BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937757
Length=1450
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49530.1 | Symbols: ANAC062, NTL6, NAC062 | NAC domain conta... 2121 0.0
> AT3G49530.1 | Symbols: ANAC062, NTL6, NAC062 | NAC domain containing
protein 62 | chr3:18362443-18364913 REVERSE LENGTH=1802
Length=1802
Score = 2121 bits (1148), Expect = 0.0
Identities = 1354/1455 (93%), Gaps = 7/1455 (0%)
Strand=Plus/Plus
Query 1 TTCG-TTAAAA-AGCAGCATCAATGAATCAGAATCTTCAAGTATTATCAATGGATTCGTT 58
|||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 175 TTCGTTTAAAAGAGCAGCATCAATGAATCAGAATCTTCATGTATTATCAATGGATTCGTT 234
Query 59 ACCAGTTGGATTAAGATTCCGTCCTACAGACGAGGAGCTCATCCGCTACTATCTCCGGAG 118
|||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||
Sbjct 235 ACCAGTTGGATTAAGATTCCGTCCAACAGACGAGGAGCTAATCCGTTACTATCTCCGTAG 294
Query 119 GAAAATCAACGGCCACGATGACGACGTCAAAGCTATTCGTGAGATCGATATTTGTAAATG 178
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 295 GAAAATCAACGGTCACGATGACGACGTCAAAGCTATCCGTGAGATCGATATTTGCAAATG 354
Query 179 GGAACCTTGGGATTTACCTGATTTTTCTGTGATCAAAACTAAAGATTCAGAGTGGCTCTT 238
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 355 GGAACCTTGGGATTTACCTGATTTTTCTGTGATCAAAACTAAAGACTCAGAGTGGCTCTA 414
Query 239 CTTCTGTCCATTGGATCGGAAGTATCCGAATGGAAGTAGACAGAACCGGGCAACAGTTGC 298
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 415 CTTCTGTCCATTGGATCGGAAGTATCCGAGTGGAAGTAGACAGAACCGGGCAACAGTTGC 474
Query 299 AGGCTATTGGAAGGCGACTGGAAAAGACCGGAAGATAAAGTCTGGTAAAACTAATATTAT 358
||| || ||||| || || |||||||||||||||||||| || ||||| ||||| |||||
Sbjct 475 AGGGTACTGGAAAGCCACAGGAAAAGACCGGAAGATAAAATCCGGTAAGACTAACATTAT 534
Query 359 TGGTGTGAAGAGAACTCTGGTTTTCCACGCGGGTCGAGCTCCTAGGGGAACACGAACCAA 418
|||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||
Sbjct 535 TGGTGTGAAGAGAACTCTAGTTTTCCACGCGGGTAGAGCTCCTAGGGGGACACGAACCAA 594
Query 419 TTGGGTTATTCATGAGTATCGTGCCACGGAGGATGATCTTAGTGGCACCAATCCTGGCCA 478
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 595 TTGGATTATTCATGAGTATCGTGCCACGGAGGATGATCTTAGTGGTACCAATCCTGGCCA 654
Query 479 GAATCCGTTTGTCATATGTAAATTGTTCAAGAAACAAGAACTGAATTTAGCAGAAGAAGA 538
|| ||||||||| ||||| ||||||||||||||| |||||||| ||||| ||||||||
Sbjct 655 GAGTCCGTTTGTTATATGCAAATTGTTCAAGAAAGAAGAACTGGTTTTAGGGGAAGAAGA 714
Query 539 TTCGAAGTCGGATGAAGTTGAAGAACCTGCTGTCTCGTCTCCAACTGTTGAAGTGAGTAA 598
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 715 TTCGAAGTCAGATGAAGTTGAAGAACCTGCTGTCTCGTCTCCAACTGTCGAAGTGACTAA 774
Query 599 GTCAGAAGTATCTGAGGTCACTAAAACCGAAGATGTGAAGCGTCTTGACGTTGCAGAATC 658
|||||||||||||||||| | |||||| ||||| |||||||||| |||| | ||||||||
Sbjct 775 GTCAGAAGTATCTGAGGTAATTAAAACAGAAGACGTGAAGCGTCATGACATAGCAGAATC 834
Query 659 TTCTCTTGTAATCTCTGGAGATTCTCATAGTGATGCTTGTGATGAGGCTACAACTGCCGA 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 835 TTCTCTTGTAATCTCTGGAGATTCTCATAGTGATGCTTGTGATGAGGCTACAACCGCAGA 894
