BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937750
Length=2773
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49490.1 | Symbols: | unknown protein; Has 722 Blast hits t... 1513 0.0
> AT3G49490.1 | Symbols: | unknown protein; Has 722 Blast hits
to 186 proteins in 64 species: Archae - 0; Bacteria - 30; Metazoa
- 72; Fungi - 48; Plants - 38; Viruses - 0; Other Eukaryotes
- 534 (source: NCBI BLink). | chr3:18344744-18348699
REVERSE LENGTH=3095
Length=3095
Score = 1513 bits (819), Expect = 0.0
Identities = 1094/1219 (90%), Gaps = 50/1219 (4%)
Strand=Plus/Plus
Query 1 TCGTTTTGGTGAGGAAAACGATGGCCGATGGATTTCGCAGCTATGGTGGTTTCTCTGGAA 60
|||||||||||| |||||||||| ||||||||||| | ||||| ||||||||||||||
Sbjct 33 TCGTTTTGGTGA-GAAAACGATGACCGATGGATTT--C-GCTATAATGGTTTCTCTGGAA 88
Query 61 TAGCGTACCCGTTGTGGCTCTCATCT------CCGCCT---CC-GC-C-TCATCCAGCTT 108
||||||||||||| |||||||||||| |||||| || | | |||||||||||
Sbjct 89 TAGCGTACCCGTTTTGGCTCTCATCTCCACCACCGCCTACACCTCCACATCATCCAGCTT 148
Query 109 CTGCGCCGCCGTTTCAACCAAGCAATCCGGTTGAATCCTATGATCCAACCAAAGAAGTGT 168
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 149 CTGCGCCGCCGTTTCAACAAAGCAATCCGGTTGAATCCTATGATCCAGCCAAAGAAGTGT 208
Query 169 TTGATCCGATGA---TGTATCCCGGCTCTTATCAACGATCGCCGGCTGATTGGTCAAATA 225
|||||||||||| |||||| | |||||||||||||||||||||| ||||||||||||
Sbjct 209 TTGATCCGATGATGTTGTATCATGACTCTTATCAACGATCGCCGGCTAATTGGTCAAATA 268
Query 226 ATCCATCGTATCGTGAAAATTCTCGCTCTCAGACGCCTTCCTCATCGTTTTACGCTGACA 285
| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 269 ACCCATCGTATCGTGAAAATTCTCGCTCTCAGACTCCTTCTTCATCGTTTTATGCTGACA 328
Query 286 ATACTCGACTTGGAAATTGTGGTCCAAGAGGTGAAGA-T-TAC-TATAAAGAAATGTTAT 342
| |||| || ||||||| |||||| |||||||||| | | | |||||||| |||||||
Sbjct 329 ACACTCAACATGGAAATAGTGGTCTTCGAGGTGAAGATTCTTCTTATAAAGATATGTTAT 388
Query 343 CACCGAGTGGATTTTACTCTTCAAGGGAATCATCATCTGATTTTGTGTCAC-T--TCCCG 399
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 389 CACCGAGTGGATTTTACTCTTCAAGGGAATCATCATCTGATTTTGTGTCACTTCCTCCCA 448
Query 400 CTGACAATTTCTGGGAGAGGCAACGTTTGAACTTTGCGCCTACCTACAACTCAGCTACCT 459
|||| ||||||| |||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 449 CTGAGAATTTCTCAGAGAGGCAACGTTTGAACTTTGAGCCTACCTACAGCTCAGCTACCT 508
Query 460 TAGCTCCAGTGTCTTCTTATGCAGAGATGCTAATCAAAAATTCTCGGGAAC-CATTCTTC 518
||||||| ||||||||||||||||| |||||||||| |||||||| || || |||||||
Sbjct 509 TAGCTCCTGTGTCTTCTTATGCAGATATGCTAATCAGAAATTCTCAGG-ACTCATTCTTT 567
Query 519 ACGCCTATTACGTCATCTGGTGTTTACGCTTCTAGCAATGTTGTTGATGAGAAACGTCCT 578
|| ||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 568 ACTCCTATCGCGTCATCTGGTGTTTACTCTTCTAGCAATGCTGTTGATGAGAAACGTCCT 627
Query 579 GG--ATT--TTACTT---TC--------CTGAAACTATGAATGTTGTCTCTGCTTCTCAT 623
|| ||| || ||| || |||||||||||||||||||||||||||||| |
