BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937723
Length=1424
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49310.1 | Symbols: | Major facilitator superfamily protein... 2326 0.0
> AT3G49310.1 | Symbols: | Major facilitator superfamily protein
| chr3:18284857-18288059 REVERSE LENGTH=1678
Length=1678
Score = 2326 bits (1259), Expect = 0.0
Identities = 1372/1427 (96%), Gaps = 5/1427 (0%)
Strand=Plus/Plus
Query 1 GAGAGAGT--GAGAGAAGCAACAATGGAGGTTTTCTACTACTTGGTGTTTGGAGTCATGG 58
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 46 GAGAGAGTGAGAGAGAAGCAACAATGGAGGTTTTCTACTACTTGGTGTTTGGAGTCATGG 105
Query 59 CTGCCGTAGTGGCGGCGTTGGAGCTGAGTAAGACAAACAAAGATCGGATCAACACTTCGT 118
||||||||||||| ||||||||||| || ||||| ||||| |||||||||||||||||||
Sbjct 106 CTGCCGTAGTGGCAGCGTTGGAGCTTAGCAAGACGAACAAGGATCGGATCAACACTTCGT 165
Query 119 CTTCCTTCAATTCTTTCAAGAACAATTACCTCCTCGTTTTCTCTATTATGATGGCTGGGG 178
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 CTTCCTTCAATTCATTCAAGAACAATTACCTCCTCGTTTTCTCTATTATGATGGCTGGGG 225
Query 179 ACTGGCTTCAGGGTCCTTATGTGTATTACCTTTACAGCACTTATGGTTTTGGGAAAGGAG 238
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 226 ATTGGCTTCAGGGTCCTTATGTGTATTACCTTTACAGCACTTATGGTTTTGGAAAAGGAG 285
Query 239 ATATTGGTCAGCTTTTCATTGCTGGTTTTGGTTCATCAATGTTGTTTGGAACCATTGTTG 298
||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 286 ATATTGGTCAGCTATTCATTGCTGGTTTTGGTTCGTCAATGTTGTTTGGAACTATTGTTG 345
Query 299 GATCTCTGGCTGACAAACAGGGTCGAAAGAGGGCATGTGTTACATACTGCATAGTTTACA 358
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 346 GATCTCTGGCTGACAAACAGGGTCGAAAGAGGGCATGTGTTACATACTGTATAGTTTACA 405
Query 359 TACTAAGTTGCATCACAAAGCACTCTCCACAGTACAAAGTTTTGATGGTTGGCCGTATCT 418
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 TACTAAGTTGCATCACCAAGCACTCTCCACAGTACAAAGTTTTGATGGTTGGCCGTATCT 465
Query 419 TAGGTGGTATTGCTACATCTCTCTTGTTTTCGGCATTCGAATCTTGGCTAATTGCAGAGC 478
| ||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||
Sbjct 466 TGGGTGGTATTGCTACATCTCTCTTGTTTTCTGCTTTCGAGTCCTGGCTAATTGCAGAGC 525
Query 479 ACAACAAGAGGAACTTTGAGCAACAGTGGCTGTCACTTACATTCTCTAAGGCTGT-TTTC 537
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 526 ACAATAAGAGGAACTTTGAGCAACAGTGGCTGTCACTTACATTCTCTAAGGCTGTATTT- 584
Query 538 CTTGGGAACGGACTGGTGGCTATTCTCTCGGGATTGTTCGGCAATCTTCTTGTTGACACT 597
||||| ||||| ||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 585 CTTGGAAACGGTCTGGTGGCTATCCTTTCGGGATTGTTTGGCAATCTTCTTGTTGACACT 644
Query 598 TTTTCATTTGGTCCTGTTGCTCCCTTTGACGCCGCTGCGTGCTTTCTTGCAATTGGAATG 657
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 TTTTCCTTTGGTCCTGTTGCTCCCTTTGACGCCGCTGCGTGCTTTCTTGCAATTGGAATG 704
