BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937768
Length=992
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49610.1 | Symbols: | Domain of unknown function (DUF313) ... 990 0.0
> AT3G49610.1 | Symbols: | Domain of unknown function (DUF313)
| chr3:18390413-18391417 REVERSE LENGTH=1005
Length=1005
Score = 990 bits (536), Expect = 0.0
Identities = 849/992 (86%), Gaps = 53/992 (5%)
Strand=Plus/Plus
Query 12 GGGGATA-GATATGTGGTCGCGTTTTCGTGATTTGGCGGATAAAGCTGATATGCTATATG 70
||||| | ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 36 GGGGA-AGGATATGTGGTCACGTTTAAGTGATTTGGCGGATAAAGCTGATATGCTATATG 94
Query 71 AAAGAGAAGGAGTATCCAAAGACCGCAAGAGTGTCTC---AGAAGAAGAAG---AGAAGA 124
||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 95 AAAGAGAAGGAATATCCAAAGACCGCAAGAGTGTCTCAGAAGAAGAAGAAGAAAAGAAGA 154
Query 125 CGAGGTTCAGTATTTTGGTGGAT-TACGTGGGTATGTTATGTGATGAAGAAGAACGTCGT 183
|||| |||||||||||||||||| | |||||||| |||||||||| |||| |||||||||
Sbjct 155 CGAGATTCAGTATTTTGGTGGATCT-CGTGGGTAGGTTATGTGATCAAGAGGAACGTCGT 213
Query 184 ATTCTTGGATCATCTCCCACAGAAACCAAGACTCTCTTTGATGATAGCGAGAAGAG---C 240
| ||||||||||||||| ||| ||||||| ||||| ||||| | ||| || ||||| |
Sbjct 214 ACTCTTGGATCATCTCCTACAAAAACCAACACTCTTTTTGAGGGTAGTGAAAAGAGCCAC 273
Query 241 ------C-T--CTTGGATCATCTCCCACAAAAACCAAGGTCTTCCCTTGAGTAttttttt 291
| | ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 274 TTGGATCATCACTTGGATCATCTCCCACAAAAACCAAGGTCTTCCCTTGAGTGTTTTTTT 333
Query 292 ACCAGAGTATACACACGACGAAACAATGAAACACTTAATAGAGTTTCTGCTTCTTCATCG 351
|| ||||||||||| ||||||||| || || | || | ||||| |||||||||||
Sbjct 334 ACTAGAGTATACACGCGACGAAACCAT-AA----T-AAC-G--TTTCTACTTCTTCATCG 384
Query 352 CTCTTCAACACGGCTGAGTTTGAGAGGACGGAGACTAAAAGCCCTCCAAACCCTAATTTG 411
||||||||||||| ||||||||||||||||||||||||||||||| ||| || |||||
Sbjct 385 CTCTTCAACACGGATGAGTTTGAGAGGACGGAGACTAAAAGCCCTACAATCCGTAATTCC 444
Query 412 CAATCTTCCCCGTCTTCGTGTGTAATGGAGAACACAAAACGCAAGAGGTATCAGAAAAGG 471
|||||||| |||||||||||| ||||||||||||||||||||||||||||||| || |
Sbjct 445 CAATCTTCACCGTCTTCGTGTCTAATGGAGAACACAAAACGCAAGAGGTATCA-AA--G- 500
Query 472 AGTAGTGGTAAATCCAAGAAAGCAAAGGTTGATCCTTTATCACAGACAGCTA-GAGAG-G 529
||||||||||||||||||| ||||| |||||||||| |||| ||| || ||||| |
Sbjct 501 --TAGTGGTAAATCCAAGAAACCAAAGTTTGATCCTTTCTCACTGACTGCGGCGAGAGAG 558
Query 530 -CGCCAGAGTGGCTTTTCGATATGATGAGAAAGATGAAAGAAGCTGAAGG-CTCGGTTAG 587
|||||||||||||||| ||| |||||||||||||||| | ||| ||||| | || | |
Sbjct 559 ACGCCAGAGTGGCTTTTAGATGTGATGAGAAAGATGAAGGGAGCCGAAGGAC-CGATCAA 617
Query 588 GCTGATCTAT-AGGAAGACTTTGACCGCGAGTGACGTCAAGCCAAGCCAGAGCCGTCTCT 646
|||||||| || |||||||||||||| | |||||||||||||||| |||| |||||||
Sbjct 618 ACTGATCTACGAG-AAGACTTTGACCGCAACTGACGTCAAGCCAAGCGAGAGTCGTCTCT 676
Query 647 TAATACCTTTCAGTCAGTTACTCAGAAACGACTTCTTGACTCCTGAGGAGTCTCAAGCCA 706
|||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 677 TAATACCTTTCAATAAGTTACTCAGAAACGACTTCTTGACTCCTGAGGAGTCTCGAGCCA 736
Query 707 TAGGCATAGATAAAGAAGAAGAAGACGACA-ACAACAATAATATTGGTATGAGAACGATT 765
||| ||||||||||||||||||||| || | ||| ||| || |||||| ||| |||||||
Sbjct 737 TAGCCATAGATAAAGAAGAAGAAGAAGA-AGACACCAAGAAAATTGGTGTGAAAACGATT 795
Query 766 GTCGTGGATCAATTATCTAAAGAGTGG-GCTTTACGTTTTAAGATATGTGTGATGAAGAA 824
||||| ||||||| |||||||| ||| | |||||||||| |||||| |||||||||||
Sbjct 796 ATCGTGAATCAATTCTCTAAAGAATGGAG-TTTACGTTTTCTGATATGGGTGATGAAGAA 854
Query 825 GAAA---TCTGGAAAAAGAACCTTGAACTACGCTTTGAATCGGGGGTGGAACAACGTCGT 881
|||| |||||||| |||||||| ||||| ||||||||||||||||||| |||||
Sbjct 855 GAAAAAATCTGGAAATGGAACCTTGTACTACACTTTGAATCGGGGGTGGAATGGTGTCGT 914
Query 882 CA-GTGGTAACAAATTGAAAGAGAAAGACACGATTAGTCTTTGGACTTTCAGGTGTGGTG 940
| | |||||||| | |||| || |||| ||||||||||||||||||||||||||||
Sbjct 915 CTCG-GGTAACAAGCTCAAAGCCAACGACAATATTAGTCTTTGGACTTTCAGGTGTGGTG 973
Query 941 AAGACCGCTGCTTTGCCCTTGAGAAAGAGTAG 972
|| || ||| |||||||||||||||||||||
Sbjct 974 GAGTCCTCTGTTTTGCCCTTGAGAAAGAGTAG 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48576420149
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5