Sbjct 628 GGATATTACTTTCTTGGCTCAGATAGATCTGAAACTATGAATGTTGTCTCTGCTTCTCGT 687
Query 624 GTGGAGCCTTACATAG-GTGTTACAGATTGTAATCCATCTTTGCCAATGCCGAATTTGAA 682
|||||||||||||| | ||| ||||||||||||||| ||||| |||||||||||||| |
Sbjct 688 GTGGAGCCTTACAT-GTGTGATACAGATTGTAATCCTTCTTTTCCAATGCCGAATTTTAT 746
Query 683 AACACAAGCTCTCTTTGATGGAAGTCAGACCGGGGTTCATGTAGGAGATGGAAGATCATT 742
|||||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||
Sbjct 747 AACACAAGCTCTCTTTGATGGAAGTCAGACTGGGCTTCGTGTAGGAGATGGGAGATCATT 806
Query 743 CCCGAGCAACAGTGATGTTTGTAGTCATGCGCCTGAGAATTTTTTGGGAGCTCAATCTAG 802
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||
Sbjct 807 CCCGAGCAACAGTGATGTTTGTAGTCATGCGCCTCAGAATTTTTTAGGAGCTCAATCCAG 866
Query 803 CTTGCAGAGTTCCTCTGTTGAACCAGTTAATTTCGATGTGTTGCTTGGATATGGTGAAGC 862
|||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 867 CTTGCAGAGTTCCTCTGTTGAACCAGTTAACTTCGATGTGTTACTGGGATATGGTGAAGC 926
Query 863 TACTGGTCATATGAAGCCTTTGCCCAAGAATCCAGATCTTCGCTAT-CGGATAGCTGGCT 921
|||||||||||| |||||||||||| |||||||| |||||| |||| ||| ||| |||||
Sbjct 927 TACTGGTCATATCAAGCCTTTGCCCGAGAATCCAAATCTTCCCTATCCGG-TAGTTGGCT 985
Query 922 CGCAAGGTTTGAGAAGCCCAG-GATCTTCCCACCCCCTACCAGCTAATATTAATTCCTCA 980
||||||||| |||||| || | |||||||| ||||| ||||| ||| ||||||||||||
Sbjct 986 CGCAAGGTTCGAGAAGTCC-GCGATCTTCCTACCCCTTACCATCTATTATTAATTCCTCT 1044
Query 981 GTGTCACTGA-TAAATGATAAACTAGAAGGTAGTGGTGTCTCCTCCCTTTATCAGAGGCC 1039
|||||||||| |||| ||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1045 GTGTCACTGATTAAA-GATGAAGTAGAAGGTAGTGGTGTCTCCTCCCTTTATCAGAGGCC 1103
Query 1040 TTACACTTTGGTTGCTGACAGTGAGAATGGTGTTTCTGAGAGCTCCTTGAAGAATGCAAC 1099
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1104 TTATACTTTGGTTGCTGACAGTGAGAATGGTGTTTCTGAGAGCTCCTTAAAGAATGCAAC 1163
Query 1100 TGAAGATTTAAATTGTCACGAGCCTCGATCTTGGAGCCACTTCATGGTAACCTCTGAGGG 1159
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 TGAGGATTTAAATTGTCACGAGCCTCGATCTTGGAGCCACTTCATGGTAACCTCTGAGGG 1223
Query 1160 ACCTTCAGCTCCCACAATG 1178
||||||||||||||| |||
Sbjct 1224 ACCTTCAGCTCCCACGATG 1242
Score = 1507 bits (816), Expect = 0.0
Identities = 1044/1148 (91%), Gaps = 39/1148 (3%)
Strand=Plus/Plus
Query 1656 CATGAGGCCGCGAA-GGGAGTTGCTAAAGACTTTC-AAGGTTTTATTGTCAAGCCACTAG 1713
||||||||||| || |||||||||||||||||||| |||| |||| ||||||||||||||
Sbjct 1795 CATGAGGCCGC-AACGGGAGTTGCTAAAGACTTTCAAAGG-TTTAGTGTCAAGCCACTAG 1852
Query 1714 ACAGCTTTGGCGTCAAAGAACCGGTGGATAAGAATGAAATGACCCAGAGTATTAAGAACA 1773
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1853 ACAGCTTTGGTGTCAAAGAACCGGTGGATAAGAATGAAATGACCCAGAGTATTAAGAACA 1912
Query 1774 TTCTTGCTTCCAACTTTCCTGATGGTGAAGAAAACAACCCACAAACTCTCTTGTACAAGA 1833
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1913 TACTTGCTTCCAACTTTCCTGATGGTGAAGAAAACCACCCACAAACTCTCTTGTACAAGA 1972
