BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937776
Length=2501
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49650.1 | Symbols: | P-loop containing nucleoside triphosp... 3910 0.0
AT2G15160.1 | Symbols: | transposable element gene | chr2:6579... 180 7e-44
> AT3G49650.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:18405008-18409709
REVERSE LENGTH=3001
Length=3001
Score = 3910 bits (2117), Expect = 0.0
Identities = 2377/2502 (95%), Gaps = 20/2502 (1%)
Strand=Plus/Plus
Query 1 TTTTCGTTCTATACTGACGAAATGCCAAGCATTAGAGCTCCAGCTGCGAAGAAGACCACT 60
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 TTTTGGCTCTATACTGACGAAATGCCAAGCATTAGAGCTCCAGCTGCGAAGAAGACCACT 346
Query 61 ACACTCACGGTCGCTGTGAAATGTAGACCGTTAATGGAGAAAGAACGTGGTAGAGACATT 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 ACACTCACGGTTGCTGTGAAATGTAGACCGTTAATGGAGAAAGAACGTGGTAGAGACATT 406
Query 121 GTTCGAGTGAATAACTCTAAGGAAGTGATTGTGCTAGACCCTGACTTATCCAAAGATTAT 180
||||||||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||||
Sbjct 407 GTTCGAGTGAATAACTCTAAGGAAGTGGTTGTGTTAGACCCAGACTTATCCAAGGATTAT 466
Query 181 CTTGACCGAATTCAGAATCGGACAAAAGAGAAGAAATATTGTTTTGATCATGCATTTGGT 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 467 CTTGACCGAATTCAGAATCGGACTAAAGAGAAGAAATATTGTTTTGATCATGCTTTTGGA 526
Query 241 CCTGAGAGCACGAACAAGAATGTATATAGGAGTATGTCTTCTGTGATCTCTAGTGTTGTT 300
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 527 CCTGAGAGCACCAACAAGAATGTGTATAGGAGTATGTCTTCTGTGATCTCTAGTGTTGTT 586
Query 301 CATGGACTCAATGCTACAGTGTTTGCCTATGGTTCCACTGGAAGTGGCAAAACATATACA 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 587 CATGGACTCAATGCTACAGTTTTTGCCTATGGTTCCACTGGAAGTGGCAAAACATATACA 646
Query 361 ATGGTTGGAACACGAAGTGATCCTGGATTGATGGTTCTCAGCCTGAATACCATTTTTGAT 420
||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 647 ATGGTTGGAACTCGAAGTGATCCTGGATTGATGGTTCTCAGCTTGAATACTATTTTTGAT 706
Query 421 ATGATCAAGAGTGACAAGAGCTCAGATGAGTTTGAAGTGACTTGCTCATATCTGGAAGTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 707 ATGATCAAGAGTGACAAGAGCTCAGATGAGTTTGAAGTGACTTGCTCATATCTTGAAGTT 766
Query 481 TACAATGAAGTTATATACGATCTGCTTGAAAAATCATCTGGTCATTTGGAGCTCAGAGAG 540
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 767 TACAATGAAGTTATCTACGATCTGCTTGAAAAATCCTCTGGTCATTTAGAGCTTAGAGAG 826
Query 541 GATCCAGAGCAGGGGATAGTAGTTGCTGGCCTGCGATCAATCAAGGTCTATTCTGCTGAT 600
|||||||||||||| ||||||||||| |||||||||||||| |||||| |||||||||||
Sbjct 827 GATCCAGAGCAGGGAATAGTAGTTGCAGGCCTGCGATCAATAAAGGTCCATTCTGCTGAT 886
Query 601 CGGATTCTTGAACTGCTGAACTTAGGGAACAGTAGACGAAAAACTGAGAGTACAGAGATG 660
|||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 887 AGGATTCTTGAGCTGCTGAACTTGGGGAACAGTAGACGAAAAACTGAGAGCACAGAGATG 946
Query 661 AATGGAACGTCATCAAGATCCCATGCAGTTCTGGAGATTGCAGTAAAAAGAAGGCAAAAG 720
|||||||| |||||||| || ||||||||||| ||||||||||| |||||||||||||||
Sbjct 947 AATGGAACATCATCAAGGTCTCATGCAGTTCTAGAGATTGCAGTCAAAAGAAGGCAAAAG 1006
Query 721 AATCAAAATCAAGTCATGAGAGGGAAACTCGCCCTTGTAGATCTTGCTGGCAGTGAAAGG 780
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1007 AATCAAAATCAAGTCATGAGAGGGAAACTCGCCCTTGTAGATCTTGCTGGGAGTGAAAGA 1066
Query 781 GCTGCTGAGACGAACAACGGAGGTCAAAAACTAAGGGATGGAGCCAATATTAATCGCTCA 840
||||||||||| ||||| |||||||||||| | ||||||||||| ||||| |||||||||
