BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937676
Length=1340
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49080.1 | Symbols: | Ribosomal protein S5 domain 2-like su... 2159 0.0
> AT3G49080.1 | Symbols: | Ribosomal protein S5 domain 2-like
superfamily protein | chr3:18194154-18196727 REVERSE LENGTH=1709
Length=1709
Score = 2159 bits (1169), Expect = 0.0
Identities = 1287/1344 (96%), Gaps = 7/1344 (1%)
Strand=Plus/Plus
Query 1 TCTC-AGTGTTCTTCTTCACCATCATGCTCTCTCGTTTATTCCTTAGACCTTCGAATCTC 59
|||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 47 TCTCAAGTGTTCGTCTTCACCATCATGCTCTCTCGTTTATTCCTTAGACATTCGAATCTC 106
Query 60 CGTTACGTAACACTAGTTACATCGAAATCAAATTCTCAGATCTTCTCTTCGTTTATTCGT 119
|||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 107 CGTTTCGTAACCCTAGTTTCATCGAAATCAAATTCTCAGATCTTCTCTTCGTTTATTCGT 166
Query 120 CCGCTTTCCACTAACAGTACCGGCGGCGGCGGAAATGGTGACGGGAATGGTCGTAATCGG 179
|||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 167 CCGCTTTCGACTAACAGTAGCGGCGGCGGAGGAAATGGTGACGGGAATGGTCGTAATCGG 226
Query 180 AATGATGTTCCGTGGAGTTTTACTGGAGTAAACGATGATAAGTCTGGTCCTTTCTCTTCC 239
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 227 AATGATGTTCCGTGGAGTTTCACTGGAGTAAACGATGATAAGTCTGGACCTTTCTCTTCC 286
Query 240 GATGATTCTTGGGGTTCTTCTGGAGTTGCAGGATCTGGGTCT-GTTGGTGGAGATGGGAA 298
|||||||||| |||||||||||||||||||||||| ||| | ||||||||| |||||
Sbjct 287 GATGATTCTTTTGGTTCTTCTGGAGTTGCAGGATCT-GGTTTACCTGGTGGAGAGGGGAA 345
Query 299 ATGGCCGGAGGAGCCTAAGAGATGGAATATGAAA-GAGGAAGAGGATAAGGTTGTGTTTG 357
|||||||||||||||||||||||||||||| ||| ||||||||||| || ||||||||||
Sbjct 346 ATGGCCGGAGGAGCCTAAGAGATGGAATAT-AAAGGAGGAAGAGGAAAAAGTTGTGTTTG 404
Query 358 ATACTGGTGGTGAAGTCGGTCAAGGGATTGAGACTGGTCGCGAGAGGAGAGGCAATGAAT 417
|||||||||||||||| |||||||||||||||||| ||||||||||||| || |||||||
Sbjct 405 ATACTGGTGGTGAAGTAGGTCAAGGGATTGAGACTAGTCGCGAGAGGAGGGGTAATGAAT 464
Query 418 GGGAGGAGACTAAGCGATGGGATATGAAGAAGGGAGAGGAGAAAGTTGTGTTTGGT-GCT 476
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 465 GGGAGGAGACTAAGAGATGGGATATGAAGGAGGGAGAGGAGAAAGTTGTGTTTGGTGGC- 523
Query 477 GGAGAAGATGTGGTGGATGGGTTTGGAATTAGAGGAGAGGTGAAATCTAATGAATGGGAT 536
|||| ||||| |||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 524 GGAGGAGATGAGGTGGATGGGTTTGGAATCAGGGGAGAGGTGAAATCTAATGAATGGGAT 583
Query 537 GTGTCAAAGCCGTGGAATTTGAAAGAAGAGGAGGAGGGAGTTGTGTTTGATACTGGTGGT 596
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 584 GTGTCAAAGCCATGGAATTTGAAAGAGGAAGAGGAGGGAGTTGTGTTTGATACTGGTGGT 643
