BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937716
Length=268
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24775.1 | Symbols: | transposable element gene | chr5:8503... 195 2e-49
AT2G06910.1 | Symbols: | transposable element gene | chr2:2818... 176 9e-44
AT4G03800.1 | Symbols: | transposable element gene | chr4:1743... 172 1e-42
> AT5G24775.1 | Symbols: | transposable element gene | chr5:8503317-8506432
FORWARD LENGTH=3116
Length=3116
Score = 195 bits (105), Expect = 2e-49
Identities = 111/114 (97%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 155 GAGTTATTCATGTATCTCAAGTTTGGATGCACTTATATGGGGAAGGGTTTATGCCGGGGT 214
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 182 GAGTTCTTCATGTATCTCAAGTTTGGATGCACTTATATGGGGAAGGGTTTATGTCGGGGT 241
Query 215 ACAAAGTTTGGTTTATGCATGGAGAGAATGAGTCAATGGTGAATTATGGTAGTT 268
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 242 ACAAAGTTTGGTTCATGCATGGAGAGAATGAGTCAATGGTGAATTATGGTAGTT 295
Score = 167 bits (90), Expect = 5e-41
Identities = 122/137 (89%), Gaps = 4/137 (3%)
Strand=Plus/Plus
Query 21 ATGTCTTCTTCGAATCCGTTTAATTATTTTCGTTCATGGATGGACCAGCCCATGCGTGAT 80
||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCTTCTTCAAATCCGTTTAATTATTTTCGATCATGGATGGACCAGCCCATGCGTGAT 60
Query 81 CC-CGTGACGGAGTTACTTACGCCAGAGTATGCACAAGGTCTTAAACAATTCATGGCATT 139
|| | | ||||||||||| | ||| || |||||| |||||||||||||||||||||||||
Sbjct 61 CCGC-TAACGGAGTTACTAATGCCGGAATATGCAGAAGGTCTTAAACAATTCATGGCATT 119
Query 140 TGC-AGCAAACCAACCG 155
|| | |||| ||||||
Sbjct 120 CGCGA-CAAATCAACCG 135
> AT2G06910.1 | Symbols: | transposable element gene | chr2:2818439-2821477
FORWARD LENGTH=3039
Length=3039
Score = 176 bits (95), Expect = 9e-44
Identities = 108/114 (95%), Gaps = 1/114 (1%)
Strand=Plus/Plus
Query 155 GAGTTATTCATGTATCTCAAGTTTGGATGCACTTATATGGGGAAGGGTTTATGCCGGGGT 214
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 35 GAGTTTTTCATGTATCTCAAGTTTGGATGCACTTA-ATGGGGAAGGGTTTATGCCAAGGT 93
Query 215 ACAAAGTTTGGTTTATGCATGGAGAGAATGAGTCAATGGTGAATTATGGTAGTT 268
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 94 ACAAAGTTTGGTTCATGCATGGAGAGAATGAGTCAATGGTGAATTATGGAAGTT 147
> AT4G03800.1 | Symbols: | transposable element gene | chr4:1743791-1748332
REVERSE LENGTH=4542
Length=4542
Score = 172 bits (93), Expect = 1e-42
Identities = 107/114 (94%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 155 GAGTTATTCATGTATCTCAAGTTTGGATGCACTTATATGGGGAAGGGTTTATGCCGGGGT 214
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 191 GAGTTCTTCCTGTATCTCAAGTTTGGATGCACTTATATGGGGAAGGGTTTATGCCAAGGT 250
Query 215 ACAAAGTTTGGTTTATGCATGGAGAGAATGAGTCAATGGTGAATTATGGTAGTT 268
||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 251 ACAAAGTTTAGTTCATGCATGGAGAAAATGAGTCAATGGTGAATTATGGTAGTT 304
Score = 161 bits (87), Expect = 2e-39
Identities = 120/136 (88%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 21 ATGTCTTCTTCGAATCCGTTTAATTATTTTCGTTCATGGATGGACCAGCCCATGCGTGAT 80
||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1 ATGGCTTCTTCGAATCCGTTTAATTATTTTCGATCATGGATGGACCAGCCCACGCGTGAT 60
Query 81 CCCGTGAC-GGAGTTACTTACGCCAGAGTATGCACAAGGTCTTAAACAATTCATGGCATT 139
|| || | |||||| || | | | || |||| | |||||||||||||||||||||||||
Sbjct 61 CC-GTTAAAGGAGTTGCTAATGTCGGAATATGTAGAAGGTCTTAAACAATTCATGGCATT 119
Query 140 TGCAGCAAACCAACCG 155
||| ||||||||||||
Sbjct 120 TGCGGCAAACCAACCG 135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12265330756
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5