BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937743
Length=1234
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49450.1 | Symbols: | F-box and associated interaction doma... 1419 0.0
> AT3G49450.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:18337305-18338498 REVERSE LENGTH=1194
Length=1194
Score = 1419 bits (768), Expect = 0.0
Identities = 1066/1206 (88%), Gaps = 36/1206 (3%)
Strand=Plus/Plus
Query 32 ATGATGAAAAAACGGAAGAGGCACGTCTCCAAGGAAGATGTTGCCCTAACCATATCTTCT 91
||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGATGAAAAAACGGAAGAGGAAAGTCTCCAAGGAAAATGTTGCCCTAACCATATCTTCT 60
Query 92 TCATTGGGTGAATATGGAGAGAACTCGGGTACGTTGCCAA-TGGATCTCATGGTTGAAAT 150
||| |||||||||||||||||||||||||||||||||||| | ||||||||||| |||||
Sbjct 61 TCAGTGGGTGAATATGGAGAGAACTCGGGTACGTTGCCAACT-GATCTCATGGTCGAAAT 119
Query 151 ACTCTCCAGAGTGCCAGCGAAATCGGCCGCGAAGTTTCATTGCGTGTCAAA-GAATTGGA 209
||||||||| ||||| |||||||||||||||| ||| | |||||||||||| | ||||||
Sbjct 120 ACTCTCCAGGGTGCCTGCGAAATCGGCCGCGAGGTTCCGTTGCGTGTCAAATG-ATTGGA 178
Query 210 ATTCTCTTCTCCGCAGTTCATATTTCACCAACCTGTACCTTACGAGGT-CTCCTACTCGG 268
||||||||||||||||| ||||| |||||||||||| ||| | ||||| || | |||||
Sbjct 179 ATTCTCTTCTCCGCAGTCCATATCTCACCAACCTGTTCCTGAAGAGGTCCT-CGGCTCGG 237
Query 269 CCACGTCTCCTAATCACTTTTCAAGCTGAGGGTAAGTGGTCTTTCTTCTCATCACCCGAG 328
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 238 CCACATCTCCTAATCACTTTTCAAGCTGAGGGTAAGTGGTCTTTCTTCTCATCCCCCGAG 297
Query 329 TACCTGATTTCAGACCAGAACTCAAATCTTGTAGTTGTTGATAATCATATGGATGTCCCT 388
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TATCTGATTTCAGACCAGAACTCAAATCTTGTAGTTGTTGATAATCATATGGATGTCCCT 357
Query 389 AAAGATTACTCGTTTGGAGTTTGTGAACCTGTATGTGGATTGTTGTGTACTAG-AGATGA 447
||||||||||||||||||||||||| ||||| ||||||||| |||||||||| | ||||
Sbjct 358 AAAGATTACTCGTTTGGAGTTTGTGTTCCTGTTTGTGGATTGATGTGTACTAGCA-ATGA 416
Query 448 GTGGGTTTTAAGTAGAAAGAAGGATGCAAGGATGATGATATGTAACCCTAGCACAAGACA 507
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 417 GTGGGTTTTAAGTAGAAAGAGGGATGCAAGGATGATGATATGTAACCCTAGCACAGGACA 476
Query 508 ATTCCAATCTTTACCCAAAGTGAGATCGAGAAGGAATAAGGTTATAACCTACATCGGGTA 567
|||| ||||||||||||||||||||||| | ||| ||| ||||||||||| ||||| ||
Sbjct 477 ATTCAAATCTTTACCCAAAGTGAGATCGTGTAGGGGTAATGTTATAACCTATATCGGTTA 536
Query 568 TGATCCAATCGAAAAAGAGTATAAGGTTTTGTGCATGACAATTTGTGA-AAGGCCATATA 626
| |||||||||||||| | |||||||| ||||||||||| ||| |||| ||| |||| ||
