BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937728
Length=1660
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49350.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 2516 0.0
> AT3G49350.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily
protein | chr3:18297406-18300189 REVERSE LENGTH=2220
Length=2220
Score = 2516 bits (1362), Expect = 0.0
Identities = 1557/1651 (94%), Gaps = 13/1651 (1%)
Strand=Plus/Plus
Query 20 TAGATGAAAGCTTTGAGAAGGATTCAAACGACGTCTTCGTCTTCTAATCCTTCATCGCCA 79
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 341 TAGATGAAAGCTTTGAGACGGATTCAAACGACGTCTTCGTCTTCTAATCCTTCATCGCCA 400
Query 80 TTATCATCTCCT-C--CTTCTTCATCATC-T--TCGTGGATCCAAATACGTTCTGCTCTC 133
||||| |||||| | ||||||||||||| | |||||||||||||||||||||||||||
Sbjct 401 TTATCGTCTCCTCCTTCTTCTTCATCATCATCCTCGTGGATCCAAATACGTTCTGCTCTC 460
Query 134 TTCGTTGTTGCTTCTTCATCTCCTGCGTCTTGTTCTTCTGATCGGCCTCGTCTTAAATCA 193
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 461 TTCGTTGTTGCTTCTTCATCTCCTGCTTCTTG---TTCTGATCGGCCTCGTCTTAAATCA 517
Query 194 CCATGGTCTCGGAGGAGAAGGAAAAGGCCTCTCAGACCTCAGCAATGGAAGAGATTTTTT 253
|||||||||||||||| |||||||||||| || |||||||||||||||||||| ||||||
Sbjct 518 CCATGGTCTCGGAGGAAAAGGAAAAGGCCACTTAGACCTCAGCAATGGAAGAGGTTTTTT 577
Query 254 ACACCTGACGGTAGACTGCGGAATGGAGGAGTGGATTTGTTGAAGAAAGTTCGGAGTAGA 313
|| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 578 ACTCCTGACGGTAGATTGCGGAATGGAGGAGTGGATTTGTTGAAGAAAGTTCGAAGTAGA 637
Query 314 GGTATTGAACCGAGCATTCGGCTGGAGGTGTGGCCATTCCTTCTTGGAGTGTATGGTTTT 373
|||||||| || ||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 638 GGTATTGAGCCAAGCATTCGGCTAGAGGTGTGGCCATTCCTTCTTGGATTGTATGGTTTT 697
Query 374 AATAGTTCTAAAGAAGAGAGAGTCAATATAAGAAACCGGAGAAGAAAGGAGTATGAGAGA 433
||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||
Sbjct 698 AATAGTTCTAAAGAAGAGAGAGTTACTATAAGAAACCGGAGGAGAAAGGAGTATGAGAGA 757
Query 434 CTACGTAGGCAGTGCAAACGGCTTCAAAAACACAATAACGGGACTCGTAAGTTAAACATG 493
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 758 CTACGTAGGCAGTGCAAACGGCTTCAAAAACACAATAACGGGACTCGTAAGTTATACAAC 817
Query 494 GGCAGTGAAACTATGGAAGATGAGTATGATTGGCCTCAAGTTCAAGACACTGACAGTTCA 553
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 818 GGCAGTGAAACTATCCAAGATGAGTATGATTGGCCTCGAGTTCAAGACACTGACAGTTCA 877
Query 554 TGTTCTGATGAAGTTGTCAGTGCCCGTGAGTCTCTCTCGAGTGATGAAGACATCACTGAA 613
||||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 878 TGTTCTGATGAAGTTGTTAGTGCCCGTGAGTCTCTCTCTAGTGACGAAGACATTACTGAA 937
Query 614 GATATTGGGTACATGAGTGAAGTTTCATGTACAGTTGAGAGGGATGACGGCAGTAGTTCA 673
||||||||||| |||||||| |||||||||||||||||||| || ||||| |||||||||
Sbjct 938 GATATTGGGTATATGAGTGAGGTTTCATGTACAGTTGAGAGAGACGACGGTAGTAGTTCA 997
Query 674 AGACGAATCACCAATGCTACTATCTCTACACTAAATTCCGAGTCATCAGATTCAGATTCT 733
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 998 AGACGAATCACCAATGCTACTATCTCTACACTTAATTCCGAGTCATCAGATTCAGATTCT 1057
Query 734 TCAAATGGGAGTGAAGTGGTACAGGTCTTTCAATCTTCTGCTACTCCGGATGTGAATAGT 793
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 TCAGATGAGAGTGAAGTGGTACAGGTCTTTCAATCTTCTGCTACTCCGGATGTGAATAGT 1117
