BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937784
Length=1457
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62110.1 | Symbols: | Pectin lyase-like superfamily protein... 2401 0.0
> AT3G62110.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:22997031-23000041 REVERSE LENGTH=2142
Length=2142
Score = 2401 bits (1300), Expect = 0.0
Identities = 1408/1460 (96%), Gaps = 7/1460 (0%)
Strand=Plus/Plus
Query 1 ATCACAGATCTTCTTTTCATATGAAGAGATCTTTCCTTCTCTTGTATGTGCTCCTGGTAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 ATCACAGATCTTCTTTTCATATGAAGAGATCTTTCCTTCTCTTGTATGTGCTCCTGGTAC 484
Query 61 ATGCCTTCTATGGTGCTTTGTGTAGTGTTGGAGGAAGCCTGCATTGTGAATATTCCAATT 120
| ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 485 AGGCCTTCTATGGGGCTTGGTGTAGTGTTGGAGAAAGCCTGCATTGTGAATATTCCAATT 544
Query 121 TAGCGAGTCTTCACCGGCCTCACAGCGTATCGATTACAGAGTTTGGAGCGGTTGGAGATG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TAGCGAGTCTTCACCGGCCTCACAGCGTATCGATTACAGAGTTTGGAGCGGTTGGAGATG 604
Query 181 GTGTTACTCTAAACACTAAAGCCTTTCAGAATGCTTTGTTCTACCCCAATTCTTTCTCTG 240
|||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 605 GTGTGACTCTAAACACTAAAGCCTTTCAGAATGCTCTGTTCTACCTCAATTCTTTCTCTG 664
Query 241 ATAAAGGCGGTGCCAAGCTTTTTGTTCCCGCTGGTCAGTGGCTTACCGGGAGTTTCGACC 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 ATAAAGGCGGGGCCAAGCTTTTTGTTCCCGCTGGTCAGTGGCTTACCGGGAGTTTCGACC 724
Query 301 TTATCAGTCACCTCACCTTATGGCTAGATAGTGGTGCAACGATTCTCGGGTCAACGAGCT 360
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 725 TTATCAGTCACCTCACCTTATGGCTAGATAAAGGTGCAACGATTCTCGGGTCAACGAGCT 784
Query 361 CAGAGAATTGGCCCGTGGTTGATCCATTACCATCATATGGACGAGGAAGAGAATTGCCCG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 CAGAGAATTGGCCCGTGGTTGATCCATTACCATCATATGGACGAGGAAGAGAATTGCCCG 844
Query 421 GTAGAAGACACAGAAGTCTTATCTATGGTCAGAATCTCACAGATGTAGTCATAACAGGCG 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 845 GTAGAAGACACAGAAGTCTTATATATGGTCAGAATCTCACAGATGTAGTCATAACAGGCG 904
Query 481 AGAACGGGACAATTGATGGTCAAGGAAGTGTATGGTGGGATTGGTTTAGAAATGGAGAGC 540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 905 AGAACGGGACAATTGATGGTCAAGGAACTGTATGGTGGGATTGGTTTAGAAATGGAGAGC 964
Query 541 TAAACTATACAAGACCTCATCTTGTTGAGCTCATGAACTCTACTGGTCTGATCATCTCCA 600
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 TTAACTATACAAGACCTCATCTTGTTGAGCTCATGAACTCTACTGGTCTGATCATCTCCA 1024
Query 601 ACCTCACATTCTTGAATTCACCGTTTTGGAACATTCATCCTGTTTATTGCAGAGATGTTG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 ACCTCACATTCTTGAATTCACCGTTTTGGAACATTCATCCTGTTTATTGCAGAGATGTTG 1084
Query 661 TTGTGAAGAATCTCACAATTTTGGCTCCTCTTGAATCTCCAAATACAGATGGAGTTGATC 720
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 TTGTAAAGAATCTCACAATTTTGGCTCCTCTTGAATCTCCAAATACAGATGGAGTTGATC 1144