Sbjct 537 TAATCCAATCGAAAAACAATATAAGGTATTGTGCATGACGATTCGTGAGAAG-CCATTTA 595
Query 627 TGTTCAAAGCTGAAGAGCATCAAGTTCTTACACTAGGAACGGGTAAATTGAAATGGAGAA 686
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 596 AGTTCAAAGCTGAAGAGCATCAAGTTCTTACACTAGGAACGGGCAAACTGAAATGGAGAA 655
Query 687 TGCTTAAATGTTTTGTCGAGCATTTCCCTCATCATAA-GGA--GATTTGCATCAACGGGG 743
||||| |||||| |||||| |||| |||| || || | || ||||||||||||||| |
Sbjct 656 TGCTTGAATGTTCTGTCGATCATTACCCTTATTATCATGGCTCGATTTGCATCAACGGCG 715
Query 744 TGTTGTATTACTTAGCTGTGAA-AGATGAGACTAGAGAAGATATAATAGTTTGCTTTCAT 802
| |||| |||||||||| |||| || |||| ||| |||| |||| | ||||| |||||||
Sbjct 716 TTTTGTTTTACTTAGCTATGAAGAG-TGAGTCTAAAGAATATATGACAGTTTCCTTTCAT 774
Query 803 GTTAAGCATGAGAAGTTCCA-GTTTATACTGAACAAAGCTCCGTTGTCAACTTTGATAAA 861
| ||| ||||||| ||| | |||||||| |||| ||| || ||||||||| || |||||
Sbjct 775 ATGAAGGATGAGAATTTC-ATGTTTATACCGAACCAAGATCTGTTGTCAACATTAATAAA 833
Query 862 TTACAATGGGAAA-TTAGGAGGAATCCGTCAT---------GGCTTTATGGAAGGTGGAG 911
|||||| |||| ||||||||||| |||||| ||||||||||| |||||||
Sbjct 834 TTACAA-GGGACGCTTAGGAGGAATTCGTCATAAATCATTTGGCTTTATGGATGGTGGAG 892
Query 912 TTGCAGGCTATGAGTTGTGGGAT-CTTGATATTGAAAAAGAGGATTGGACAAGG-CATAT 969
|| ||||| |||||||||| || |||||| ||| ||| |||| |||| |||| | |||
Sbjct 893 ATGTAGGCTTTGAGTTGTGG-ATTCTTGATGTTGTAAATCAGGAATGGATAAGGTC-TAT 950
Query 970 TCACATATTGCCGCCTATGTGGAAGCAGGTAGTTGGGGAGACTAGAGTTTACGTTGTTGG 1029
|||| ||||||| |||||||||||| | || ||||||||||||||||||||| |||||||
Sbjct 951 TCACGTATTGCCACCTATGTGGAAGGATGTCGTTGGGGAGACTAGAGTTTACTTTGTTGG 1010
Query 1030 GATGATCGGTACAAGTGAAATTGTGTTTTCTCCATTCGTGAAGTCTAACCCTTTCTACAT 1089
||| ||||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1011 GATAATCGGTAGTTGTGAAGTTGTGTTTTCTCCATTCGTCAAGTCCAACCCTTTCTACAT 1070
Query 1090 CTTTCACTTAAATATAGA-GAGGAACTCTATCACAAGAGTTGAAATCCAAGGGACTGGAC 1148
|||||||||| |||| || ||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1071 CTTTCACTTAGATAT-GAAGAGCAACTCTATCACAAGAGTTGAAATCAAAGGGACTGGAC 1129
Query 1149 CTCTTGAAGGTCAA-CAAGTTTACACCTTTATAAACCATATCGAGAATGTGAAGCTTATT 1207
|||||||||||||| || |||||||| ||| |||||||||||||||||||||| ||||||
Sbjct 1130 CTCTTGAAGGTCAAGCA-GTTTACACATTTGTAAACCATATCGAGAATGTGAATCTTATT 1188
Query 1208 ATGTAA 1213
||||||
Sbjct 1189 ATGTAA 1194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60642258360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5