BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937728 Length=1660 Score E Sequences producing significant alignments: (Bits) Value AT3G49350.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 2516 0.0 > AT3G49350.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr3:18297406-18300189 REVERSE LENGTH=2220 Length=2220 Score = 2516 bits (1362), Expect = 0.0 Identities = 1557/1651 (94%), Gaps = 13/1651 (1%) Strand=Plus/Plus Query 20 TAGATGAAAGCTTTGAGAAGGATTCAAACGACGTCTTCGTCTTCTAATCCTTCATCGCCA 79 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 341 TAGATGAAAGCTTTGAGACGGATTCAAACGACGTCTTCGTCTTCTAATCCTTCATCGCCA 400 Query 80 TTATCATCTCCT-C--CTTCTTCATCATC-T--TCGTGGATCCAAATACGTTCTGCTCTC 133 ||||| |||||| | ||||||||||||| | ||||||||||||||||||||||||||| Sbjct 401 TTATCGTCTCCTCCTTCTTCTTCATCATCATCCTCGTGGATCCAAATACGTTCTGCTCTC 460 Query 134 TTCGTTGTTGCTTCTTCATCTCCTGCGTCTTGTTCTTCTGATCGGCCTCGTCTTAAATCA 193 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 461 TTCGTTGTTGCTTCTTCATCTCCTGCTTCTTG---TTCTGATCGGCCTCGTCTTAAATCA 517 Query 194 CCATGGTCTCGGAGGAGAAGGAAAAGGCCTCTCAGACCTCAGCAATGGAAGAGATTTTTT 253 |||||||||||||||| |||||||||||| || |||||||||||||||||||| |||||| Sbjct 518 CCATGGTCTCGGAGGAAAAGGAAAAGGCCACTTAGACCTCAGCAATGGAAGAGGTTTTTT 577 Query 254 ACACCTGACGGTAGACTGCGGAATGGAGGAGTGGATTTGTTGAAGAAAGTTCGGAGTAGA 313 || |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 578 ACTCCTGACGGTAGATTGCGGAATGGAGGAGTGGATTTGTTGAAGAAAGTTCGAAGTAGA 637 Query 314 GGTATTGAACCGAGCATTCGGCTGGAGGTGTGGCCATTCCTTCTTGGAGTGTATGGTTTT 373 |||||||| || ||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 638 GGTATTGAGCCAAGCATTCGGCTAGAGGTGTGGCCATTCCTTCTTGGATTGTATGGTTTT 697 Query 374 AATAGTTCTAAAGAAGAGAGAGTCAATATAAGAAACCGGAGAAGAAAGGAGTATGAGAGA 433 ||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct 698 AATAGTTCTAAAGAAGAGAGAGTTACTATAAGAAACCGGAGGAGAAAGGAGTATGAGAGA 757 Query 434 CTACGTAGGCAGTGCAAACGGCTTCAAAAACACAATAACGGGACTCGTAAGTTAAACATG 493 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 758 CTACGTAGGCAGTGCAAACGGCTTCAAAAACACAATAACGGGACTCGTAAGTTATACAAC 817 Query 494 GGCAGTGAAACTATGGAAGATGAGTATGATTGGCCTCAAGTTCAAGACACTGACAGTTCA 553 |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 818 GGCAGTGAAACTATCCAAGATGAGTATGATTGGCCTCGAGTTCAAGACACTGACAGTTCA 877 Query 554 TGTTCTGATGAAGTTGTCAGTGCCCGTGAGTCTCTCTCGAGTGATGAAGACATCACTGAA 613 ||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||| Sbjct 878 TGTTCTGATGAAGTTGTTAGTGCCCGTGAGTCTCTCTCTAGTGACGAAGACATTACTGAA 937 Query 614 GATATTGGGTACATGAGTGAAGTTTCATGTACAGTTGAGAGGGATGACGGCAGTAGTTCA 673 ||||||||||| |||||||| |||||||||||||||||||| || ||||| ||||||||| Sbjct 938 GATATTGGGTATATGAGTGAGGTTTCATGTACAGTTGAGAGAGACGACGGTAGTAGTTCA 997 Query 674 AGACGAATCACCAATGCTACTATCTCTACACTAAATTCCGAGTCATCAGATTCAGATTCT 733 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 998 AGACGAATCACCAATGCTACTATCTCTACACTTAATTCCGAGTCATCAGATTCAGATTCT 1057 Query 734 TCAAATGGGAGTGAAGTGGTACAGGTCTTTCAATCTTCTGCTACTCCGGATGTGAATAGT 793 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1058 TCAGATGAGAGTGAAGTGGTACAGGTCTTTCAATCTTCTGCTACTCCGGATGTGAATAGT 1117 Query 794 