Query 721 CAGACTCATCAACTAATGTTTGCATAGAGGATTGTTACATAGTTACCAGAGATGATTTGG 780
|||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1145 CAGATTCATCAACTAATGTTTGCATAGAGGATTGTTACATAGTTACCGGGGATGATTTGG 1204
Query 781 TGTCGATAAAAACCGGATGGGATGAGTACGGAATATCCTACGCAAGACCGAGCTCCAAGA 840
| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1205 TATCGATAAAAAGCGGATGGGATGAGTATGGAATATCCTACGCAAGACCGAGCTCCAAGA 1264
Query 841 TCAAGATCAATCGGTTAACAGGTCAAACTACTTCAAGCTCAGGAATAGCAATCGGAAGTG 900
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1265 TCAAGATTAATCGGTTAACAGGTCAAACTACTTCAAGCTCAGGAATAGCAATAGGAAGTG 1324
Query 901 AAATGTCAGGAGGTGTGTCCGAAATATATATTAAAGACTTACATTTATTCAATTCGAATA 960
||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1325 AAATGTCGGGAGGTGTATCCGAAATATACATTAAAGACTTACATTTGTTCAATTCGAATA 1384
Query 961 CCGGAATCAGAATCAAGACTTCTCCGGGAAGAGGCGGGTATGTTAGAAACGTTCACATCT 1020
| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1385 CTGGAATCAGAATCAAGACTTCTGCTGGAAGAGGCGGGTATGTTAGAAACGTTCACATCT 1444
Query 1021 TGAACGTGAAGCTCGATAATGTAAAGAAAGCGATTAGATTCACGGGTAAGTACGGTGAAC 1080
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1445 TGAACGTGAAGCTCGATAATGTAAAGAAAGCGATTAGGTTCACCGGTAAGTACGGTGAAC 1504
Query 1081 ATCCTGAT-A-AAATTTTTGATCCCAAAGCACTCCCAGCTATCGAGAAAATCACCTTTGA 1138
|||||||| | |||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1505 ATCCTGATGAGAAATAC--GATCCCAAAGCACTCCCAGCTATAGAGAAAATCACCTTTGA 1562
Query 1139 GAATGTAAATGGTGATGGAATCGGTGTTGCGGGTCTACTTGAAGGTATAGAAGGAGATGA 1198
|||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1563 GAATGTAAATGGCGATGGAATAGGTGTTGCGGGTCTTCTTGAAGGTATAGAAGGAGATGT 1622
Query 1199 GTTTAGGAATATATGTTTCCTTAACGTTACTCTTAGAGTGAAGAAGAATTCGAAGAAATC 1258
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1623 GTTTAAGAATATATGTTTCCTTAATGTTACTCTTAGAGTGAAGAAGAATTCGAAGAAATC 1682
Query 1259 TCCATGGGAATGCTCAAATGTTAGAGGTTATTCACAGTGGGTTTCGCCAGGAA-TTACTT 1317
|||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||
Sbjct 1683 ACCATGGGAATGCTCGAATGTGAGAGGTTATTCACAGTGGGTTTCGCC-GGAAATTACTT 1741
Query 1318 GTGATTCTTTGAAAGAGAGTATATTCCCGGAACATCGATCTGATTGTTTCGGGTTATCGG 1377
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1742 GTGATTCTTTGAAAGAGAGTATATTCCCGGAACATGGATCTGATTGTTTCGGGTTATCGG 1801
Query 1378 AAAATAATCTGGAGATATCAAGTGGTTTAAGTAGATCACCATGGTTACTTTCTTGGTGAA 1437
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1802 AAAATAATATGGAGATATCAAGTGGTTTAAGTAGATCACCATGGTTACTTTCTTGGT-AA 1860
Query 1438 GTTACTGTGAAGTTTTGAAC 1457
||||||||||||||||||||
Sbjct 1861 GTTACTGTGAAGTTTTGAAC 1880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71836979895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5