BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937749
Length=392
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02530.1 | Symbols: | TCP-1/cpn60 chaperonin family protein... 322 2e-87
> AT3G02530.1 | Symbols: | TCP-1/cpn60 chaperonin family protein
| chr3:528574-532582 REVERSE LENGTH=1965
Length=1965
Score = 322 bits (174), Expect = 2e-87
Identities = 196/207 (95%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 138 GATAATCGCTCTTAGAAGAGCAAAGAGGAGAAACATGGAACGTTTGGTTTTGGCATGTGG 197
||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1061 GATAATCGCCCTTAGAAGGGCAAAGAGGAGGAACATGGAACGTTTGGTTTTGGCATGTGG 1120
Query 198 TGGAGAAGCTGTGAACTCCGTTGATGACTTGACCCCTGATTCTCTTTGTTGGGCTGGATT 257
|||||||||||||||||| || ||||||||||||||||||| |||| ||||||||||| |
Sbjct 1121 TGGAGAAGCTGTGAACTCTGTCGATGACTTGACCCCTGATTGTCTTGGTTGGGCTGGACT 1180
Query 258 TGTATATGAGCACGTTCTTGGAAAGGAGAGGTACACATTTGTCGAGCAAGTGAAGAATCC 317
|||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||
Sbjct 1181 TGTATATGAGCACGTTCTTGGAGAGGAGAAGTACACATTTGTTGAGCAAGTGAAGAATCC 1240
Query 318 TCATTCATGTACTATCCTCATAAAAGG 344
|||||||||||||||||||||||||||
Sbjct 1241 TCATTCATGTACTATCCTCATAAAAGG 1267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18498531632
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5