BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937778
Length=3051
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49670.1 | Symbols: BAM2 | Leucine-rich receptor-like protei... 4726 0.0
AT5G65700.1 | Symbols: BAM1 | Leucine-rich receptor-like protei... 2462 0.0
AT3G49668.1 | Symbols: | other RNA | chr3:18417565-18418278 RE... 673 0.0
> AT3G49670.1 | Symbols: BAM2 | Leucine-rich receptor-like protein
kinase family protein | chr3:18417568-18421106 FORWARD LENGTH=3452
Length=3452
Score = 4726 bits (2559), Expect = 0.0
Identities = 2898/3063 (95%), Gaps = 18/3063 (1%)
Strand=Plus/Plus
Query 1 GAAAGAG-a-aaaaaaaac-aaaaaaCCATGAAGcttcttcttcttcttctcctcctcct 57
||||||| | ||||||||| |||||| ||||||||||||||||| || |||||||||||
Sbjct 146 GAAAGAGAAGAAAAAAAACAAAAAAAAAATGAAGCTTCTTCTTCTCCTCCTCCTCCTCCT 205
Query 58 cctcctccACATTTCTCATTCCTTCACCGTAGCTAAACCAATCACCGAGCTCAACGCTCT 117
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 206 TCTCCTCCACATTTCTCATTCCTTCACCGTCGCTAAACCAATCACCGAGCTCCACGCTCT 265
Query 118 TCTCTCACTCAAATCCTCCCTCACCATCGACGAACACTCACCTCT-C--ACCTCATGGAA 174
||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||
Sbjct 266 TCTCTCACTCAAATCCTCCTTCACCATCGACGAACACTCACCTCTCCTGACCTCATGGAA 325
Query 175 CCTTTCAACAACCTTCTGTTCATGGACCGGTGTCACGTGCGACGtctctcgccggcacgt 234
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 326 CCTTTCAACAACTTTCTGTTCATGGACCGGTGTCACGTGCGACGTCTCTCTCCGTCACGT 385
Query 235 gacctctctcgacctctctggtcttaacctctccggaactctctcctcCGACGTAGCTCA 294
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 386 GACCTCTCTCGACCTCTCAGGTCTTAACCTCTCCGGAACTCTCTCCTCCGACGTAGCTCA 445
Query 295 TTTACCTCT-CTTACAGAATCTATCACTCGCTGCTAATCAGATCTCAGGTCCTATTCCGC 353
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 TTTACCTCTGC-TACAGAATCTATCACTCGCTGCTAATCAGATCTCAGGTCCTATTCCGC 504
Query 354 CGGAAATCTCCAATCTTTACGAGCTTCGTCATCTCAATCTCTCCAATAATGGCTTCAACG 413
|| ||||||||||||| || ||||||||||| ||||||||||||||||||| ||||||||
Sbjct 505 CGCAAATCTCCAATCTCTATGAGCTTCGTCACCTCAATCTCTCCAATAATGTCTTCAACG 564
Query 414 GTTCATATCCCGATGAACTCTCCTCTGGATTGGTGAATCTCCGTGTTCTCGATTTGTATA 473
|||||| |||||||||||||||||||||||||||||||||||||||||| || || || |
Sbjct 565 GTTCATTTCCCGATGAACTCTCCTCTGGATTGGTGAATCTCCGTGTTCTTGACTTATACA 624
Query 474 ACAACAACTTAACCGGAGATTTACCGGTTTCAATCACTAATCTGACTCAGCTCCGGCATC 533
||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| ||||
Sbjct 625 ACAACAATTTAACCGGAGATTTACCGGTTTCACTCACTAATCTCACTCAGCTCCGTCATC 684
Query 534 TTCACCTCGGTGGGAATTACTTCTCCGGTAAAATCCCGGCGACGTACGGAACCTGGCCTG 593
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 685 TTCACCTCGGTGGGAATTACTTCTCCGGCAAAATCCCGGCGACGTACGGAACCTGGCCTG 744
Query 594 TTCTCGAGTATC-TAGCGGTTTCCGGTAACGAGCTAATCGGTAAAATCCCTCCGGAGATC 652
||||||| || | |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 745 TTCTCGAATA-CTTAGCGGTTTCCGGTAACGAGCTAACCGGTAAAATCCCTCCGGAGATC 803
Query 653 GGAAACCTAACGACTCTTCGTGAACTTTACATCGGATATTACAACGCTTTTGAAGATGGT 712