Query 658 GCCATCATATTGGCAACATGGTCTGAGAATTTTGGAGATCCATCTGACAGCAAAGACTTG 717
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 GCGATCATATTGGGAACATGGTCTGAGAATTTTGGAGATCCATCTGACAGCAAAGACTTG 764
Query 718 CTGACTCAGTTCAAAGTTGCTGCCATAGCAATTGCTTCAGATGAAAAGATTGCATTGCTG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 CTGACTCAGTTCAAAGTTGCTGCCATAGCAATTGCTTCAGATGAAAAGATTGCATTGCTG 824
Query 778 GGCGCTATTCAGTCTCTATTTGAAGCCTCGATGTACACCTTTGTTTTCCTCTGGACACCA 837
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 825 GGCGCTATTCAGTCTCTATTCGAAGCCTCGATGTACACCTTTGTTTTCCTCTGGACACCA 884
Query 838 GCTCTTAGCCCAAACGATGAAGAAATTCCACATGGCTTCGTTTTTGCAACCTTCATGTTA 897
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 885 GCTCTTAGCCCAAACGATGAAGAAATTCCACATGGCTTCGTCTTTGCAACCTTCATGTTA 944
Query 898 GCCTCGATGTTGGGAAGCTCCCTTGCAGCTCGTCTCATGTCTCGCTCATCTCTCAGAGTC 957
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 GCCTCAATGTTGGGAAGCTCCCTTGCAGCTCGTCTCATGTCTCGCTCATCTCTCAGAGTC 1004
Query 958 GAAAACTACATGCAAATTGTCTTTCTAGTTTCTGCTGCTTCACTTCTTCTCCCCATTACA 1017
||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 1005 GAAAACTACATGCAAATTGTCTTTCTAGTCTCGGCTGCTTCACTTCTTCTTCCCATTACA 1064
Query 1018 ACAAGCGTCTTGGTGACCCCATCAAAGGTGAAAGACGAAGGCTTGTCGTTAACTAGCTCC 1077
||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 1065 ACAAGTGTCTTGGTGACACCGTCAAAGGTGAAAGACGAAGGATTGTCGTTAACTAGCTCC 1124
Query 1078 ATTCAGCTACTTGGTTTCTGTGTTTTTGAGGCTTGTGTAGGAATATTTTGGCCTTCGATA 1137
|||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1125 ATTCAGCTGCTTGGTTTCTGTGTTTTTGAGTCTTGTGTCGGAATATTTTGGCCTTCGATA 1184
Query 1138 ATGAAGATGAGATCACAGTATATCCCTGAAGAAGCACGAAGCACCATAATGAATTTCTTC 1197
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1185 ATGAAGATGAGGTCGCAGTATATACCTGAAGAAGCACGAAGCACCATAATGAATTTCTTC 1244
Query 1198 CGTGTGCCGCTCAACATCTTTGTCTGCATCGTCTTGTACAACGTGGACGCATTTCCCATC 1257
||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1245 CGTGTTCCACTCAACATCTTTGTCTGCATCGTCTTGTACAACGTGGACGCATTTCCGATC 1304
Query 1258 ACAATCATGTTTGGTATGTGCTCAATCTTCCTCTTCGTAGCCTCCATATTACAACGACGG 1317
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1305 ACAATCATGTTTGGTATGTGCTCAATCTTCCTCTTCGTAGCCTCCATATTACAACGGCGG 1364
Query 1318 CTTATGGTCATCTCCGAAAAGCCAAAGGCAGAAGAATGGAGTCCGATGAAGGAGCGAAAC 1377
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1365 CTTATGGTCATCTCTGAAAAGCCAAAGGCAGAAGATTGGAGTCCGATGAAGGAGCGAAAC 1424
Query 1378 TCGGAAGTTGATCCTCTTACCCTCTGATTGTGTTCCACTCCTATGCT 1424
||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1425 TCGGAAGTTGATCCTCTTACCCTCTGATTGTGT-CCACTCCTAAGCT 1470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70180361910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5