BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937698 Length=376 Score E Sequences producing significant alignments: (Bits) Value AT3G52580.1 | Symbols: | Ribosomal protein S11 family protein ... 183 8e-46 > AT3G52580.1 | Symbols: | Ribosomal protein S11 family protein | chr3:19503223-19504973 FORWARD LENGTH=826 Length=826 Score = 183 bits (99), Expect = 8e-46 Identities = 199/242 (82%), Gaps = 28/242 (12%) Strand=Plus/Plus Query 153 GAGGATGTGACTCCAATCCCAACCGACAG-ACCCGCAGAAAGGGTGGCAGAAGAGGA-G- 209 ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | Sbjct 486 GAGGATGTGACTCCAATCCCAACCGACAGTACCCGCAGAAAGGGTGGAAGAAGAGGAAGG 545 Query 210 AGttttt---tt-tttGGCGTCGC-T-GGATCCTC-TTATGG-GCTCTACTCTCAATGTT 261 || | | || |||||| || | | ||||| || ||||| ||| | |||||||||| Sbjct 546 AGGCTCTGAGTTATTTGGCCTCTCGTTGGATC-TCCTTATGTAGCT-T--TCTCAATGTT 601 Query 262 TCATAATTGTTCTTTCTTTCTT--AA--GAGTTTTG-AATTTACTATGCTTTATTATAGT 316 |||| ||||| |||||| || || |||||||| |||| |||||||||| ||||||| Sbjct 602 TCATT-TTGTTTTTTCTTAGTTTGAAAAGAGTTTTGGAATT-ACTATGCTTTGTTATAGT 659 Query 317 ATCAACTCTGAACAGCTTTGGATCTTCTGT-TATATG-C--TAAGATATTCAAAA-TTGG 371 ||||||||||||||||||||||||| | | | |||| | |||||||||||||| |||| Sbjct 660 CTCAACTCTGAACAGCTTTGGATCTTTT-TCTGTATGACCATAAGATATTCAAAAATTGG 718 Query 372 TA 373 || Sbjct 719 TA 720 Score = 159 bits (86), Expect = 1e-38 Identities = 121/137 (88%), Gaps = 6/137 (4%) Strand=Plus/Plus Query 18 CACATGACTGATTTGTCTGGACGGGAAACCCGTGTTCGCATCACTGGTGGAATGAAGGTG 77 ||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 225 CACGTGACTGATTTGTCTGGACGGGAAACACTTGTTCGCATCACTGGTGGAATGAAGGTG 284 Query 78 AAAGCCGACAGAGATGAGAGTC-TGCACCGTATTTGCAGATATGCTTGCTGCACAAAATG 136 |||||||||||||||||| || | |||| ||| || | ||||||||| |||||| ||| Sbjct 285 AAAGCCGACAGAGATGAG--TCCT-CACCTTAT--GCTGCTATGCTTGCGGCACAAGATG 339 Query 137 TCGCTTAGCGATGCAAG 153 | ||| ||||||||||| Sbjct 340 TTGCTCAGCGATGCAAG 356 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17694247648 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5