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 804 GGAAACCTAACGACTCTTCGTGAACTTTACATCGGATATTACAACGCTTTTGAAAATGGT 863
Query 713 CTTCCACCGGAGATTGGAAATTTGTCGGAGCTTGTTCGGTTCGACGCTGCTAATTGTGGT 772
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 864 CTTCCACCGGAGATTGGAAATTTATCAGAGCTTGTTCGGTTCGACGCTGCTAATTGTGGT 923
Query 773 TTAACCGGTGAGATTCCACCGGAGATTGGGAAGCTTCAGAAGCTAGATACGTTGTTTCTT 832
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 TTAACCGGAGAGATTCCACCGGAGATTGGGAAGCTTCAGAAGCTAGATACGTTGTTTCTT 983
Query 833 CAAGTAAATGCGTTTTCAGGGACATTAACTTC-AGAGCTGGGATTTATCTCAAGCTTGAA 891
|||||||| || ||| |||||||| |||| || |||||||||||| || |||||||||||
Sbjct 984 CAAGTAAACGCATTTACAGGGACAATAAC-TCAAGAGCTGGGATTGATTTCAAGCTTGAA 1042
Query 892 ATCAATGGATTTGTCTAACAATATGTTTACCGGTGAGATTCCGGCGAGTTTTTCACAGCT 951
||| |||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1043 ATCGATGGATCTGTCTAACAATATGTTTACCGGCGAGATTCCGACGAGTTTTTCACAGCT 1102
Query 952 GAAGAACTTAACG-TTGTTGAATCTCTTCAGGAACAAGCTATACGGTGGTATACCTGAGT 1010
||||||||||||| || ||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct 1103 GAAGAACTTAACGCTT-TTGAATCTCTTCAGGAATAAGCTCTACGGTGCTATACCTGAGT 1161
Query 1011 TCATCGGTGAAATGCCGGAGCTAGAAGTGTTACAGCTTTGGGAGAACAATTTCACCGGTG 1070
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 1162 TCATCGGTGAAATGCCGGAGCTTGAAGTGTTGCAGCTTTGGGAGAACAATTTCACTGGTA 1221
Query 1071 GTATTCCTCAGAAATTGGGGGAAAATGGTAGATTAGTGATTCTTGACCTCTCTTCAAACA 1130
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1222 GTATTCCTCAGAAATTGGGGGAAAATGGTAGATTAGTGATTCTTGATCTCTCTTCGAACA 1281
Query 1131 AACTCACCGGCACTTTGCCGCCGAATATGTGCTCCGGTAACCGGTTAATGACATTAATCA 1190
|||||||||| ||| |||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 1282 AACTCACCGGAACTCTGCCGCCGAATATGTGTTCTGGTAACCGGTTAATGACGTTAATCA 1341
Query 1191 CTCTCGGTAACTTCTTGTTTGGTTCAATCCCGGATTCGCTTGGCAAATGTGAGTCTCTGA 1250
|||| || |||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1342 CTCTTGGCAACTTCTTGTTTGGTTCAATACCGGATTCGCTTGGTAAATGTGAGTCTCTGA 1401
Query 1251 CCCGGATCCGAATGGGTGAGAATTTTCTCAACGGGTCGATTCCAAAGGGGCTTTTCGGGT 1310
|||||||||| |||||||||||||| || ||||||||||||||||||| ||| |||||||
Sbjct 1402 CCCGGATCCGGATGGGTGAGAATTTCCTTAACGGGTCGATTCCAAAGGAGCTCTTCGGGT 1461
Query 1311 TACCCAAATTATCTCAAGTGGAGCTTCAAGATAATTACCTCACCGGAGAGTTACCGATAA 1370
|||| |||||||||||||||||||| ||||| |||||||| ||||||||||| || ||||
Sbjct 1462 TACCTAAATTATCTCAAGTGGAGCTCCAAGACAATTACCTTACCGGAGAGTTGCCAATAA 1521
Query 1371 GCGGAGGGGGAGTCTCTGGTGACCTTGGTCAGATTAGTCTGTCTAATAACCAGCTCTCTG 1430
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1522 GCGGAGGAGGAGTCTCTGGTGACCTTGGTCAGATTAGTCTTTCTAATAACCAGCTCTCTG 1581
Query 1431 GTCCATTACCTGCTGCTATTGGAAACTTCTCCGGTGTTCAAAAACTACTCCTTGATGGTA 1490
|| |||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1582 GTTCATTACCTGCAGCTATTGGAAACTTGTCCGGTGTTCAAAAACTACTTCTTGATGGTA 1641
Query 1491 ACAAGTT-TGCTGGTCCCATTCCACCGGAGATTGGGAGGCTTCAGCAGCTATCTAAGTTG 1549
||||||| | ||||| | ||||| || |||||||||||||||||||||||||||||||||
Sbjct 1642 ACAAGTTCT-CTGGTTCGATTCCTCCCGAGATTGGGAGGCTTCAGCAGCTATCTAAGTTG 1700
