BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937725

Length=601
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G49330.1 | Symbols:  | Plant invertase/pectin methylesterase...   931    0.0  


> AT3G49330.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily protein | chr3:18291488-18292048 FORWARD 
LENGTH=561
Length=561

 Score =  931 bits (504),  Expect = 0.0
 Identities = 543/562 (97%), Gaps = 2/562 (0%)
 Strand=Plus/Plus

Query  21   ATGGCTTATGTTCACCTACTCATCTCTCTTCTCATCTTCATTACCTTCAAATCTTCAATC  80
            ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct  1    ATGGCTTATGTTCACCTACTCATGTCTCTTCTCATTTTCATTACCTTCAAATCTTCAATC  60

Query  81   TCCGTCGTCCCTGATCCACCAACACAAAACCTAATCAACAGAATATGCAAACAAACCATC  140
            || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct  61   TCTGTCGTCCCTGATCCACCAACACAAAACCTAATCAACAGAATCTGCAAACAAACCATT  120

Query  141  GATTTCAAGTTCTGCAATCAAACAATCACATCTCAGCTGA-TCAGACGACAAACCTCAAT  199
            ||||||||||||||||| |||||||||||||||||||| | ||||||||||||| |||||
Sbjct  121  GATTTCAAGTTCTGCAACCAAACAATCACATCTCAGCT-AGTCAGACGACAAACTTCAAT  179

Query  200  CAAAACAATCGCGAAACTAACGGCAGCTAAAGCATGGATCAACGCGATACAAACGCTTGA  259
            ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct  180  CAAAACAATCGCGAAACTAACCGCAGCTAAAGCTTGGATCAACGCGATACAAACGCTCGA  239

Query  260  TAACATCGAAGATTCTCTTCTTCCGAAAGCGAAAGATAAACGAGACAAAGCAGAGTTTGA  319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  TAACATCGAAGATTCTCTTCTTCCGAAAGCGAAAGATAAACGAGACAAAGCAGAGTTTGA  299

Query  320  TGCTTGTAGGAAAGCTTATAAGTTGGTGGATGCTCATTTAGACAACGCGTTGAAGTATTT  379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  TGCTTGTAGGAAAGCTTATAAGTTGGTGGATGCTCATTTAGACAACGCGTTGAAGTATTT  359

Query  380  GTATTTACGAGATTATAGATTCATGAGAGCGTATCAAGCTCTTGCACTTGTGAATATTTC  439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  360  GTATTTACGAGATTATAGATTCATGAGAGCGTATCAAGCTCTTGCACTTGTGAATATTTC  419

Query  440  CATGTGTAGGACGAGtttttttCATCCGACGCCGATGGTTTATGCGAATTGGAACATGAA  499
            |||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct  420  CATGTGCAGGACTAGTTTTTTCCATCCGACGCCTATGGTTTATGCGAATTGGAACATGAA  479

Query  500  GATGTTAACGGATATCGCGATTTATGCTGGCAAGATTCTTTCTCCTCCTCCTCCTCTTAG  559
            |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  480  GATGTTGACGGATATAGCGATTTATGCTGGCAAGATTCTTTCTCCTCCTCCTCCTCTTAC  539

Query  560  GAAGAAGAGCAAGTCGCCATGA  581
            ||||||||||||||||||||||
Sbjct  540  GAAGAAGAGCAAGTCGCCATGA  561



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28934868672


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5