BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937752
Length=751
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49450.1 | Symbols: | F-box and associated interaction doma... 436 1e-121
> AT3G49450.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:18337305-18338498 REVERSE LENGTH=1194
Length=1194
Score = 436 bits (236), Expect = 1e-121
Identities = 301/331 (91%), Gaps = 10/331 (3%)
Strand=Plus/Plus
Query 64 AAATCAGCCGCGAGGTTTCATATTGCGTGTCCAA-GAATTGGAAACCTCTTCTCCGAAGT 122
||||| ||||||||| ||| ||||||||| || | ||||||| |||||||||| |||
Sbjct 139 AAATCGGCCGCGAGG-TTC-CGTTGCGTGTCAAATG-ATTGGAATTCTCTTCTCCGCAGT 195
Query 123 CCATATTTCACCAACCTGTACCTGACGAGAT-CTCCTGCTCGGCCATTTCTCCTAATCAC 181
|||||| |||||||||||| ||||| ||| | || | ||||||||| ||||||||||||
Sbjct 196 CCATATCTCACCAACCTGTTCCTGAAGAGGTCCT-CGGCTCGGCCACATCTCCTAATCAC 254
Query 182 TTTTCAAGCTGAGGGTAAGTGGTCTTTCTTCTCATCACCCGAGTA-CATGATTTCAGACC 240
|||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||
Sbjct 255 TTTTCAAGCTGAGGGTAAGTGGTCTTTCTTCTCATCCCCCGAGTATC-TGATTTCAGACC 313
Query 241 AGAACTCAAATCTTGTAGTTGTTGATAATCATATGGATGTCCCTAAAGATTACTCGTTTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 AGAACTCAAATCTTGTAGTTGTTGATAATCATATGGATGTCCCTAAAGATTACTCGTTTG 373
Query 301 GAGTTTGTGAACCTGTATGTGGATTGTTGTGTACTAG-AGATGAGTGGGTTTTAAGTAGA 359
||||||||| ||||| ||||||||| |||||||||| | ||||||||||||||||||||
Sbjct 374 GAGTTTGTGTTCCTGTTTGTGGATTGATGTGTACTAGCA-ATGAGTGGGTTTTAAGTAGA 432
Query 360 AAGAAGGATGCAAGGATGATGATATGTAACC 390
|||| ||||||||||||||||||||||||||
Sbjct 433 AAGAGGGATGCAAGGATGATGATATGTAACC 463
Score = 370 bits (200), Expect = 1e-101
Identities = 278/314 (89%), Gaps = 12/314 (4%)
Strand=Plus/Plus
Query 424 GTGGAGTTGCAGGCTTTGAGTTGTGGGA-TCTTGATACTGAAAAAGAGGATTGG-TCAAG 481
|||||| || |||||||||||||| ||| ||||||| || ||| |||| ||| | |||
Sbjct 887 GTGGAGATGTAGGCTTTGAGTTGT-GGATTCTTGATGTTGTAAATCAGGAATGGAT-AAG 944
Query 482 G-CATATTCACATATTGCCGCCTATGTGGAAGCA-GGCTGTTGCGGAGACTAGAGTTTAC 539
| | ||||||| ||||||| |||||||||||| | | | |||| ||||||||||||||||
Sbjct 945 GTC-TATTCACGTATTGCCACCTATGTGGAAGGATGTC-GTTGGGGAGACTAGAGTTTAC 1002
Query 540 GTTGTTGGGATGATCGGTACAAATGAAATTGTGTTTTCTCCATTCGTCAAGT-CAATCCC 598
|||||||||| ||||||| |||| |||||||||||||||||||||||| ||| |||
Sbjct 1003 TTTGTTGGGATAATCGGTAGTTGTGAAGTTGTGTTTTCTCCATTCGTCAAGTCCAA-CCC 1061
Query 599 TTTCTACATCTTTCACTTAGATATGAAGAGGAACTCTATCACAAGAGTTGAAATCAAAGG 658
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1062 TTTCTACATCTTTCACTTAGATATGAAGAGCAACTCTATCACAAGAGTTGAAATCAAAGG 1121
Query 659 GACTGGACCTCTTGAAGGTCAA-CAAGTTTACACCTTTATAAACCATATCGAGAATGTGA 717
|||||||||||||||||||||| || |||||||| ||| |||||||||||||||||||||
Sbjct 1122 GACTGGACCTCTTGAAGGTCAAGCA-GTTTACACATTTGTAAACCATATCGAGAATGTGA 1180
Query 718 AGCTTATTATGTAA 731
| ||||||||||||
Sbjct 1181 ATCTTATTATGTAA 1194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36469990722
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5