Query 1550 GATTTTAGCCATAATCTGTTTTCGGGTCGGATCGCACCGGAGATCAGTCGTTGTAAGCTG 1609
||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1701 GATTTTAGCCACAATCTGTTCTCCGGTCGGATCGCACCGGAGATCAGTCGTTGTAAGCTG 1760
Query 1610 CTAACGTTTGTTGATCTGAGTCGTAATGAGCTCTCAGGTGATATTCCTAAAGAAATCACT 1669
||||||||||||||||| || ||||||||||||||||||||||||||||| ||| ||||
Sbjct 1761 CTAACGTTTGTTGATCTTAGCCGTAATGAGCTCTCAGGTGATATTCCTAATGAACTCACA 1820
Query 1670 GGTATGAGGATCTTGAATTACTTGAATCTTTCAAGAAACCATCTCGTTGGTTCGATACCT 1729
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1821 GGTATGAAGATCTTGAATTACTTGAATCTTTCAAGAAACCATCTCGTTGGTTCCATACCT 1880
Query 1730 GTGACGATAGCATCAATGCAGAGTTTGACATCAGTTGATTTCTCTTACAACAATCTCTCT 1789
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1881 GTGACGATAGCATCAATGCAGAGTTTGACATCGGTTGATTTCTCTTACAACAATCTCTCC 1940
Query 1790 GGTCTAGTTCCGAGCACTGGACAGTTTAGTTACTTCAATTACACATCGTTTTTGGGTAAT 1849
||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1941 GGTTTAGTTCCCAGCACTGGACAGTTTAGTTACTTCAATTACACATCGTTTGTGGGTAAC 2000
Query 1850 TCTGATCTTTGTGGTCCTTATTTGGGTCCTTGCGGAAAAGGAACTCACCAGCCTCATGTT 1909
||| ||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||
Sbjct 2001 TCTCATCTTTGTGGTCCGTATTTGGGTCCTTGCGGCAAAGGAACTCACCAGTCTCATGTC 2060
Query 1910 AAGCCTTTATCTGCTACTACAAAACTGTTACTCGTCCTCGGATTGCTCTTTTGTTCGATG 1969
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 2061 AAACCTTTATCTGCTACTACGAAACTGTTACTCGTCCTTGGATTGCTCTTTTGTTCGATG 2120
Query 1970 GTGTTTGCCATAGTGGCCATTACCAAAGCTCGGTCCTTGAGAAATGCGAGTGAAGCCAAG 2029
|||||||| ||||||||||| | |||||||||||||||| ||||||||||||||||||||
Sbjct 2121 GTGTTTGCTATAGTGGCCATAATCAAAGCTCGGTCCTTGCGAAATGCGAGTGAAGCCAAG 2180
Query 2030 GCATGGAGATTGACTGCTTTCCAGAGACTAGACTTCACTTGTGACGATGTCTTGGACTCT 2089
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2181 GCATGGAGATTGACTGCTTTCCAGAGGCTAGACTTCACTTGTGACGATGTCTTGGACTCT 2240
Query 2090 CTCAAGGAAGACAACATCATCGGTAAAGGCGGTGCCGGGATTGTCTACAAAGGCATTATG 2149
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 2241 CTCAAGGAAGACAACATCATCGGTAAAGGCGGTGCTGGGATTGTCTACAAAGGCACTATG 2300
Query 2150 CCTAACGGCGATCTAGTCGCGGTCAAGA-GATTGGCTACAATGTCCCATGGATCTTCCCA 2208
||||| ||||| |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 2301 CCTAAAGGCGACCTAGTCGCGGTCAA-ACGATTGGCTACAATGTCCCATGGATCTTCCCA 2359
Query 2209 TGATCACGGGTTCAACGCCGAGATTCAAACGCTAGGTAGAATCAGACACAGACACATCGT 2268
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2360 CGATCACGGGTTCAACGCCGAGATTCAGACGCTAGGTAGAATCAGACACAGACACATCGT 2419
Query 2269 GAGACTGCTCGGGTTTTGCTCCAACCACGAAACGAATCTCCTAGTGTACGAGTACATGCC 2328
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2420 GAGACTGCTCGGTTTTTGCTCCAACCACGAAACGAATCTCCTTGTGTACGAGTACATGCC 2479
Query 2329 TAATGGTAGCCTTGGAGAGGTTCTTCATGGAAAGAAAGGAGGTCATTTACATTGGGACAC 2388
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2480 TAATGGTAGCCTTGGAGAGGTTCTTCATGGAAAGAAAGGAGGTCATTTACATTGGAACAC 2539
Query 2389 ACGTTATAAGATTGCTCTTGAAGCAGCCAAGGGTCTTTGCTATCTCCACCACGATTGTTC 2448