Sbjct 1067 GCTGCTGAGACAAACAATGGAGGTCAAAAATTGAGGGATGGAGCAAATATCAATCGCTCA 1126
Query 841 CTCCTTGCACTAGCAAATTGCATAAATGCTTTGGGGAAGCAACACAAGAAGGGTCTTGCT 900
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1127 CTCCTTGCACTAGCAAATTGCATAAATGCTTTGGGGAAGCAACACAAAAAGGGTCTTGCT 1186
Query 901 TATGTCCCATACAGAAACAGCAAACTTACGCGGATTCTTAAAGATGGTCTGAGTGGGAAC 960
||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1187 TATGTACCATACCGAAACAGCAAACTTACGCGGATTCTCAAAGATGGTCTGAGTGGGAAC 1246
Query 961 TCCCAGACAGTGATGGTTGCAACTATATCACCTGCTGATAGTCAGTACCATCATACTGTG 1020
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1247 TCCCAGACAGTGATGGTTGCAACTATATCACCTGCTGATAGTCAGTATCATCATACTGTA 1306
Query 1021 AACACCTTGAAATATGCTGACCGGGCTAAAGAGATTAAGACACACATTCAGAAAAATATT 1080
||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 1307 AACACATTGAAATATGCTGACCGAGCAAAAGAGATTAAGACACACATCCAGAAAAATATT 1366
Query 1081 GGTACCATCGACACTCATATGTCAGACTACCAACGAATGATAGACAATCTTCAAAGTGAG 1140
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1367 GGTACCATCGATACTCATATGTCAGACTACCAACGAATGATCGACAATCTTCAAAGTGAG 1426
Query 1141 GTTTCTCAGCTGAAGAAACAGCTAGCAGAAAAGGAGTCACAGCTAAGTATCAAACCTTTT 1200
|||||||||||||||| ||| ||||| ||||| ||||| |||||||| ||||||||||||
Sbjct 1427 GTTTCTCAGCTGAAGACACAACTAGCTGAAAAAGAGTCGCAGCTAAGCATCAAACCTTTT 1486
Query 1201 GAAAGAGGTGTTGAACGTGAACTTTCGTGGTTGGATGGTTTAAGCCACCAGATCAGTGAA 1260
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1487 GAAAGAGGTGTTGAACGTGAACTTTCTTGGTTGGATGGTTTAAGCCACCAGATCAGTGAA 1546
Query 1261 AATGTTCAAGACCGTATAAACTTACAGAAGGCTTTATTTGAGCTTGAGGAAACTAACCTG 1320
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1547 AATGTTCAAGACCGTATAAACTTACAGAAGGCGTTATTTGAGCTTGAGGAAACTAACCTC 1606
Query 1321 AGAAATCGCACTGAACTTCAGCATCTCGATGATGCAATTGCGAAACAGGCGACAGAGAAA 1380
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1607 AGAAATCGCACTGAACTTCAGCATCTTGATGATGCAATTGCGAAACAGGCGACAGAGAAA 1666
Query 1381 GATGTTGTCGAAGCTTTAAGTAGCAGACGACAAGTTATACTTGATAATATCCGCGACAAT 1440
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1667 GATGTTGTCGAAGCTCTAAGTAGCAGACGACAAGTAATACTTGATAATATCCGCGACAAT 1726
Query 1441 GATGAAGCCGGTGTTAACTACCAGAGAGATATTGAAGAAAATGAAAAACATCGTTGCGAA 1500
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1727 GATGAAGCCGGTGTTAACTACCAGAGGGATATTGAAGAAAATGAAAAACATCGTTGCGAA 1786
Query 1501 CTACAGGATATGCTCAATGAAGCAATAAATAACAACGGAAACAAAACTTATCTGCATATT 1560
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1787 CTACAGGATATGCTCAATGAAGCAATAAATAACAATGGAAACAAAACGTATCTGCATATT 1846
Query 1561 CTTAATCAGTATAAGCTCCTGGGGATGGGTAATACGGAACTACAGTTTGAAATGGCAATG 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1847 CTTAATCAGTATAAGCTCCTGGGGATGGGTAATACGGAACTACAGTTTGAAATGGCAATG 1906
Query 1621 AGGGACCAAATCATTTACAACCAAAGGGAAGCCCAGAGAAACCTATGGAATTTGCTCATG 1680
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 AGGGACCAAATTATTTACAACCAAAGGGAAGCCCAGAGAAACCTATGGAATTTGCTCATG 1966
Query 1681 GGTTTAGGAGTTGAAGAGAAACAAGTGTTCGATCTCGCTGCAAAACAAGGAATCACAATC 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1967 GGTTTAGGAGTTGAAGAGAAACAAGTGTTCGATCTCGCTGCAAAACAAGGAATCACAATC 2026
Query 1741 GAAGACTGGAGTAGTATGGCGTCATTTCCAGGACTTCCTTACCGGAAACAGACACCGAGT 1800
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 2027 GAAGACTGGAGTAGTATAGCGTTGTTTCCAGGACTTCCTTACCGGAAACAGACACCGAGT 2086
