BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937726
Length=955
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49340.1 | Symbols: | Cysteine proteinases superfamily prot... 712 0.0
AT1G29090.1 | Symbols: | Cysteine proteinases superfamily prot... 82.4 7e-15
> AT3G49340.1 | Symbols: | Cysteine proteinases superfamily protein
| chr3:18293347-18294577 REVERSE LENGTH=1026
Length=1026
Score = 712 bits (385), Expect = 0.0
Identities = 614/719 (85%), Gaps = 38/719 (5%)
Strand=Plus/Plus
Query 23 GGAGCCACATCTCGTgggggggCTCTTTGAAGCTTCTGCTATTGAAAAACATGAGCAATG 82
|||| |||||||||| || |||||||||||||||||||| | || ||||||||||||||
Sbjct 55 GGAGTCACATCTCGT-GGCGGGCTCTTTGAAGCTTCTGCCGTAGAGAAACATGAGCAATG 113
Query 83 GATGTCTCGATTCAATCGCGTTTACTCGGACGATTCTGAGAAAACGAGTAGGTTCGAGAT 142
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 114 GATGTCTCGATTCAATCGCGTGTACTCAGACGATTCTGAGAAAACGAGTAGGTTCGAGAT 173
Query 143 CTTTAAGAAGAACTTAAAGTTCGTTGAGAGCTTCAACATGAATACGAACAATACGTACAA 202
||||| ||| ||||||||||| || |||||| |||| |||||||||||||| |||||||
Sbjct 174 CTTTACGAATAACTTAAAGTTTGTCGAGAGCATCAATATGAATACGAACAAAACGTACAC 233
Query 203 GTTGGATGTCAACAAGTTCTCTGATCTTACCGACGAGGAATTTCAGGCGAGGTACATGGG 262
||||||||| ||| ||||||||||||| ||||||||||||||| |||||||||||| |||
Sbjct 234 GTTGGATGTTAACGAGTTCTCTGATCTCACCGACGAGGAATTTAAGGCGAGGTACACGGG 293
Query 263 GC---TGGTGCCGGAAGGTATGACC-G---------GA--GATTCCCA-GAAAACGGTGT 306
|| ||||||| |||||||||||| | | ||||| || | ||||||| |
Sbjct 294 GCTGGTGGTGCCCGAAGGTATGACCAGAATTTCAACAACTGATTCTCATG-AAACGGTAT 352
Query 307 CGTTTAGATATGAAAATGTCAGTGAAACCGGTGAGAGCATGGATTGGAGACTGGAAGGGG 366
|||||||||||||||| || ||||||||||||||||||||||||||| || ||||||||
Sbjct 353 CGTTTAGATATGAAAACGTTGGTGAAACCGGTGAGAGCATGGATTGGATACAGGAAGGGG 412
Query 367 CCGTTACACCCGTTAAGGACCAAGGCCAATGTGGATGTTGTTGGGCTTT-TGCGGCGGTG 425
| |||||| |||||||| ||||| |||||||||||||| |||||||| | ||||||||
Sbjct 413 CTGTTACATCCGTTAAGCACCAACAACAATGTGGATGTTGCTGGGCTTTCT-CGGCGGTG 471
Query 426 GCGGCTGTGGAAGGCGTAACAAAGATTTCGAGTGGAGAGCTTGTATCGCTGTCTGAGCAG 485
|| || ||||||||| | || |||||| ||| ||||||||||||||||||||||||||||
Sbjct 472 GCAGCAGTGGAAGGCATGACGAAGATTGCGAATGGAGAGCTTGTATCGCTGTCTGAGCAG 531
Query 486 CAACTAGT-GGATTGCAGTACAGCCAACAACAACATGGGATGTGACGGAGGG-TCAGCTT 543
||||| || |||||| ||||| | || ||||| ||| ||||| ||||||| | | |
Sbjct 532 CAACT-GTTGGATTGTAGTACGG--AA-AACAA--TGG-ATGTGGCGGAGGGATAA--TG 582
Query 544 TG-ACAGCTTACGACTACATAAAAGAAAACCAAGGAATCACCAGGGAGGAAAACTATCCC 602
|| | ||||| ||||||||| |||||||||||||| ||||||| ||||| ||||||||
Sbjct 583 TGGAAAGCTTTCGACTACATTAAAGAAAACCAAGGTATCACCACAGAGGATAACTATCCT 642
Query 603 TACCA-GGCAGTACAACAAACCTGT-ACGTCAACTGATCCAGCTGCTGCTACCATCAGCG 660
||||| || || ||||||||| ||| | ||||| | ||| ||||||||||||||||||||
Sbjct 643 TACCAAGG-AGCACAACAAACATGTGA-GTCAAATCATCTAGCTGCTGCTACCATCAGCG 700
Query 661 GATACGAGGCGGTTCCA-AAAGATGATGAGGAAGCATTGCTAAAAGCGGTGTCTCAACA 718
||||||| ||||||| ||| |||| |||||||||||||||||||| |||||||||||
Sbjct 701 GATACGAAACGGTTCCCCAAA-ATGACGAGGAAGCATTGCTAAAAGCAGTGTCTCAACA 758
Score = 224 bits (121), Expect = 1e-57
Identities = 160/179 (89%), Gaps = 2/179 (1%)
Strand=Plus/Plus
Query 758 TCATGCTGTTACGATTGTTGGTTATGGTACGAGTGAAGAAGGGATTAAGTATTGGTTGCT 817
|||||| ||||| || ||||||||||| ||| |||||||| || |||||||||||| |
Sbjct 849 TCATGCAGTTACTATAGTTGGTTATGGGGTGAGCGAAGAAGGCATCAAGTATTGGTTGTT 908
Query 818 GAAGAACTCATGGGGAGAATCTTGGGGAGAGAATGGTTACATGAGAATCATGAGAGACGT 877
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 909 GAAGAACTCATGGGGAGAATCTTGGGGAGAAAATGGTTATATGAGAATCATGAGAGACGT 968
Query 878 GGATGAACCTCAAGGAATGTGTGGTTTGGCCCA-CCGTGCTTACTATCCAGTTGCTTGA 935
||| |||||| |||||||||||||||||| | || ||||||||||||||||||||||
Sbjct 969 AGATTCACCTCAGGGAATGTGTGGTTTGGCC-AGCCTTGCTTACTATCCAGTTGCTTGA 1026
> AT1G29090.1 | Symbols: | Cysteine proteinases superfamily protein
| chr1:10162983-10164452 REVERSE LENGTH=1255
Length=1255
Score = 82.4 bits (44), Expect = 7e-15
Identities = 95/119 (80%), Gaps = 6/119 (5%)
Strand=Plus/Plus
Query 337 GTGAGAGCATGGATTGGAGACT-GGAAGGGGCCGTTACACCCGTTAAGGACCAAGGCCAA 395
|||||| || ||||||||| | ||||| || || ||||| ||||| |||||||||||
Sbjct 486 GTGAGACCAAAGATTGGAGA-TACGAAGGAGCTGTAACACCTGTTAAATACCAAGGCCAA 544
Query 396 TGTGGATGTTGTTGGGCTTT-TGCG-GCGGTGGCGGCTGTGGAAGGCGTAACAAAGATT 452
||||||||||||||||| || | | ||| | || || |||||||| | |||||||||
Sbjct 545 TGTGGATGTTGTTGGGCATTCT-CAAGCG-TCGCAGCGGTGGAAGGTTTGACAAAGATT 601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46717756710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5