BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937698

Length=376
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G52580.1 | Symbols:  | Ribosomal protein S11 family protein ...   183    8e-46


> AT3G52580.1 | Symbols:  | Ribosomal protein S11 family protein 
| chr3:19503223-19504973 FORWARD LENGTH=826
Length=826

 Score =  183 bits (99),  Expect = 8e-46
 Identities = 199/242 (82%), Gaps = 28/242 (12%)
 Strand=Plus/Plus

Query  153  GAGGATGTGACTCCAATCCCAACCGACAG-ACCCGCAGAAAGGGTGGCAGAAGAGGA-G-  209
            ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | 
Sbjct  486  GAGGATGTGACTCCAATCCCAACCGACAGTACCCGCAGAAAGGGTGGAAGAAGAGGAAGG  545

Query  210  AGttttt---tt-tttGGCGTCGC-T-GGATCCTC-TTATGG-GCTCTACTCTCAATGTT  261
            ||  | |   || |||||| || | | ||||| || |||||  ||| |  ||||||||||
Sbjct  546  AGGCTCTGAGTTATTTGGCCTCTCGTTGGATC-TCCTTATGTAGCT-T--TCTCAATGTT  601

Query  262  TCATAATTGTTCTTTCTTTCTT--AA--GAGTTTTG-AATTTACTATGCTTTATTATAGT  316
            ||||  ||||| ||||||  ||  ||  |||||||| |||| |||||||||| |||||||
Sbjct  602  TCATT-TTGTTTTTTCTTAGTTTGAAAAGAGTTTTGGAATT-ACTATGCTTTGTTATAGT  659

Query  317  ATCAACTCTGAACAGCTTTGGATCTTCTGT-TATATG-C--TAAGATATTCAAAA-TTGG  371
             ||||||||||||||||||||||||| | | | |||| |  |||||||||||||| ||||
Sbjct  660  CTCAACTCTGAACAGCTTTGGATCTTTT-TCTGTATGACCATAAGATATTCAAAAATTGG  718

Query  372  TA  373
            ||
Sbjct  719  TA  720


 Score =  159 bits (86),  Expect = 1e-38
 Identities = 121/137 (88%), Gaps = 6/137 (4%)
 Strand=Plus/Plus

Query  18   CACATGACTGATTTGTCTGGACGGGAAACCCGTGTTCGCATCACTGGTGGAATGAAGGTG  77
            ||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct  225  CACGTGACTGATTTGTCTGGACGGGAAACACTTGTTCGCATCACTGGTGGAATGAAGGTG  284

Query  78   AAAGCCGACAGAGATGAGAGTC-TGCACCGTATTTGCAGATATGCTTGCTGCACAAAATG  136
            ||||||||||||||||||  || | |||| |||  || | ||||||||| |||||| |||
Sbjct  285  AAAGCCGACAGAGATGAG--TCCT-CACCTTAT--GCTGCTATGCTTGCGGCACAAGATG  339

Query  137  TCGCTTAGCGATGCAAG  153
            | ||| |||||||||||
Sbjct  340  TTGCTCAGCGATGCAAG  356



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17694247648


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5