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2540 ACGTTATAAGATAGCTCTTGAAGCAGCCAAGGGTCTTTGCTATCTCCACCATGATTGTTC 2599
Query 2449 CCCGTTGATCGTTCATAGAGATGTTAAATCCAACAATATCCTCCTCGATTCCAACTTTGA 2508
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 2600 CCCGTTGATCGTCCATAGAGATGTTAAATCCAACAACATCCTCCTCGATTCCAACTTCGA 2659
Query 2509 AGCTCATGTCGCCGATTTTGGCCTCGCCAAATTCCTCCAAGATTCTGGTACTTCTGAATG 2568
||||||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 2660 AGCTCATGTCGCCGACTTTGGTCTCGCCAAGTTCCTCCAAGATTCCGGTACTTCTGAATG 2719
Query 2569 TATGTCCGCCATCGCCGGCTCTTACGGCTACATAGCTCCAGAGTACGCGTATACATTGAA 2628
||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2720 TATGTCCGCAATTGCCGGCTCCTACGGCTACATAGCTCCAGAGTACGCGTATACATTGAA 2779
Query 2629 GGTAGATGAGAAGAGTGATGTGTATAGTTTCGGTGTTGTTCTTCTAGAACTCATCACCGG 2688
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2780 GGTAGATGAGAAGAGCGATGTGTATAGTTTCGGTGTTGTTCTTCTAGAACTCATCACCGG 2839
Query 2689 GAAAAAACCCGTCGGAGAATTTGGTGACGGCGTTGATATCGTTCAATGGGTTAGAAGCAT 2748
|||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 2840 GAAAAAACCCGTCGGAGAATTTGGCGACGGCGTTGATATTGTTCAATGGGTGAGAAGCAT 2899
Query 2749 GACGGATTCAAATAAAGATTGTGTGCTCAAAGTAATTGATCTTAGACTCTCTTCTGTACC 2808
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 2900 GACGGATTCAAATAAAGATTGTGTGCTCAAAGTAATCGATCTTAGACTCTCTTCAGTTCC 2959
Query 2809 AGTTCACGAAGTAACACACGTCTTCTACGTTGCGTTGCTCTGCGTTGAAGAACAAGCGGT 2868
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2960 AGTTCACGAGGTAACACACGTCTTCTACGTTGCGTTGCTCTGCGTTGAAGAACAAGCGGT 3019
Query 2869 GGAGAGGCCGACGATGCGTGAAGTCGTTCAGATTCTCACTGAGATCCCAAAGATCCCTCT 2928
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 3020 GGAGAGGCCGACGATGCGTGAAGTCGTTCAGATTCTCACTGAGATCCCAAAAATTCCTCT 3079
Query 2929 TTCGAAGCAGCAGGCGGCGGAATCAGACGTGTCGGAGAAAGCTCCGGCGATTAATGAATC 2988
|||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 3080 TTCGAAGCAGCAAGCGGCGGAATCAGACGTGACTGAGAAAGCTCCGGCGATTAATGAATC 3139
Query 2989 GTCGCCAGATTCAGGAAGTCCACCGGATCTTTTAAGTAATTAGACTTTCCGGCAATTGGG 3048
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3140 GTCGCCGGATTCAGGAAGTCCACCGGATCTTTTAAGTAATTAGACTTTCCGGCGATTGGG 3199
Query 3049 TTT 3051
|||
Sbjct 3200 TTT 3202
> AT5G65700.1 | Symbols: BAM1 | Leucine-rich receptor-like protein
kinase family protein | chr5:26281757-26285247 FORWARD LENGTH=3383
Length=3383
Score = 2462 bits (1333), Expect = 0.0
Identities = 2451/2983 (82%), Gaps = 108/2983 (4%)
Strand=Plus/Plus
Query 38 cttcttcttctcctcctcctcctcctccACATTTCTCATTCCTTCACCG-TAGCTAAACC 96
||| |||||||||| || | || ||||||||||||||| ||||||||| ||| |||
Sbjct 76 CTTTTTCTTCTCCTTCTTTTTCTTCTCCACATTTCTCATACCTTCACCGCAAGC-CGACC 134
Query 97 AATCACCGAGCTCAACGCTCTTCTCTCACTCAAATCCTCCCTCACCATCGAC---GA--A 151
|||| ||||| || ||||| |||||||||||| |||| |||||| || | || |
Sbjct 135 AATCTCCGAGTTCCGTGCTCTCCTCTCACTCAAAACCTCTCTCACCGGCGCCGGAGATGA 194
Query 152 C----ACTCACCTCTCACCTCATGGAACCTTTCAACAACCTTCTGTTCATGGACCGGTGT 207
