BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937677

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G49100.1 | Symbols:  | Signal recognition particle, SRP9/SRP...   547    2e-155


> AT3G49100.1 | Symbols:  | Signal recognition particle, SRP9/SRP14 
subunit | chr3:18196839-18198457 FORWARD LENGTH=576
Length=576

 Score =  547 bits (296),  Expect = 2e-155
 Identities = 325/339 (96%), Gaps = 1/339 (0%)
 Strand=Plus/Plus

Query  12   TGAATCAAGATGGTTTACATCGCTTCATGGGACGAATTCGTTGATCGATCTGTTCAGATT  71
            ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| ||
Sbjct  97   TGAATCAAGATGGTTTATATCGCATCGTGGGACGAATTCGTTGATCGATCTGTTCAGCTT  156

Query  72   TTTCGAGCTGATCCCGAATCTACTCGGTATGTGATGAAGTATAGACATTGTGACGGAAAG  131
            |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct  157  TTTCGAGCTGATCCGGAATCTACTCGGTATGTGATGAAGTATAGACACTGTGACGGCAAG  216

Query  132  TTAGTTCTCAAGGTTACTGATAACAAAGAGTGTCTCAAGTTCAAGACAGACCAAGCACAA  191
            || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  217  TTGGTTCTTAAGGTTACTGATAACAAAGAGTGTCTCAAGTTCAAGACAGACCAAGCACAA  276

Query  192  GAAGCGAAGAAGATGGAGAAACTGAATAACATATTTTTTACCCTCATGGCCAGAGGACCT  251
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  277  GAAGCGAAGAAGATGGAGAAACTGAATAACATATTTTTCACCCTCATGGCCAGAGGACCT  336

Query  252  GATGTCGATCTCTCTGAAGTCACCGGGAAAGAACAGATGGAGACACAGCCTGCCAAGAAA  311
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  337  GATGTCGATCTCTCAGAAGTCACCGGGAAAGAACAGATGGAGACACAGCCTGCCAAGAAA  396

Query  312  GGAAGAGGAAGGAAGCAATAAGTCTCATGAATATGTTTT  350
            ||||||||||||||||||||||||||| || | ||||||
Sbjct  397  GGAAGAGGAAGGAAGCAATAAGTCTCAAGATT-TGTTTT  434



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16487821672


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5