GCATATCCAGCCAGCTCATCTATCCCCCGGACAGAAGAGGATTTTGTGACGTGGCAGCGT 853 | ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1118 ACTTATCCAGCCAGTTCATCTATTCCCCGGACAGAAGAGGATTTTGTGACGTGGCAGCGT 1177 Query 854 ATTATTCGTCTAGATGCTGTGCGTGCTAATTCAGAGTGGACCCCCTATTCTCCATCCCAG 913 ||||| |||||||| || ||||||||| | |||||||||||| ||||||||||||||||| Sbjct 1178 ATTATCCGTCTAGACGCCGTGCGTGCTGACTCAGAGTGGACCTCCTATTCTCCATCCCAG 1237 Query 914 GCAGTTATATCCGAGGACAGAGCATGTCGTGCCGCTGAAGCGGTTGGGTTAAAAGATTAC 973 ||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||| Sbjct 1238 GCAGTTATATCGGAGGATAGAGCATGTCGTGCCGCTGAGGCGGTTGGGTTGAAAGATTAC 1297 Query 974 AATCACTTGGAACCATACAAAATATTTCAAGCTGCACGGCTAGTTGCTGTTCTTGAAGCG 1033 |||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1298 AATCACCTGGAACCGTACAAAATCTTTCAAGCTGCACGGCTAGTTGCTGTTCTTGAAGCT 1357 Query 1034 TATGCTTTATATGACCCTGACATCGGGTATTGCCAAGGAATGAGCGATCTTCTCTCTCCT 1093 |||||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||| Sbjct 1358 TATGCTTTGTATGACCCTGACATTGGATATTGCCAAGGAATGAGTGATCTTCTCTCTCCT 1417 Query 1094 ATACTCTCTGTAATCCCTGATGACCATGAAGTCTTTTGGTGCTTCGTCGGGTTCATGAAG 1153 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1418 ATACTCTCTGTAATCCCTGATGACCATGAAGTCTTTTGGTGTTTCGTCGGGTTCATGAAG 1477 Query 1154 AAAGCGCGTCATAATTTCAGACTAGACGAGGTTGGAATCAGAAGACAACTCAACATAGTC 1213 ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1478 AAAGCTCGTCACAATTTCAGACTTGACGAGGTTGGAATCAGAAGACAACTCAACATAGTC 1537 Query 1214 TCAAAGATAATCAAATCTAAAGACTCTCAGCTTTATAGGCACCTGGAGAAACTCCAAGCC 1273 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1538 TCAAAGATAATCAAATCTAAAGACTCTCAGCTTTATAGGCACCTTGAGAAACTCCAAGCT 1597 Query 1274 GAAGACTGTTTCTTTGTATATAGAATGGTGGTTGTGATGTTCAGACGGGAGCTGACACTC 1333 |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| Sbjct 1598 GAAGACTGTTTCTTTGTATACAGAATGGTTGTTGTGATGTTCAGACGAGAGCTGACACTT 1657 Query 1334 GATCAGACGTTATGTCTATGGGAAGTAATGTGGGCAGATCAAGCTGCAATCAGAGCCGGG 1393 |||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1658 GATCAGACATTGTGTCTATGGGAAGTAATGTGGGCAGATCAAGCCGCAATCAGAGCCGGG 1717 Query 1394 ATGGGAAAATCCGCATGGAGTAGGATAAGGCAACGTGCACCTCCCACGGATGATTTGGTG 1453 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1718 ATGGGAAAATCCGCGTGGAGTAGGATAAGGCAACGTGCACCTCCCACTGATGATTTGGTG 1777 Query 1454 CTCTATGCAATAGCGGCCTCAGTGTTGCAAAGAAGGAAACTTATAATAGAAAAGTATAAC 1513 |||||||||||||||||||| ||||||||||||||||||| ||| ||||||| ||||||| Sbjct 1778 CTCTATGCAATAGCGGCCTCGGTGTTGCAAAGAAGGAAACGTATTATAGAAAGGTATAAC 1837 Query 1514 AGCATGGATGAGATTTTAAGGGAGTGTCAAAGTATGGCAGGGCAATTAGATGTGTGGAAG 1573 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1838 AGCATGGATGAGATTTTAAGGGAGTGCCAAAGTATGGCAGGGCAGTTAGATGTGTGGAAG 1897 Query 1574 CTCCTGGATGATGCACATGACCTCGTCGTTACTCTACACACCAAGATTGAACATTCATTC 1633 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1898 CTCCTTGATGATGCACATGACCTCGTTGTTACTCTACACACCAAGATTGAACATTCATTC 1957 Query 1634 TCATAAA-ATTT-TCTCT-T-TTCTTCCGCG 1660 ||||||| |||| ||||| | || ||||||| Sbjct 1958 TCATAAATATTTATCTCTATATTATTCCGCG 1988 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82027690530 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5