BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937752 Length=751 Score E Sequences producing significant alignments: (Bits) Value AT3G49450.1 | Symbols: | F-box and associated interaction doma... 436 1e-121 > AT3G49450.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:18337305-18338498 REVERSE LENGTH=1194 Length=1194 Score = 436 bits (236), Expect = 1e-121 Identities = 301/331 (91%), Gaps = 10/331 (3%) Strand=Plus/Plus Query 64 AAATCAGCCGCGAGGTTTCATATTGCGTGTCCAA-GAATTGGAAACCTCTTCTCCGAAGT 122 ||||| ||||||||| ||| ||||||||| || | ||||||| |||||||||| ||| Sbjct 139 AAATCGGCCGCGAGG-TTC-CGTTGCGTGTCAAATG-ATTGGAATTCTCTTCTCCGCAGT 195 Query 123 CCATATTTCACCAACCTGTACCTGACGAGAT-CTCCTGCTCGGCCATTTCTCCTAATCAC 181 |||||| |||||||||||| ||||| ||| | || | ||||||||| |||||||||||| Sbjct 196 CCATATCTCACCAACCTGTTCCTGAAGAGGTCCT-CGGCTCGGCCACATCTCCTAATCAC 254 Query 182 TTTTCAAGCTGAGGGTAAGTGGTCTTTCTTCTCATCACCCGAGTA-CATGATTTCAGACC 240 |||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| Sbjct 255 TTTTCAAGCTGAGGGTAAGTGGTCTTTCTTCTCATCCCCCGAGTATC-TGATTTCAGACC 313 Query 241 AGAACTCAAATCTTGTAGTTGTTGATAATCATATGGATGTCCCTAAAGATTACTCGTTTG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 314 AGAACTCAAATCTTGTAGTTGTTGATAATCATATGGATGTCCCTAAAGATTACTCGTTTG 373 Query 301 GAGTTTGTGAACCTGTATGTGGATTGTTGTGTACTAG-AGATGAGTGGGTTTTAAGTAGA 359 ||||||||| ||||| ||||||||| |||||||||| | |||||||||||||||||||| Sbjct 374 GAGTTTGTGTTCCTGTTTGTGGATTGATGTGTACTAGCA-ATGAGTGGGTTTTAAGTAGA 432 Query 360 AAGAAGGATGCAAGGATGATGATATGTAACC 390 |||| |||||||||||||||||||||||||| Sbjct 433 AAGAGGGATGCAAGGATGATGATATGTAACC 463 Score = 370 bits (200), Expect = 1e-101 Identities = 278/314 (89%), Gaps = 12/314 (4%) Strand=Plus/Plus Query 424 GTGGAGTTGCAGGCTTTGAGTTGTGGGA-TCTTGATACTGAAAAAGAGGATTGG-TCAAG 481 |||||| || |||||||||||||| ||| ||||||| || ||| |||| ||| | ||| Sbjct 887 GTGGAGATGTAGGCTTTGAGTTGT-GGATTCTTGATGTTGTAAATCAGGAATGGAT-AAG 944 Query 482 G-CATATTCACATATTGCCGCCTATGTGGAAGCA-GGCTGTTGCGGAGACTAGAGTTTAC 539 | | ||||||| ||||||| |||||||||||| | | | |||| |||||||||||||||| Sbjct 945 GTC-TATTCACGTATTGCCACCTATGTGGAAGGATGTC-GTTGGGGAGACTAGAGTTTAC 1002 Query 540 GTTGTTGGGATGATCGGTACAAATGAAATTGTGTTTTCTCCATTCGTCAAGT-CAATCCC 598 |||||||||| ||||||| |||| |||||||||||||||||||||||| ||| ||| Sbjct 1003 TTTGTTGGGATAATCGGTAGTTGTGAAGTTGTGTTTTCTCCATTCGTCAAGTCCAA-CCC 1061 Query 599 TTTCTACATCTTTCACTTAGATATGAAGAGGAACTCTATCACAAGAGTTGAAATCAAAGG 658 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1062 TTTCTACATCTTTCACTTAGATATGAAGAGCAACTCTATCACAAGAGTTGAAATCAAAGG 1121 Query 659 GACTGGACCTCTTGAAGGTCAA-CAAGTTTACACCTTTATAAACCATATCGAGAATGTGA 717 |||||||||||||||||||||| || |||||||| ||| ||||||||||||||||||||| Sbjct 1122 GACTGGACCTCTTGAAGGTCAAGCA-GTTTACACATTTGTAAACCATATCGAGAATGTGA 1180 Query 718 AGCTTATTATGTAA 731 | |||||||||||| Sbjct 1181 ATCTTATTATGTAA 1194 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36469990722 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5