BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937735
Length=946
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49430.1 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich p... 1500 0.0
> AT3G49430.1 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich
protein 34A | chr3:18331546-18335041 FORWARD LENGTH=1308
Length=1308
Score = 1500 bits (812), Expect = 0.0
Identities = 906/949 (95%), Gaps = 15/949 (2%)
Strand=Plus/Plus
Query 3 TTTTAACCTTCGGAAACAATGAGTGGGCGTTTTTCTCGGTCAATCTATGTTGGTAACTTG 62
|||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 176 TTTTAACCTTTGCAAACAATGAGTGGGCGATTTTCTCGGTCAATCTATGTTGGTAACTTG 235
Query 63 CCTGGTGACATTAGAGAGCATGAGATTGAAGATCTCTTTTACAAGTATGGGCGTATTGTC 122
|| ||||||||||| || ||||||||||||||| |||||||||||||||| || ||||||
Sbjct 236 CCCGGTGACATTAGGGAACATGAGATTGAAGATATCTTTTACAAGTATGGCCGCATTGTC 295
Query 123 GATATTGAATTGAAGGTTCCACCTCGGCCTCCATGTTATTGCTTTGTTGAGTTTGAGCAT 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 GATATTGAATTGAAGGTTCCACCTCGGCCTCCATGTTATTGCTTTGTTGAGTTTGAGCAT 355
Query 183 TCTCGGGATGCCGAAGATGCCATCAAGGGCCGTGATGGCTATAACTTCGATGGCTGTCGC 242
||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 356 TCTCGGGATGCTGAAGATGCCATCAAGGGCCGTGATGGCTATAATTTGGATGGCTGTCGC 415
Query 243 TTGAGGGTTGAGCTTGCCCATGGTGGTCGAGGACAGTCTTCAAGTGATCGTCgtggtggc 302
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TTGAGGGTTGAGCTTGCACATGGTGGTCGAGGACAGTCTTCAAGTGATCGTCGTGGTGGC 475
Query 303 tacggtggtggtggcggcggcggctatggtggtggaggtggtggtggGGGATCAGCTCGG 362
|||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 476 TACGGTGGTGGT---GGCAGCGGCTATGGTGGTGGAGGTGGTGGTGGTGGATCAGCTCGG 532
Query 363 TTTGGCGTCTCACGACACTCTGAATTCCGAGTTATTGTGCGTGGGCTCCCATCATCTGCT 422
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 533 TTTGGCGTCTCACGACACTCTGAATTCCGAGTTATTGTACGTGGGCTCCCATCATCTGCT 592
Query 423 TCATGGCAAGATTTGAAGGATCATATGCGGAAAGCTGGTGATGTGTGCTTTGCTGAGGTC 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TCATGGCAAGATTTGAAGGATCATATGCGGAAAGCTGGTGATGTGTGCTTTGCTGAGGTG 652
Query 483 ACTCGAGACAGTGATGGAACTTATGGTGTTGTCGACTACACCAATTATGATGACATGAAG 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 ACTCGAGACAGTGATGGAACTTATGGTGTTGTCGACTACACCAATTATGATGACATGAAG 712
Query 543 TATGCTATAAGGAAACTTGATGACACAGAGTTCAGAAACCCCTGGGCTAGAGGTTTTATC 602
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TATGCAATAAGGAAACTTGATGACACAGAGTTCAGAAACCCCTGGGCTAGAGGTTTTATC 772
Query 603 CGGGTTAAGAAATATGAAAGCTCCCGATCaagaagcagaagcccaagcagaagcagaagc 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 CGGGTTAAGAAATATGAAAGCTCCCGATCAAGAAGCAGAAGCCCAAGCAGAAGCAGAAGC 832
Query 663 agaagcagaagcagaagTCGAAGTCGTAGCCGAGGCCGTGGTCGCAGCCGTAGCCGCAGC 722
||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 833 AGAAGCAGAAG------TCGAAGTCGTAGCCGAGGCCGTGGTCGCAGCCATAGCCGCAGT 886
Query 723 CGCAGCCTTAGCCGAAGCAAGAGCCCAAGGAAGGATCTGAGTAAATCACCAAAACGATCC 782
|||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 887 CGCAGCCTTAGCAGGAGCAAGAGCCCAAGGAAGGATCTGAGTAAATCACCAAGGCGATCC 946
Query 783 CTTTCCAGATCGATTTCAAAATCTAGATCGCCATCTCCCGACAAGAAGAAGAGTCCCCCC 842
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 947 CTTTCCAGATCGATTTCAAAATCTAGATCGCCATCGCCCGACAAGAAGAAGAGTCCCCCC 1006
Query 843 AGGGCAATGTCGAGATCAAGGTCCAGGTCCAGGTCCAG---G---TCTCCGTCCAAATCT 896
||||||||||||||||||| |||||||||||||||||| | |||||||||||||||
Sbjct 1007 AGGGCAATGTCGAGATCAAAGTCCAGGTCCAGGTCCAGATCGAGGTCTCCGTCCAAATCT 1066
Query 897 CCTCCCAAGGTTCGTGAAGGCAGTGTGTGATTTTGTTAGGCGGTGAAAA 945
|||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1067 CCTCCCAAGGTTCGCGAAGGCAGTGTGTGATTTTGTTAAGCGGTGAAAA 1115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46265649387
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5