| |||| |||||| | || ||||| | ||||||| ||||||| |||||| |||||
Sbjct 195 CAAAAACTCGCCTCTCTCTTCCTGGAAAGTCTCAACAAGCTTCTGTACATGGATTGGTGT 254
Query 208 CACGTGCGACGtctctcgccggcacgtgacctctctcgacctctctggtcttaacctctc 267
||||||||| || |||||||| |||||||| ||||| || ||||| ||||| ||||||||
Sbjct 255 CACGTGCGATGTATCTCGCCGTCACGTGACTTCTCTTGATCTCTCCGGTCTCAACCTCTC 314
Query 268 cggaactctctcctcC-GACGTAGCTCATTTACCTC-TCTTACAGAATCTATCACTCGCT 325
||| ||||| ||| || || || ||||||||| || |||| ||||||||||||||||||
Sbjct 315 CGGTACTCTTTCC-CCAGATGTTTCTCATTTACGTCTTCTT-CAGAATCTATCACTCGCT 372
Query 326 GCTAATC-AGATCTCAGGTCCTATTCCGCCGGAAATCTCCAATCTTTACGAG-CTTCGTC 383
| |||| | ||||| ||||| ||||||||||||||||| | |||| || | |||||||
Sbjct 373 GAAAATCTA-ATCTCCGGTCCGATTCCGCCGGAAATCTCGAGCCTTTCCG-GTCTTCGTC 430
Query 384 ATC-TCAATCTCTCCAATAATGGCTTCAACGGTTCATATCCCGATGA-ACTCTCCTCTGG 441
| | | |||||||| || |||| |||||||||||| | ||||||||| | | || |||||
Sbjct 431 A-CTTAAATCTCTCGAACAATGTCTTCAACGGTTCGTTTCCCGATGAGA-TTTCTTCTGG 488
Query 442 ATTGGTGAATCTCCGTGTTCTCGATTTGTATAACAACAACT-TAACCGGAGATTTACCGG 500
||||||||||||||| ||||| ||| | || |||||||| | ||||||||||||||||||
Sbjct 489 ATTGGTGAATCTCCGAGTTCTTGATGTCTACAACAACAA-TCTAACCGGAGATTTACCGG 547
Query 501 TTTCAATCACTAATCTGACTCAGCTCCGGCATCTTCACCTCGGTGGGAATTACTTCTCCG 560
|||| |||| |||||||||||||||||||| |||||||||||||| || |||||| | |
Sbjct 548 TTTCCGTCACCAATCTGACTCAGCTCCGGCACCTTCACCTCGGTGGTAACTACTTCGCTG 607
Query 561 GTAAA-ATCCCGGCGACGTACGGAACCTGGCCTGTTCTCGAGTATCTAGCGGTTTCCGGT 619
| ||| |||||| | ||||||||| |||||| ||| | ||||||||||||||||||||
Sbjct 608 G-AAAGATCCCGCCTTCGTACGGAAGCTGGCCAGTTATTGAGTATCTAGCGGTTTCCGGC 666
Query 620 AACGAGCTAATCGGTAAAATCCCTCCGGAGATCGGAAACCTAACGACTCTTCGTGAACTT 679
|||||||| |||| ||||||||||| ||||||||||||||||||||||| || || |||
Sbjct 667 AACGAGCTTGTCGGGAAAATCCCTCCAGAGATCGGAAACCTAACGACTCTCCGGGAGCTT 726
Query 680 TACATCGGATATTACAACGCTTTTGAAGATGGTCTTCCACCGGAGATTGGAAATTTGTCG 739
|||||||| || ||||||||||| ||||| |||||||| || ||||| |||||| | |||
Sbjct 727 TACATCGGCTACTACAACGCTTTCGAAGACGGTCTTCCTCCAGAGATCGGAAATCTATCG 786
Query 740 GAGCTTGTTC-GGTTCGACGCTGCTAATTGTGGTTTAACCGGTGAGATTCCACCGGAGAT 798
||||| | || | ||||||| |||||||| || ||||||||||||||||| ||||||||
Sbjct 787 GAGCTAG-TCAGATTCGACGGAGCTAATTGCGGATTAACCGGTGAGATTCCGCCGGAGAT 845
Query 799 TGGGAAGCTTCAGAAGCTAGATACGTTGTTTCTT-CAAGTAAATG-CGTTTTCAGGGACA 856
||||||||||||||| || |||||| | |||||| ||||| |||| | || || || ||
Sbjct 846 TGGGAAGCTTCAGAAACTCGATACGCT-TTTCTTGCAAGTGAATGTC-TTCTCCGGTCCA 903
Query 857 TTAACTTCAGAGCTGGGATTTATCTCAAGCTTGAAATCAATGGATTTGTCTAACAATATG 916
||||||| ||||| ||| | || || || ||||||||||||||||||||||| |||
Sbjct 904 TTAACTTGGGAGCTAGGAACGCTATCGAGTTTAAAATCAATGGATTTGTCTAACAACATG 963
Query 917 TTTACCGGTGAGATTCCGGCGAGTTTTTCACAGCTGAAGAACT-TAACG-TTGTTGAATC 974
|| ||||| |||||||| |||||||| || || ||||||| | | ||| || |||||||
Sbjct 964 TTCACCGGAGAGATTCCAGCGAGTTTCGCAGAGTTGAAGAA-TCTCACGCTT-TTGAATC 1021
Query 975 TCTTCAGGAACAAGCTAT-ACGGTG-GTATACCTGAGTTCATCGGTGAAATGCCGGAGCT 1032
||||| | ||||| || | |||| | | ||||| ||||||||||| || ||||||||||
