BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937789

Length=523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G62060.1 | Symbols:  | Pectinacetylesterase family protein |...   501    3e-141


> AT3G62060.1 | Symbols:  | Pectinacetylesterase family protein 
| chr3:22979955-22982944 FORWARD LENGTH=1638
Length=1638

 Score =  501 bits (271),  Expect = 3e-141
 Identities = 281/286 (98%), Gaps = 0/286 (0%)
 Strand=Plus/Plus

Query  209  CTGACTTCTTTAATTGGAACAGGATCAAGTTGCGTTACTGCGATGGTGCATCTTTCTCTG  268
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  584  CTGACTTCTTTAATTGGAACAGGATCAAGTTGCGTTACTGCGATGGTGCGTCTTTCTCTG  643

Query  269  GTGATAGTCAGGACGAGAGTTCGCAACTTTTCTATCGAGGACAACGAATTTGGCAAGTGG  328
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  644  GTGATAGTCAGGACGAGAGTTCGCAACTTTTCTATCGAGGACAACGAATCTGGCAAGTGG  703

Query  329  CTATGGAAGAATTCCTGTCTTTAGGCATGAAGCAAGCAAACCAGGCTCTGCTTTCTGGAT  388
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  704  CTATGGAAGAATTCCTGTCTTTAGGCATGAAGCAAGCAAACCAGGCTCTGCTCTCTGGAT  763

Query  389  GTTCAGCTGGAGGATTAGCTTCCATCTTGCACTGTGATGAGTTCAGGGAACTATTACCTA  448
            |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct  764  GTTCAGCTGGAGGATTAGCTTCTATTTTGCACTGTGATGAGTTCAGGGAACTATTACCTA  823

Query  449  GTTCCACGAAAGTAAAATGCTTAAGTGATGCTGGAATGTTTCTGGA  494
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  824  GTTCCACGAAAGTAAAATGCTTAAGTGATGCTGGAATGTTTCTGGA  869


 Score =  281 bits (152),  Expect = 4e-75
 Identities = 204/226 (90%), Gaps = 15/226 (7%)
 Strand=Plus/Plus

Query  1    GGGACTTGGGCGGAGGAGGAGATGAGGAGCGTGTTGGTGTGGATTGCGGTGGTCGTGTGC  60
            |||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct  148  GGGACTTGGGCGGAAGAGGAGATGAGGAGCTTGTTGTTGTGGATTGCGGTGGTCGTGTGC  207

Query  61   TTGCTATGTTCAGTCGCGGCGGTGGTTCAAAGCGGATCTAGCGATGGATTTGGGAAACCC  120
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  208  TTGCTATGTTCAGTCGCGGCGGTGGTTCAAAGCGGATCTAGCGACGGATTTGGGAAACCC  267

Query  121  AGAGATACTGAGACTG--A----------G---TATAAATTGATGGCGCATTCGGTTCCA  165
            ||||||||||||||||  |          |   |||||||||||||||| ||||||||||
Sbjct  268  AGAGATACTGAGACTGCGATATCTTTTCTGGAGTATAAATTGATGGCGCCTTCGGTTCCA  327

Query  166  ATGGTACCTCTCACCTTGATTCAGGGAGCTGACTCTAAAGGAGCTG  211
            ||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct  328  ATGATACCTCTCACCTTGATTCACGGAGCTGACTCTAAAGGAGCTG  373



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25016605206


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5