Query 794 GCATATCCAGCCAGCTCATCTATCCCCCGGACAGAAGAGGATTTTGTGACGTGGCAGCGT 853
| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1118 ACTTATCCAGCCAGTTCATCTATTCCCCGGACAGAAGAGGATTTTGTGACGTGGCAGCGT 1177
Query 854 ATTATTCGTCTAGATGCTGTGCGTGCTAATTCAGAGTGGACCCCCTATTCTCCATCCCAG 913
||||| |||||||| || ||||||||| | |||||||||||| |||||||||||||||||
Sbjct 1178 ATTATCCGTCTAGACGCCGTGCGTGCTGACTCAGAGTGGACCTCCTATTCTCCATCCCAG 1237
Query 914 GCAGTTATATCCGAGGACAGAGCATGTCGTGCCGCTGAAGCGGTTGGGTTAAAAGATTAC 973
||||||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1238 GCAGTTATATCGGAGGATAGAGCATGTCGTGCCGCTGAGGCGGTTGGGTTGAAAGATTAC 1297
Query 974 AATCACTTGGAACCATACAAAATATTTCAAGCTGCACGGCTAGTTGCTGTTCTTGAAGCG 1033
|||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1298 AATCACCTGGAACCGTACAAAATCTTTCAAGCTGCACGGCTAGTTGCTGTTCTTGAAGCT 1357
Query 1034 TATGCTTTATATGACCCTGACATCGGGTATTGCCAAGGAATGAGCGATCTTCTCTCTCCT 1093
|||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 1358 TATGCTTTGTATGACCCTGACATTGGATATTGCCAAGGAATGAGTGATCTTCTCTCTCCT 1417
Query 1094 ATACTCTCTGTAATCCCTGATGACCATGAAGTCTTTTGGTGCTTCGTCGGGTTCATGAAG 1153
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1418 ATACTCTCTGTAATCCCTGATGACCATGAAGTCTTTTGGTGTTTCGTCGGGTTCATGAAG 1477
Query 1154 AAAGCGCGTCATAATTTCAGACTAGACGAGGTTGGAATCAGAAGACAACTCAACATAGTC 1213
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1478 AAAGCTCGTCACAATTTCAGACTTGACGAGGTTGGAATCAGAAGACAACTCAACATAGTC 1537
Query 1214 TCAAAGATAATCAAATCTAAAGACTCTCAGCTTTATAGGCACCTGGAGAAACTCCAAGCC 1273
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1538 TCAAAGATAATCAAATCTAAAGACTCTCAGCTTTATAGGCACCTTGAGAAACTCCAAGCT 1597
Query 1274 GAAGACTGTTTCTTTGTATATAGAATGGTGGTTGTGATGTTCAGACGGGAGCTGACACTC 1333
|||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 1598 GAAGACTGTTTCTTTGTATACAGAATGGTTGTTGTGATGTTCAGACGAGAGCTGACACTT 1657
Query 1334 GATCAGACGTTATGTCTATGGGAAGTAATGTGGGCAGATCAAGCTGCAATCAGAGCCGGG 1393
|||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1658 GATCAGACATTGTGTCTATGGGAAGTAATGTGGGCAGATCAAGCCGCAATCAGAGCCGGG 1717
Query 1394 ATGGGAAAATCCGCATGGAGTAGGATAAGGCAACGTGCACCTCCCACGGATGATTTGGTG 1453
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1718 ATGGGAAAATCCGCGTGGAGTAGGATAAGGCAACGTGCACCTCCCACTGATGATTTGGTG 1777
Query 1454 CTCTATGCAATAGCGGCCTCAGTGTTGCAAAGAAGGAAACTTATAATAGAAAAGTATAAC 1513
|||||||||||||||||||| ||||||||||||||||||| ||| ||||||| |||||||
Sbjct 1778 CTCTATGCAATAGCGGCCTCGGTGTTGCAAAGAAGGAAACGTATTATAGAAAGGTATAAC 1837
Query 1514 AGCATGGATGAGATTTTAAGGGAGTGTCAAAGTATGGCAGGGCAATTAGATGTGTGGAAG 1573
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1838 AGCATGGATGAGATTTTAAGGGAGTGCCAAAGTATGGCAGGGCAGTTAGATGTGTGGAAG 1897
Query 1574 CTCCTGGATGATGCACATGACCTCGTCGTTACTCTACACACCAAGATTGAACATTCATTC 1633
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1898 CTCCTTGATGATGCACATGACCTCGTTGTTACTCTACACACCAAGATTGAACATTCATTC 1957
Query 1634 TCATAAA-ATTT-TCTCT-T-TTCTTCCGCG 1660
||||||| |||| ||||| | || |||||||
Sbjct 1958 TCATAAATATTTATCTCTATATTATTCCGCG 1988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82027690530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5