Query 597 GAAGTGCCGTTTAGCTTTGAGAATAGCTTGGAAATGGCGGAGGAAGAGCGTGTGAAGAAG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 GAAGTGCCGTTTAGCTTTGAGAATAGCTTGGAAATGGCGGAGGAAGAGCGTGTGAAGAAG 703
Query 657 GAGTTGATTGAGAAAGAGGAGAAGGAGCTTCTTGAGGTTATCAAGGGTCCTGATCGAGCA 716
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 GAGTTGATTGAGAAGGAAGAGAAGGAGCTTCTTGAGGTTATCAAGGGTCCTGATCGAGCA 763
Query 717 TTTGGAGACCTTATTGCTAAGTCGGGTATAACAGATGAAATGCTAGATAGTTTAATAGCC 776
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 764 TTTGGAGACCTTATTGCTAAGTCAGGTATAACAGATGAAATGCTAGATAGTTTAATAGCC 823
Query 777 TTGAAGGATTTCCAAGGGGTCGAAGGATTGCCTCCTCTGACTGAGATTGAAAACCTGCGC 836
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 824 TTGAAAGATTTCCAAGGGGTCGAAGGATTACCTCCTCTGACTGAGATTGAAAACCTGCGT 883
Query 837 CGTGAGAAAAGTTCAAAGAAGTCCTCAAGAGCTGAGATTGAACTCCAGATGCAAGAGGAC 896
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 884 CGTGAGAAAAGTTCAAAGAAGTCATCAAGAGCTGAGATAGAACTCCAGATGCAAGAGGAC 943
Query 897 ATTGCCAAAGCACGGGTGAGACAGGTTGACGAAACAGGTAGAGCCTATGGAACTGGAAGA 956
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 944 ATTGCCAAAGCACGGGTGAGACAAGTTGACGAAACAGGTAGAGCCTATGGAACTGGAAGA 1003
Query 957 AGAAAATGTAGCATTGCCCGTGTTTGGATTCAACCTGGGGAAGGAAAATTTCAAGTTAAT 1016
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 AGAAAATGTAGCATTGCACGTGTTTGGATTCAACCTGGGGAAGGAAAATTTCAAGTTAAT 1063
Query 1017 GAAAAAGAATTTGATGCCTATTTCCCTATGCTTGATCATCGCGCTGCTCTTCTACGCCCA 1076
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 GAAAAAGAATTTGATGTCTATTTCCCTATGCTTGATCATCGCGCTGCTCTTCTACGCCCA 1123
Query 1077 CTTGCTGAAACCAAAACCTTGGGTCGGTGGGATATTAAGTGCACTGTTAAAGGCGGTGGT 1136
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1124 CTTGCTGAAACCAAAACCTTGGGTCGTTGGGATATTAAGTGCACTGTTAAAGGCGGTGGT 1183
Query 1137 ACTACAGGTCAAGTCGGAGCTATTCAATTGGGTATCAGCAGGGCACTGCAAAACTGGGAA 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 ACTACAGGTCAAGTCGGAGCTATTCAATTGGGTATCAGCAGGGCACTGCAAAACTGGGAA 1243
Query 1197 CCAGATATGCGGACATCACTTCGAGCTGCTGGTTTTTTGACAAGAGACTCTCGAGTTGTG 1256
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1244 CCAGATATGCGGACATCACTTCGAGCTGCTGGTTTCTTGACAAGAGACTCTCGAGTTGTG 1303
Query 1257 GAAAGGAAGAAACCTGGAAAAGCCAAGGCTAGAAAGAGCTTCCAATGGGTCAAACGTTAA 1316
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1304 GAAAGAAAGAAACCTGGAAAAGCCAAGGCAAGAAAGAGCTTCCAATGGGTCAAACGTTGA 1363
Query 1317 ATCCGAAAACCCGTACAATATCTT 1340
||||||||| ||||| |||||||
Sbjct 1364 ATCCGAAAATGCGTACTATATCTT 1387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65963516130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5