Sbjct 1022 TCTTCCGTAACAAACT-TCACGGCGAG-ATACCGGAGTTCATCGGAGATTTGCCGGAGCT 1079
Query 1033 AGAAGTGTTACAGCTTTGGGAGAACAATTTCACCGGTGGTATTCCTCAGAAATTGGGGGA 1092
||||||||||||||||||||||||||||||||||| | || || |||||||| || ||
Sbjct 1080 TGAAGTGTTACAGCTTTGGGAGAACAATTTCACCGGAAGCATCCCGCAGAAATTAGGAGA 1139
Query 1093 AAATGGTAGATTAGTGAT-TCTT-GACCTCTCTTCAAACAAACTCACCGGCACTTTGCCG 1150
||| |||| | || || || | || |||||||| || || || ||||| ||||| |||
Sbjct 1140 AAACGGTAAACTAA--ATCTCGTCGATCTCTCTTCCAATAAGCTGACCGGAACTTTACCG 1197
Query 1151 CCGAATATGTGCTCCGGTAACCGGTTA-ATGACATTAATCACTCTCGGTAACTT-CTTGT 1208
||||| ||||||||||||||| |||| | || ||||||||||| || ||||| || |
Sbjct 1198 CCGAACATGTGCTCCGGTAACAAGTTAGAA-ACTTTAATCACTCTTGGAAACTTTCTC-T 1255
Query 1209 TTGGTTCAATCCCGGATTCGCTTGGCAAATGTGAGTCTCTGACCCGGATCCGAATGGGTG 1268
||||||||||||| ||||| ||||| |||||||||||| |||||||||||||||||||||
Sbjct 1256 TTGGTTCAATCCCTGATTCTCTTGGTAAATGTGAGTCTTTGACCCGGATCCGAATGGGTG 1315
Query 1269 AGAATTTTCTCAACGGGTCGATTCCAAAGGGGCTTTTCGGGTTACCCAAATTATCTCAAG 1328
||||||| || |||||||| || ||||| || || ||||| |||||||||||| ||||||
Sbjct 1316 AGAATTTCCTGAACGGGTCAATCCCAAAAGGACTATTCGGATTACCCAAATTAACTCAAG 1375
Query 1329 TGGAGCTTCAAGATAATTACCTCACCGGAGAGTTACC-GATAAGC-GGAGGGGGAGTCTC 1386
||||||| ||||||||||| ||| ||||||||||||| | | || ||||| | ||||
Sbjct 1376 TGGAGCTCCAAGATAATTATCTCTCCGGAGAGTTACCAG-TC-GCCGGAGGTG---TCTC 1430
Query 1387 TGGTGACCTTGGTCAGATTAGTCTGTCTAATAACCAGCTCTCTGGTCCATTACCTGCTGC 1446
|| | | ||||||||||| ||| | || || ||||||||||| |||||||||||| | ||
Sbjct 1431 TGTTAATCTTGGTCAGATCAGTTTATCAAACAACCAGCTCTCAGGTCCATTACCTCCGGC 1490
Query 1447 TATTGGAAACTTCTCCGGTGTTCAAAAACTACTCCTTGATGGTAACAAGTTTGCT-GGTC 1505
|| || |||||| |||| ||||| ||||| || |||||||| |||||||| | ||||
Sbjct 1491 GATCGGGAACTTCACCGGCGTTCAGAAACTTCTTCTTGATGGAAACAAGTTC-CAAGGTC 1549
Query 1506 CCATTCCACCGGAGATTGGGAGGCTTCAGCAGCTATCTAAG-TTGGATTTTAGCCATAAT 1564
| ||||| | ||| | |||| |||||||||||| || ||| ||| |||| ||||| ||
Sbjct 1550 CTATTCCTTCAGAGGTAGGGAAGCTTCAGCAGCTCTCGAAGATTG-ATTTCAGCCACAA- 1607
Query 1565 CT-GTTTTCGGGTCGGATCGCACCGGAGATCAGTCGTTGTAAGCTGCT-AACGTTTGTTG 1622
|| ||| || ||||| ||||| |||||||| |||||||| ||||| || |||||||||||
Sbjct 1608 CTTGTTCTCCGGTCGAATCGCGCCGGAGATTAGTCGTTGCAAGCT-CTTAACGTTTGTTG 1666
Query 1623 ATCTGAGTC-GTAATGAGCTCTCAGGTGATATTCCTAAA-GAAATCACTGGTATGAGGAT 1680
||||||| | | || |||||||| ||||| || || ||| || ||||||| ||||| |||
Sbjct 1667 ATCTGAG-CAGAAACGAGCTCTCCGGTGAAATCCC-AAATGAGATCACTGCTATGAAGAT 1724
Query 1681 CTTGAATTACTTGAATCTTTCAAGAAACCATCTCGTTGGTTCGATACCTG-TGACGATAG 1739
|||||||||||||| || || ||||||||||| ||||| || || |||| | | ||
Sbjct 1725 ATTGAATTACTTGAACCTGTCGAGAAACCATCTGGTTGGATCAATCCCTGGTT-CAATCT 1783
Query 1740 CATCAATGCAGAGTTTGACATCAGTTGATTTCTCTTACAACAATCTCTCTGGTCTAGTTC 1799
| ||||||||||| || ||||| ||||||||||||||||||| ||||| ||| ||||||
Sbjct 1784 CGTCAATGCAGAGCTTAACATCTCTTGATTTCTCTTACAACAACCTCTCCGGTTTAGTTC 1843
Query 1800 CGAGCACTGGACAGTTTAGTTACTTCAATTACACATCGTTTTTGGGTAATTCTGATCTTT 1859