Query 1801 TTCATACCTGCAAACATCCCTTTCGTGGGACACTCATATTCTAAATCCTCATGCACGTTC 1860
|||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 2087 TTCATACCAGCAAACATCCCTTTCGTGGGCCACTCATATTCTAAATCCTCCTGCACTTTC 2146
Query 1861 CAGAGCTATCAAGACCCTTCTTCGAAAGGACAACAATGGGCTCCAACTCCTACTTTATGC 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 CAGAGCTATCAAGACCCTTCTTCGAAAGGACAACAATGGGCTCCAACTCCTACTTTATGC 2206
Query 1921 AGAGAGGAACACCACAGCTCTTACTACTTCATGGGACGGGAGCCACCTGCATTTGTCAAT 1980
||||| ||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||
Sbjct 2207 AGAGAAGAACACCACAGCTCTTACTACTTCATGAGACAGGAGCCACCAGCATTTGTCAAT 2266
Query 1981 CTTAGGAAAAGCCACGATGGTTGGGTTGGTGGTAGCAGACCAGCTTCACGGATCGACACA 2040
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 2267 CTTAGGAAAAGCCACGATGGTTGGGTTGGTGGCAGCAGACCAGCTTCACGGATTGACACA 2326
Query 2041 GGAGGCAATCATCGCCGAGTCTCATATCCACAAACTGTGAACAATTCTTCTCCTCGGATG 2100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2327 GGAGGCAATCATCGCCGAGTCTCATATCCACAAACTGTGAACAATTCTTCTCCTCGGATG 2386
Query 2101 GCCCCTTCGCATTTGGGTCCGACTTTTTACCAGACTCCTCAAAGGGAAATGTTGGTCAAC 2160
||| | | | || ||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 2387 GCC--T-C--A---GG-TCCTACTTTTTACCAGACTCCTCAAAGGGAAATGTTGCTCAAC 2437
Query 2161 ACAACGAGTCCTTATAGTAGCCCGCGAGCAGGACTCATCAACGGGGCCACCACTCCGTCC 2220
|||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||
Sbjct 2438 ACAACGAGTCCTTATAGTAGTCCGCGAGTGGGACTCATCAACGGGGCCACCACCCCGTCC 2497
Query 2221 GTGCAACCTTTCTATGGAAGTCCTCGTGCCGTCACCGTGAGAAACGGTTCATACAACAAT 2280
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
Sbjct 2498 GTGCAACCTTTCTATGGAAGTCCTCGTGCCGTGACTGTGAGAAACGGTTCATACAACACT 2557
Query 2281 CCACGCGCCCCCACTGCAGTTTCATCCAATGGTGCTAGAAACCAACAACGAGTGTTTGGA 2340
|||| ||||||| ||||||||||| | || ||||| ||||||||||||||||||||||||
Sbjct 2558 CCACTCGCCCCCGCTGCAGTTTCAACTAAAGGTGCGAGAAACCAACAACGAGTGTTTGGA 2617
Query 2341 ACGAGCCCACTCGCAGGAACCAAAGGCGTCAAGAACTCTTCGTATGGACAGAACAG-CGC 2399
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 2618 ACGAGCCCACTCTCAGGAACCAAAGGCGTCAAGAACTCTTCATATGGACAGAACAGTCAC 2677
Query 2400 CACAAAGTTGTACAgaggaggaggaggaggaggCACTAAAGGGCACAATAAAGGAAACAA 2459
||||||||||||||||||||||| ||||||||| |||| ||||||||||||
Sbjct 2678 -ACAAAGTTGTACAGAGGAGGAGG---------CACTAAAGGTCACAGTAAAGGAAACAA 2727
Query 2460 AACTCAACGCCAACACCAATGACATGAGACCAAAACATGGGT 2501
|||||||||||||||||||||||||||||||||||||||||
Sbjct 2728 TACTCAACGCCAACACCAATGACATGAGACCAAAACATGGGT 2769
> AT2G15160.1 | Symbols: | transposable element gene | chr2:6579903-6581815
REVERSE LENGTH=1913
Length=1913
Score = 180 bits (97), Expect = 7e-44
Identities = 119/130 (92%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 362 TGGTTGGAACACGAAGTGATCCTGGATTGATGGTTCTCAGCCTGAATACCATTTTTGATA 421
|||||||||| || ||| ||| |||||||||||||||| || |||| ||||| |||||||
Sbjct 1598 TGGTTGGAACTCGGAGTCATCATGGATTGATGGTTCTCTGCTTGAACACCATATTTGATA 1657
Query 422 TGATCAAGAGTGACAAGAGCTCAGATGAGTTTGAAGTGACTTGCTCATATCTGGAAGTCT 481
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
Sbjct 1658 TGATCAAGAGTGACAAGAGCTTAGATGAGTTTGAAGTGACTTGCTCATATCTTGAAGTTT 1717
Query 482 ACAATGAAGT 491
||||||||||
Sbjct 1718 ACAATGAAGT 1727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124113016982
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5