Query 1834 GTCTCTGGCTCGAAACTGAAGCTGCCTTATGTTCCACAACTTGCATGGCTCGGTATCATC 1893
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1973 ATCTCTGGCTCGAAACTGAAGCTGCCTTATGTTCCACAACTTGCATGGCTCGGTATCATC 2032
Query 1894 GGATCAAGAACGAGATTGATAATCTCAAATTTAACAGTAAAGAGATCTCTGCAGATGCAG 1953
|||||||||||||||||| |||||||||||| |||| ||||||||||||||| |||||||
Sbjct 2033 GGATCAAGAACGAGATTGGTAATCTCAAATTGAACAATAAAGAGATCTCTGCGGATGCAG 2092
Query 1954 CAACCTTTATGCAGGAGCCTTCTCTTAACCCCCAGAAATCGGTTCCCATCATGAACAATG 2013
|| |||||||||||| |||||||||||| | ||||||||||||||||||||| ||||
Sbjct 2093 TAAGCTTTATGCAGGAACCTTCTCTTAACACACAGAAATCGGTTCCCATCATG---AATG 2149
Query 2014 CAAATGCAGAGAAGGAGACAACTGAATCGATCAGAAAACATGGAAGCAGTTGTGGGAACA 2073
|||||||||| ||||| ||| ||||||| |||| ||||||||||||| ||||||||| |
Sbjct 2150 CAAATGCAGACAAGGATACACCTGAATCTATCATCAAACATGGAAGCAATTGTGGGAAAA 2209
Query 2074 ATGTAGTAACAATGAGTCATGATGCATCAC-AATGCTCTAGATTCAACTCAGATCCTGTG 2132
||| || ||||||||||||||||||||| | || |||||||| |||||||||||||||||
Sbjct 2210 ATGCAGCAACAATGAGTCATGATGCATC-CGAAAGCTCTAGAATCAACTCAGATCCTGTG 2268
Query 2133 GATGCAGTATTATCGCTTATGTCCAGAAGCTTT--TCG-GG--T------G-------GT 2174
||||||||||||||| ||||||||||||||||| | | || | | ||
Sbjct 2269 GATGCAGTATTATCGGTTATGTCCAGAAGCTTTACTGGTGGTTTAGAGCAGACCATTCGT 2328
Query 2175 ------TTAAGGCCTGATGTTGCAACCTCTGTAAAGATACCAGATGCAATACGACAGGAA 2228
||||||||||||| |||||||| || ||||||||| ||||| ||| | ||||||
Sbjct 2329 GGAAACTTAAGGCCTGATGATGCAACCTTTGCAAAGATACCGGATGCGATATGGCAGGAA 2388
Query 2229 ACCCCTGCATCCACTACAGAGAACAAACATA-ATGATGTTATAGACCGGTTTCAGAT-TC 2286
||| ||||||||||||||||||||||||||| | || |||||||||||||||||||| |
Sbjct 2389 ACCTCTGCATCCACTACAGAGAACAAACATAGA-GAGGTTATAGACCGGTTTCAGATAT- 2446
Query 2287 TGAAGCAGCAGGAAACAGAGCGCAAACTCAAGTCTCAGAAGTTACCAGATTCAGACATTG 2346
||||| ||||||||||||||||||| ||||||||||||||| | || |||||||||||||
Sbjct 2447 TGAAGGAGCAGGAAACAGAGCGCAAGCTCAAGTCTCAGAAGCTCCCTGATTCAGACATTG 2506
Query 2347 ATGTTATAGACCGGTTTCAGATTCTCAAGCAGCAGGAAACAAACCGCAAACTCAAGACTC 2406
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 2507 ATGTTATAGACCGGTTTCAGATTCTCAAGCAGCAGGAAACAAATCGCAAACTCAAGGCTC 2566
Query 2407 AAAACTGTTCAGAGACAAAAAAGGGTGACCAGGAGGAGAAACTAGAAGCTTCAGTGATGG 2466
|||| ||| |||| ||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 2567 AAAAATGTCCAGAAACAAAAAAGGGTGACCAGGAGGACAAACTAGAAGGTTCAGTGATGG 2626
Query 2467 CTAATATTGGCAGAAGCAGCCATGTGAGTGATGTTATGGATAGATTCCAGATACTGAAAC 2526
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2627 CTAATATGGGCAGAAGCAGCGATGTGAGTGATGTTATGGATAGATTCCAGATACTGAAAC 2686
Query 2527 GCCGGGAAGCTGAACAAGTGAAGAAATCTCTCAACAACTTGGATGTAGATTCAGATTCAG 2586
|||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||