Query 719 GCTTGTAGATTTTGATTGGTATCCGGAATTGGAGTCCCTGGATTACACGCTGTTCTCTCC 778
||||||||||||| | ||||||||||||||||||||| | |||| |||||||||||||||
Sbjct 895 GCTTGTAGATTTTAAATGGTATCCGGAATTGGAGTCCTTAGATTTCACGCTGTTCTCTCC 954
Query 779 ATTACATTCTCAAGTTCAATCCGAGCTTGGATCATCTTACAACACATTCCAGCCTGGCTC 838
|||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 955 ATTACACTCTCAAGTCCAATCTGAGCTTGGATCCTCTTACAACACATTCCAGCCTGGCTC 1014
Query 839 GAGTAATTTTTCAGGGAACAACAACAACAGCTTCCAAATTCAGACTCAGTATGGTACAAA 898
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1015 GAGTAATTTTTCAGGGAACAACAACAACAGCTTCCAAATCCAGACTCAGTATGGTACAAA 1074
Query 899 TGAAGTAGATACATATATATCCGAGTTTCTTGATTCGATTCTTAAGAGCCCAGACGAGGA 958
|||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 1075 TGAAGTAGATACGTATATATCTGATTTTCTTGATTCGATTCTCAAGAGCCCAGACGAGGA 1134
Query 959 TCCGGAGAAGCACAAGTATGTTTTGCAGAGTGGTTTTGATGGTGCAGCACCAGATCAGAT 1018
||| ||||||||||||||||||||||| ||||||||||||| || |||||||||||||||
Sbjct 1135 TCCAGAGAAGCACAAGTATGTTTTGCAAAGTGGTTTTGATGTTGTAGCACCAGATCAGAT 1194
Query 1019 TGCGCCAGCT-TATCAGCAGAGCTCAGCAGTTAACATGAGCAATGATGTTTCAGTAACGG 1077
||||| || | | ||| ||| ||||||||||| |||||||||||||||||||||| ||||
Sbjct 1195 TGCGCAAG-TGTGTCAACAGGGCTCAGCAGTTGACATGAGCAATGATGTTTCAGTGACGG 1253
Query 1078 GTATCAAGATTAAGAGTCGGCAGGCACAATCCTCAGGTTGTACCAATGACTATATAGCGC 1137
||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1254 GTATCCAGATTAAGAGTCGCCAGGCACAACCCTCAGGTTATACCAATGACTATATAGCGC 1313
Query 1138 AGGGAAATGGCCCGAGAAGGCTGCGTCTGCAAAGTAACCTTAATGGCATTAACTCGAAGA 1197
|||||||||| || |||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1314 AGGGAAATGGTCCAAGAAGGCTGCGTCTGCAAAGTAACTTTAATGGCATTAACACGAAGA 1373
Query 1198 ATCCAGAGCTTCAAGCTATCAAGAGAGAGGCTGAGGACACGGTTGGAGAAACTTTAAAGA 1257
|||| |||||||||||||| ||||||||||||||||||||||||||||||| | ||||||
Sbjct 1374 ATCCTGAGCTTCAAGCTATAAAGAGAGAGGCTGAGGACACGGTTGGAGAAAGTATAAAGA 1433
Query 1258 AAGGGTGTGGAAGGCTAAAGAGATCAAAGAACGTAAC-GGATTTTGTGTTTAAAAAGATT 1316
|| ||||||||| ||||| ||||||||||||||| || || |||||||||||||||||||
Sbjct 1434 AAAGGTGTGGAAAGCTAATGAGATCAAAGAACGTGACCGG-TTTTGTGTTTAAAAAGATT 1492
Query 1317 ATGTCGGTGAAATGTTCATACAGAGGACTCTTTAGGGCGGCGGTAGTTGCAGTTGTGTTC 1376
| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1493 ACGTCGGTGAAATGTTCATATGGAGGACTCTTTAGGGCGGCAGTAGTTGCAGTTGTGTTC 1552
Query 1377 TTGATGTCAGTCTGCAGTCTAACCGTAGACTTCAGAGCATCTGCAATGCCCTGAACACA- 1435
|||||||||||||||||||||||||| |||||||||||||||||| || |||||| ||
Sbjct 1553 TTGATGTCAGTCTGCAGTCTAACCGTCGACTTCAGAGCATCTGCAGTGTCCTGAAAACTG 1612
Query 1436 AAACTTTTTGTAAAT 1450
|||||||||||||||
Sbjct 1613 AAACTTTTTGTAAAT 1627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71485576080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5