BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937748
Length=472
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51690.1 | Symbols: ACS12 | 1-amino-cyclopropane-1-carboxyla... 342 1e-93
> AT5G51690.1 | Symbols: ACS12 | 1-amino-cyclopropane-1-carboxylate
synthase 12 | chr5:20997413-21001046 REVERSE LENGTH=3179
Length=3179
Score = 342 bits (185), Expect = 1e-93
Identities = 219/236 (93%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 34 AGCTTTACCTAAAACGACGCCGTCCTCCTCCCTCCAACCCGACGGAGTTACCGAGAACGT 93
|||| ||||| |||||||||||||||||||||||| |||||||||| ||||||||||| |
Sbjct 184 AGCTCTACCTTAAACGACGCCGTCCTCCTCCCTCCGACCCGACGGACTTACCGAGAACTT 243
Query 94 CGTCACGGACTAATCTCTTCTCTCGTGGAAACTCGATCGGACGAGTTCGAGCCTCCTCTC 153
||||||||||||||||||||||| || |||||||||||||||||||||| |||||| |
Sbjct 244 TTTCACGGACTAATCTCTTCTCTCGCGGGAACTCGATCGGACGAGTTCGAGTCTCCTCCC 303
Query 154 GAGCTGTTCCTCTGGCGAAACCTTCCGATTCGCCTTATTACATTGGGTTGGAGAGAGTCA 213
|||| |||||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GAGCAGTTCCTGTAGCTAAACCTTCCGATTCGCCTTATTACATTGGGTTGGAGAGAGTCA 363
Query 214 AGACGGATCCGTACGATCGGATTAAGAACACGGATGGGATTATTCAGCTTGGATTA 269
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 364 AAACGGATCCGTACGATCGGATTACGAACACGGATGGGATTATTCAGCTTGGATTA 419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22454663709
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5