Sbjct 2687 GCCGGGAAGCTGAACAAGTGAAGAAATCTCTCAACAGCATGGATGTAGATTCGGATTCAG 2746
Query 2587 ACAACGACCAGCCACAAAAGCGTGATCATCTCTGGTCAGCTTCAATGAT-CCCAATACGC 2645
| || |||||||||||||||||||||||||||||||||| ||| | || |||||||||
Sbjct 2747 AAAATGACCAGCCACAAAAGCGTGATCATCTCTGGTCAGATTCGTT-ATTCCCAATACGT 2805
Query 2646 GGACATTCTCAGAGAGAAACAGGCGCTGCGGACACTGAGCAATCTGCATCTGGCAAAGGC 2705
||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||
Sbjct 2806 GGACATTCTCAGAGAGAAACATGCGCCGCGGACACTGAACAATCTGCATCTGGCAAAGGA 2865
Query 2706 TACGAGAGCCCGACCTCGGACTGGGAACATGTCATCAAGGATGATTGAGTAGTGAAACTT 2765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2866 TACGAGAGCCCGACCTCGGACTGGGAACATGTCATCAAGGATGATTGAGTAGTGAAATTT 2925
Query 2766 CCTTGGAC 2773
||||||||
Sbjct 2926 CCTTGGAC 2933
Score = 767 bits (415), Expect = 0.0
Identities = 473/502 (94%), Gaps = 0/502 (0%)
Strand=Plus/Plus
Query 1158 GGACCTTCAGCTCCCACAATGATAGCGGATAATGAGAATGCTCAATCAGCTGTCAACTAT 1217
|||||||||||||| || |||| ||||||||||||||||||||| ||||||| ||||||
Sbjct 1267 GGACCTTCAGCTCCTACGATGAAAGCGGATAATGAGAATGCTCAGTCAGCTGGCAACTAC 1326
Query 1218 AAACCCCCTTTCGAAGGTGGTACCACTCAACCTAGTGAAGATGTTCCAACTAACCAAAAG 1277
|||||||||||||||||| |||| |||||||||||||||||||||||||| |||||| ||
Sbjct 1327 AAACCCCCTTTCGAAGGTAGTACTACTCAACCTAGTGAAGATGTTCCAACCAACCAAGAG 1386
Query 1278 TCTTGTAATCTCCAGGAACAAACATTTGATATAATGGATAGAGATAAGAAGATCAGGTTG 1337
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1387 TCTTGTAATCTCCAGAAACAAACATTTGATATAATGGATAGAGATAAGAAGATCAGATCG 1446
Query 1338 TTGACAGATCTGGGTCTCGACTTGAGTAGTAGATCAAATGCAGATGATGTCTCAACTGGC 1397
||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1447 TTGACAGATGTGGGGCTCGATTTGAGTAGTAGATCAAATGCAGATGATGTCTCAACTGGC 1506
Query 1398 CGATCACCTGAAAAGCACTTCTGTGATCAAGGAGATTTCCCATCTCCGACTTCTTCTCCA 1457
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1507 CGATCACCTGAAAGGCACTTCTGTGATCAAGGAGATTTCCCATCTCCAACTTCTTATCCA 1566
Query 1458 AGAGTTTCTTCTGTGGTTAACGCCATGCATAATTTGTCAGAAGTGCTTGTTTATGAATGC 1517
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1567 AGAGTTTCTTCTGTTGTTAACGCCATGCATAATTTGTCAGAAGTGCTTGTTTATGAATGC 1626
Query 1518 TTTAACAATGGAAGCTGGCTGAAGCTGGAGCAACTTGAGAACCTTGACAAAGTAGTAGAT 1577
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1627 TTTAACAATGGAAGCTGGCTGAAGCTGGAGCAACTTGAGAACCTTGATAAAGTAGTAGAT 1686
Query 1578 AATCTCACAAAGTGCTTAAAGAAAATAACTGATAATAAGTCGACAGCAGGGGAAGCCTCA 1637
|||||||||||||| || |||||||| |||||||||||| | |||||||||||||| ||
Sbjct 1687 AATCTCACAAAGTGTTTGAAGAAAATTACTGATAATAAGACAACAGCAGGGGAAGCAACA 1746
Query 1638 CTTCCAACGCAAGCTATGCATG 1659
|||||||||||| |||||||||
Sbjct 1747 CTTCCAACGCAATCTATGCATG 1768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137758425478
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5