BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937685
Length=2944
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49130.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/su... 147 8e-34
AT5G06520.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/su... 141 4e-32
> AT3G49130.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
RNA-binding domain-containing protein | chr3:18210453-18211708
FORWARD LENGTH=924
Length=924
Score = 147 bits (79), Expect = 8e-34
Identities = 110/125 (88%), Gaps = 2/125 (2%)
Strand=Plus/Plus
Query 2148 TTGATGAAGGAAGTTGTTATGAAACCTCAGTTTAAGTTTATGGAGCCAACTAATCAGAA- 2206
||||||||| |||||||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct 676 TTGATGAAGAAAGTTGTTATGAAACCTCAGTTTAAGTTCATGGAGCCAACAAAT-AGCGT 734
Query 2207 GTTCAGTTTGTATAATGTGGTTGTCGATGCGTATTCCAGAGTAGTATACCCTTTTGATGA 2266
|||| |||| |||||||| ||||| ||||||||||| ||||||||| | |||| ||||||
Sbjct 735 GTTCGGTTTATATAATGTTGTTGTTGATGCGTATTCTAGAGTAGTAAAGCCTTCTGATGA 794
Query 2267 TGCTT 2271
|||||
Sbjct 795 TGCTT 799
Score = 111 bits (60), Expect = 3e-23
Identities = 79/88 (90%), Gaps = 2/88 (2%)
Strand=Plus/Plus
Query 2584 CTTCAACGTGGTTGATGCAAACTGCAGGACCCA-AGGAACCAGAGACAAAGAGACAAAAG 2642
|||||| | || |||||||||||||| || ||| ||||||||||| ||||||||||||||
Sbjct 803 CTTCAATGGGGATGATGCAAACTGCACGA-CCAGAGGAACCAGAGGCAAAGAGACAAAAG 861
Query 2643 TTTGACGAGTCAGCTCTTGTTCCAGAAG 2670
|||||||||||||||||| ||||||||
Sbjct 862 TTTGACGAGTCAGCTCTTAATCCAGAAG 889
> AT5G06520.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein | chr5:1987250-1989372 REVERSE
LENGTH=2040
Length=2040
Score = 141 bits (76), Expect = 4e-32
Identities = 257/338 (76%), Gaps = 37/338 (11%)
Strand=Plus/Plus
Query 1450 TCCCTGGAAAGGGGATCACACTCAAGGAGCTTGGTATTATTAAGCTCACAGCGCAGTTTG 1509
|||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1433 TCCCTGAAAAGGAGATCACACTCAAGGAGCTTGGTATTATTAAGCTCACAGCACAGTTTA 1492
Query 1510 TGGTGCGGTATGGGTATGATTTTTG-GT-GTGTTTTAACGGAT-AGAGTG-TCTACGAAC 1565
||| |||||| ||| |||| ||||| | | |||| | ||| |||||| | | ||||
Sbjct 1493 TGGCGCGGTACGGG-ATGAATTTTGTGCAGGGTTTGA--GGAAGAGAGTGGT-TGGGAAC 1548
Query 1566 --TCATTTTTTCAGTTCTTGAA-TC--CTT-TCGATAAGCAG-TTCCGTTTTTACTGTGG 1618
||| ||| |||| ||| | || || | ||| |||| ||| |||||||| |||
Sbjct 1549 CCTCAGTTTA--AGTTTTTGGAGTCAACTAATA-ATA-GCAGGTTCAGTTTTTACAATGG 1604
Query 1619 GCTT-TTACTTGCGTA--CACCGGAGTGCTAAAACCTTCTAAAATGCTGAAG-AAGCCTG 1674
|||| ||| ||||||| || || || ||| ||||| |||||||||| | ||| ||
Sbjct 1605 GCTTGTTA-TTGCGTATTCAA-GG-GTTTTAATGCCTTCCAAAATGCTGA-GCAAGAGTG 1660
Query 1675 ATGCTTGTACGGTGGCT-TTACTTGAGGGTTTTTTCCACC-GACTTCAACTGTGGAA--G 1730
||| |||||||| | | || |||| |||||| || | | |||||| | ||||| |
Sbjct 1661 ATGATTGTACGGCGACCGTTG-TTGATGGTTTTCTC-AGTTGTCTTCAA-T-TGGAAAAG 1716
Query 1731 CTG-GAGGAGGGAGTGGAAACGGCTATGATTGATTTGC 1767
| | |||||||||||||| | | ||||||||||||||
Sbjct 1717 C-GAGAGGAGGGAGTGGATATTGATATGATTGATTTGC 1753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 146336972731
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5