAAAAGTCCAC-G-GT-GTCTTCTTCTTC-T-T-CACCAATTGAATCATCCTCCAC 238
||| ||||||||| | | || ||||||||||| | | ||||||| ||||||||||||||
Sbjct 285 CCGCAAAAAGTCCGCAGTGTCTTCTTCTTCTTCTTCTCCACCAATCGAATCATCCTCCAC 344
Query 239 GTCAGCTCGTCTAATGTCCTATCGCCTCTTCGCACATAATCTCCTAGACCCGGATCCAAA 298
|||||||||||| ||||| |||||||| ||||| || ||||| ||||||||||||| ||
Sbjct 345 GTCAGCTCGTCTCATGTCTTATCGCCTATTCGCGCACAATCTTCTAGACCCGGATCTGAA 404
Query 299 TACCATTACCCGGATACTGGATGTATCCCGGGTCGGACGACCCACCCGAACTCTTCTCAC 358
||||||||| |||||||| ||||||||||||||||| |||| |||||||||||||||| |
Sbjct 405 TACCATTACTCGGATACTAGATGTATCCCGGGTCGGGCGACACACCCGAACTCTTCTCTC 464
Query 359 TGATTACTTCTTGGAGACGGCAAATGCTTTCTTGCTTTGCACGTTATTACTTAAAAACAT 418
|||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||
Sbjct 465 TGATTACTTCTTGGAGACGGCAAACGCTTTCTTGCTTTGCACGCAATTACTAAAAAACAT 524
Query 419 TCATCGTCTTCGTTCTAAATACGAGTCTTTGAAACCTAAATTTCAATCGGAGAATCATAA 478
||||| |||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 525 TCATCATCTTCGTTCTAAATACGAGTCTTTGAAACCAAAATTTCATTCGGAAAATCATAA 584
Query 479 TTCATTGGATTTAGTAGACCAATTCACGGAGATATCAAAATGGTTTGACCCGTTTATCTC 538
|||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 585 TTCATTGGCTTTAATAGACCAATTCACGGAGATATCAAAATGGTTCGACCCGTTTATCTC 644
Query 539 GTCGGGTTCTAGGATCCAGCTAATCAGATCCAGCTGTTTAGACTTGCTAAAACGGCTAGA 598
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 645 GTCGGGTTCTAGGATCCAGCTAATCAGATCCGGCTGTTTATACTTGCTAAAACGGCTAGA 704
Query 599 GTCAAGTCGAGACAAGACACGAGCCAAACTCAAGCTTATCAACGGACTAACTCATAGCTC 658
||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 705 GTCGAGACGAGACAAGACACGAGCCAAACTTAAGCTTATCAACGGACTAACTCATAGCTC 764
Query 659 AGGGCTTCTCGTTTTGGCTCTAACAACTACATTGATTGTAACCATAGCCTCTCACGCCTT 718
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 765 AGGGCTTCTCGTTTTGGCTCTAACCACTACATTGATTGTAACCATAGCCTCTCACGCTTT 824
Query 719 TGCTTTGTTTATAGCCGGTCCGACTCTTTTAACCGGTCGATTCAAACCAGCCGGGTTAAG 778
|||||||||| |||||| ||||||||||||| || || ||| ||||||||||| |||||
Sbjct 825 TGCTTTGTTTCTAGCCGCTCCGACTCTTTTAGCCTCTCAATTTAAACCAGCCGGTTTAAG 884
Query 779 AAATAAGTTGACGAAAACAGCGGCTCGACTCGACGTGGCTGCGAAAGGTACTTACATTTT 838
|||||||| || |||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 885 GAATAAGTTAACAAAAACAGCGGCTCGGCTCGACGTTGCTGCCAAAGGTACTTACATTTT 944
Query 839 AAGCCGTGATTTAGACACGATAAGCCGACTAGTAACTCGGATTAACGATGAAGTGGACCA 898
|||||||||||| |||||||||||| ||||||| || || ||||||||||||||| ||||
Sbjct 945 AAGCCGTGATTTGGACACGATAAGCAGACTAGTGACACGAATTAACGATGAAGTGAACCA 1004
Query 899 TGTTCGAGCCATGGCTGAGTTTTGGGTTGGGAGAGGGTCGGGTCGAGTTCGAGGCAGTGA 958
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1005 TGTTCGAGCCATGGCTGAGTTTTGGGTTGGTAGAGGGTCGGGTCGGGTTCGAGGCAGTGA 1064
Query 959 AGAAGTGGCTCGAGAGTTAAAGAGATGTGAAGAAAGCTTTAGGGAAGAACTTGATGAGCT 1018
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1065 AGAAGTTGCTCGAGAGTTGAAGAGATGTGAAGAAAGCTTTAGTGAAGAACTTGATGAGCT 1124
Query 1019 TGAAAAACATATCTACTTGTGTTTCATGACTATTAATCGGGCAAGGAATCTTGTTGTTAG 1078
|||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1125 TGAAGAACATATTTACTTGTGTTTCATGACTATTAATCGGGCAAGGAATCTTCTTGTTAA 1184
Query 1079 AGAGGTTTTGGATTCGGATGATCCACCTAATTGTTCATTCGCTCCCAAATCCaaaaaaaa 1138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AGAGATTTTGGATTCGGATGATCCACCTAATTGTTCATTCGCTCCCAAATCCAAAAAAAA 1244
Query 1139 aTTGTAG 1145
|||||||
Sbjct 1245 ATTGTAG 1251
Score = 86.1 bits (46), Expect = 7e-16
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 21 ATGGGTATAAAAGTTTCATCAAAGATCAAAAGAATTCTCGCATCGACAG 69
|||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATGGGTATAAAAGTTTCATCAAAGATCAAAAGAATTCTCGCATCCACAG 49
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57178420755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5