|| | || ||||| || ||||||||||| ||||||||||| ||||||||| ||||||| |
Sbjct 1844 CGGGAACAGGACAATTCAGTTACTTCAACTACACATCGTTCTTGGGTAATCCTGATCTCT 1903
Query 1860 GTGGTCCTTAT-TTGGGTCCTTG------CGGA------AAAGGAACTCACCAGCCTCAT 1906
||||||||||| |||| |||||| ||| |||||| ||||||| ||||
Sbjct 1904 GTGGTCCTTATCTTGG-TCCTTGTAAAGACGGTGTTGCTAAAGGAGGTCACCAGAGTCAT 1962
Query 1907 -GTTAAG--CCTTTATCTGCTACTACAAAACTGTTACTCGTCCTCGGATTGCTCT-TTTG 1962
|| ||| |||||||| ||| ||| || | || || || || ||| | || | ||||
Sbjct 1963 AGTAAAGGACCTTTATCAGCTTCTATGAAGTTATTGCTTGTTCTTGGACTACT-TGTTTG 2021
Query 1963 TTCGATGGTGTTTGCCATAGTGGCCATTACCAAAGCTCGGTCCTTGAGAAATGCGAGTGA 2022
|||||| | ||| || |||| ||||| | ||||||| | || |||| ||| ||||||||
Sbjct 2022 TTCGATTGCGTTCGCGGTAGTAGCCATAATCAAAGCTAGATCATTGAAAAAGGCGAGTGA 2081
Query 2023 AGCCAAGG-CATGGAGATTGACTGCTTTCCAGAGACTAGACTTCACTTGTGACGATGTCT 2081
| || || | ||||| || || ||||||||||||||||||||||| |||||||||||||
Sbjct 2082 -GTCACGGGCTTGGAGGTTAACAGCTTTCCAGAGACTAGACTTCACGTGTGACGATGTCT 2140
Query 2082 TGGACTCTCTCAAGGAAGACAACATCATCGGTAAAGGCGGTGCCGGGATTGTCTACAAAG 2141
|||| |||||||| ||||||||||| || || ||||| || || || |||||||| ||||
Sbjct 2141 TGGATTCTCTCAAAGAAGACAACATTATAGGCAAAGGAGGAGCTGGTATTGTCTATAAAG 2200
Query 2142 GCATTATGCCTAACGGCGATCTAGTCGCGGTCAAGAGATTGGCTACAATGTCCCATGGAT 2201
|| | |||||||| || |||||||||||||| || ||| | ||| ||||||| | |||||
Sbjct 2201 GCGTAATGCCTAATGGTGATCTAGTCGCGGTTAAAAGACTCGCTGCAATGTCTCGTGGAT 2260
Query 2202 CTTCCCATGATCACGGGTTCAACGCCGAGATTCAAACGCT-AGGTAGAATCAGACACAGA 2260
|||||||||||||||| |||||||| ||||||||||| || ||| || || |||||||||
Sbjct 2261 CTTCCCATGATCACGGCTTCAACGCAGAGATTCAAAC-CTTAGGAAGGATAAGACACAGA 2319
Query 2261 CACATCGTGAGACTGCTCGGGTTTTGCTCCAACCACGAAACGAATCTCCTAGTGTACGAG 2320
||||| ||||| || ||||| |||||||| |||||||| |||||||| || || || |||
Sbjct 2320 CACATAGTGAGGCTTCTCGGATTTTGCTCAAACCACGAGACGAATCTACTTGTCTATGAG 2379
Query 2321 TACATGCCTAATGGTAGCCTTGGAGAGGTTCTTCATGGAAAGAAAGGAGGTCATTTACAT 2380
||||||||||||||||| || || ||||| ||||| || ||||||||||| || || |||
Sbjct 2380 TACATGCCTAATGGTAGTCTCGGTGAGGTGCTTCACGGTAAGAAAGGAGGACACTTGCAT 2439
Query 2381 TGGGACACACGTTATAAGATTGCTCTTGAAGCAGCCAAGGGTCTTTGCTATCTCCACCAC 2440
|||||||||||||| ||||||||||||||||| || || || || || || || || |||
Sbjct 2440 TGGGACACACGTTACAAGATTGCTCTTGAAGCTGCTAAAGGACTCTGTTACCTTCATCAC 2499
Query 2441 GATTGTTCCCCGTTGATCGTTCATAGAGATGTTAAATCCAACAATATCCTCCTCGATTCC 2500
|||||||| || ||||||||||| |||||||| ||||| ||||| |||||||| |||||
Sbjct 2500 GATTGTTCTCCATTGATCGTTCACAGAGATGTCAAATCAAACAACATCCTCCTTGATTCA 2559
Query 2501 AACTTTGAAGCTCATGTCGCCGATTTTGGCCTCGCCAAATTCCTCCAAGATTCTGGTACT 2560
||||||||||||||||| || || ||||| ||||| |||||||| |||||||| ||||||
Sbjct 2560 AACTTTGAAGCTCATGTTGCTGACTTTGGTCTCGCTAAATTCCTTCAAGATTCCGGTACT 2619
Query 2561 TCTGAATGTATGTCCGCCATCGCCGGCTCTTACGGCTACATAGCTCCAGAGTACGCGTAT 2620
|||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 2620 TCTGAATGTATGTCTGCAATCGCTGGCTCTTACGGCTACATAGCTCCAGAGTATGCGTAT 2679
Query 2621 ACATTGAAGGTAGATGAGAAGAGTGATGTGTATAGTTTCGGTGTTGTTCTTCTAGAACTC 2680
