BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937729
Length=821
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49360.1 | Symbols: PGL2 | 6-phosphogluconolactonase 2 | chr... 1295 0.0
> AT3G49360.1 | Symbols: PGL2 | 6-phosphogluconolactonase 2 | chr3:18303046-18304416
REVERSE LENGTH=1056
Length=1056
Score = 1295 bits (701), Expect = 0.0
Identities = 779/818 (95%), Gaps = 0/818 (0%)
Strand=Plus/Plus
Query 4 TCATCATCATCTAATTAGATGGCGCCGGTGAAGAGGAGGGTGTTCAAGACAAAGAATGAA 63
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 116 TCATCTTCATCGAATTAGATGGCACCGGTGAAGAGGAGGGTGTTCAAGACAAATAATGAA 175
Query 64 ATGGCAGTGGAGCTAGCCAAATACACGGCTGATCTTTCCTCCAAATTCTGCAAAGAAAGA 123
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 176 ATGGCAGTGGAGCTGGCCAAATACACGGCTGATCTTTCCTCCAAATTTTGCAAAGAAAGA 235
Query 124 GGAATTTTCACCGTCGTTCTCTCCGGCGGCGACCTCATCGCCTGGCTCTGGAAATTGTTA 183
||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 236 GGAGTTTTCACCGTTGTTCTCTCCGGCGGCGACCTCATAGCCTGGCTCTGGAAATTGTTA 295
Query 184 GAAGCTCCTTATATTGATTCAATTGAGTGGTCTAAGTGGCACATCTTCTGGGTCGACGAG 243
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 296 GAAGCTCCTTATATTGATTCAATTGAGTGGTCTAAGTGGCACATCTTTTGGGTCGACGAG 355
Query 244 AGGGTTTGTGCTTGGGATAACGTGGATAGCAACTATAAACTCGCTTACGACGGTTTTCTC 303
|||||||||||||||||| | | ||||||||||||||||||||||||||| |||||||||
Sbjct 356 AGGGTTTGTGCTTGGGATCATGCGGATAGCAACTATAAACTCGCTTACGATGGTTTTCTC 415
Query 304 TCCAAGGTTCCAATTCCAGCTGAAAACATCTACGCTATCGACAACGGACTCGGGGCAGAA 363
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 416 TCCAAGGTTCCAGTTCCAGCTGAAAACATCTACGCTATCGATAACGGACTCGGGGCAGAA 475
Query 364 GGCAACGCTGAGCTAGCAGCTAAAAGGTACGAGGAGTGCCTCAAACAAAAGGTGAACCAG 423
|||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 476 GGCAACGCCGAGCTAGCAGCTGAAAGGTACGAGGAGTGCCTCAAACAAAAAGTGAACCAA 535
Query 424 AACATAATCCGAACGTACAAATCTTCTGGTTTTCCACAATTCGATCTTCAGCTTCTAGGA 483
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 536 AACATAATCCGAACGTACAAATCTTCTGGTTTTCCACAGTTCGATCTTCAGCTTCTAGGT 595
Query 484 ATGGGACCAGACGGTCACATGGCTTCTCTATTCCCGGGACATGATCAGATCAACGAGAAA 543
|||||||| |||||||||||||| ||||||||||| ||||||| ||||||||| |||||
Sbjct 596 ATGGGACCGGACGGTCACATGGCGTCTCTATTCCCTGGACATGCTCAGATCAATGAGAAG 655
Query 544 GTGAAATGGGTCACATCTATAACCGATTCACCTAAACCACCACCAAAAAGGATAACTTTT 603
||||||||||||||||||||||||||||||||||| ||||| |||||||||| || ||
Sbjct 656 GTGAAATGGGTCACATCTATAACCGATTCACCTAAGCCACCGTCAAAAAGGATCACATTG 715
Query 604 ACTTTACCGGTTATCAATTGTGCTTCCTACAATGTTATGGCCGTATGTGATAAAGAGCAG 663
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 716 ACTTTACCGGTTATCAATTGTGCTTCCTATAATGTTATGGCCGTATGTGATAAAGAGCAG 775
Query 664 GCTGATTCGGTTGCGGCTGCTCTTACTCATACCAAAGACTTACCAGCCGGTAGACTAACC 723
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 776 GCTGATTCGGTTGCGGCTGCTCTTAATCATACCAAAGACTTACCAGCTGGTAGACTAACC 835
Query 724 GCGGATGTTGAAGTGGTTTGGTTCCTTGATCAAGCTGCTGCGTCTAAGCTCCCTCATGGC 783
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 836 GCGGATGTTGAAGTGGTTTGGTTCCTTGACCAAGCTGCTGCGTCTAAACTCCCTCATGGC 895
Query 784 TGGTGCTCCATCCTTTGATTTAAACGTTTATGTTTTTG 821
||||||||||||||||||||||||||||||||||||||
Sbjct 896 TGGTGCTCCATCCTTTGATTTAAACGTTTATGTTTTTG 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39986381012
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5