|| |||||||||||||||||||| |||||||||||||||||||| |||||| | ||||||
Sbjct 2680 ACGTTGAAGGTAGATGAGAAGAGCGATGTGTATAGTTTCGGTGTGGTTCTTTTGGAACTC 2739
Query 2681 ATCACCGGGAA-AAAACCCGTCGGAGAATTTGGTGACGGCGTTGATATCGTTCAATGGGT 2739
||||||| || |||||| |||||||||||||| ||||| || ||||| || ||||||||
Sbjct 2740 GTCACCGG-AAGAAAACCTGTCGGAGAATTTGGAGACGGTGTCGATATAGTGCAATGGGT 2798
Query 2740 TAG-AAGCATGACGGATTCAAATAAAGATT-GTGTGCTCAAAGTAATTG-ATCTTAGACT 2796
| | || ||||| ||||| || || |||| | || || |||||| ||| ||| |||||
Sbjct 2799 TCGTAAA-ATGACTGATTCGAACAAGGATTCG-GTTCTGAAAGTA-TTGGATCCGAGACT 2855
Query 2797 CTCTTCTG-TACC-AGTTCACGAAGTAACACACGTCTTCTACGTTGCGTTGCTCTGCGTT 2854
||||| | | || | |||| ||||| || ||||||||||| || ||| ||||||| ||
Sbjct 2856 TTCTTC-GATTCCGA-TTCATGAAGTGACGCACGTCTTCTATGTAGCGATGCTCTGTGTA 2913
Query 2855 GAAGAACAAGCGGTGGAGAGGCCGACGATGCGTGAAGTCGTTCAGATTCTCACTGAGATC 2914
||||||||||| || ||||||||||| ||| | ||||| |||||||||||||||||||||
Sbjct 2914 GAAGAACAAGCTGTTGAGAGGCCGACTATGAGAGAAGTTGTTCAGATTCTCACTGAGATC 2973
Query 2915 CCAAAGATCCCTCTTTCGAAGCAGCAGGCG--G-CGGAATCAG 2954
|| ||| | || | |||||| | ||| || | |||||||||
Sbjct 2974 CCGAAGTTGCCACCGTCGAAGGATCAGCCGATGACGGAATCAG 3016
> AT3G49668.1 | Symbols: | other RNA | chr3:18417565-18418278
REVERSE LENGTH=549
Length=549
Score = 673 bits (364), Expect = 0.0
Identities = 415/439 (95%), Gaps = 5/439 (1%)
Strand=Plus/Minus
Query 126 TCAAATCCTCCCTCACCATCGACGAACACTCACCTCT-C--ACCTCATGGAACCTTTCAA 182
||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 438 TCAAATCCTCCTTCACCATCGACGAACACTCACCTCTCCTGACCTCATGGAACCTTTCAA 379
Query 183 CAACCTTCTGTTCATGGACCGGTGTCACGTGCGACGtctctcgccggcacgtgacctctc 242
|||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 378 CAACTTTCTGTTCATGGACCGGTGTCACGTGCGACGTCTCTCTCCGTCACGTGACCTCTC 319
Query 243 tcgacctctctggtcttaacctctccggaactctctcctcCGACGTAGCTCATTTACCTC 302
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 TCGACCTCTCAGGTCTTAACCTCTCCGGAACTCTCTCCTCCGACGTAGCTCATTTACCTC 259
Query 303 T-CTTACAGAATCTATCACTCGCTGCTAATCAGATCTCAGGTCCTATTCCGCCGGAAATC 361
| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 258 TGC-TACAGAATCTATCACTCGCTGCTAATCAGATCTCAGGTCCTATTCCGCCGCAAATC 200
Query 362 TCCAATCTTTACGAGCTTCGTCATCTCAATCTCTCCAATAATGGCTTCAACGGTTCATAT 421
|||||||| || ||||||||||| ||||||||||||||||||| |||||||||||||| |
Sbjct 199 TCCAATCTCTATGAGCTTCGTCACCTCAATCTCTCCAATAATGTCTTCAACGGTTCATTT 140
Query 422 CCCGATGAACTCTCCTCTGGATTGGTGAATCTCCGTGTTCTCGATTTGTATAACAACAAC 481
||||||||||||||||||||||||||||||||||||||||| || || || ||||||||
Sbjct 139 CCCGATGAACTCTCCTCTGGATTGGTGAATCTCCGTGTTCTTGACTTATACAACAACAAT 80
Query 482 TTAACCGGAGATTTACCGGTTTCAATCACTAATCTGACTCAGCTCCGGCATCTTCACCTC 541
|||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct 79 TTAACCGGAGATTTACCGGTTTCACTCACTAATCTCACTCAGCTCCGTCATCTTCACCTC 20
Query 542 GGTGGGAATTACTTCTCCG 560
|||||||||||||||||||
Sbjct 19 GGTGGGAATTACTTCTCCG 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 151704835632
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5