BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937795
Length=2207
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49710.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3502 0.0
AT3G49720.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 52.8 1e-05
> AT3G49710.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:18437845-18440010 FORWARD LENGTH=2166
Length=2166
Score = 3502 bits (1896), Expect = 0.0
Identities = 2079/2169 (96%), Gaps = 6/2169 (0%)
Strand=Plus/Plus
Query 22 ATGAACCAGACGCAATGGAAGTTCAAATCTTTTCGAGACCTTCTACTGAAATGC-GTAGC 80
||||| ||||||| ||||||||||||| |||||||||||||||||||||||| | |||||
Sbjct 1 ATGAATCAGACGCCATGGAAGTTCAAAACTTTTCGAGACCTTCTACTGAAAT-CTGTAGC 59
Query 81 GGAGAGAGATCTCTTCACAGGGAAATCACTTCACGCGCTCTACGTGAAATCCATTGTAGC 140
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GGAGAGAGATCTCTTCACTGGGAAATCACTTCACGCGCTCTACGTGAAATCCATTGTAGC 119
Query 141 TTCTTCTACTTATCTCTCAAACCACTTCGTGAACCTTTACTCCAAGTGTGGTTGTCTTTC 200
||| || |||||||||||||| ||||||||||| || |||||||| |||||| | |||||
Sbjct 120 TTCGTCCACTTATCTCTCAAATCACTTCGTGAATCTCTACTCCAAATGTGGTCGCCTTTC 179
Query 201 CTACGCACGAGCCGCGTTCGACTCCACGGAAGAACCCAATGTCTTCTCTTACAATGTAAT 260
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTACGCACGAGCCGCGTTCTACTCCACGGAAGAACCCAATGTCTTCTCTTACAATGTAAT 239
Query 261 TGTCAAAGCTTATGCGAAAGATTCGAAAATACATATTGCACGTCAGTTGTTCGACGAAAA 320
|||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 240 TGTCAAAGCTTACGCGAAAGATTCGAAAATCCATATTGCACGCCAGTTGTTCGACGAAAT 299
Query 321 TCCGCAACCAGACACTGTTTCTTACAATACTCTTATATCGGGGTACGCTGATGCTAGAGA 380
||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 300 TCCCCAACCAGACACTGTCTCTTACAATACTCTTATCTCGGGGTACGCTGATGCTAGAGA 359
Query 381 AACTGTTGCCGCGATGGTTCTGTTTAAGAGAATGAGAGAATTGGGATTTGAGGTTGATGG 440
|||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 360 AACTTTTGCCGCAATGGTTCTGTTTAAGAGAATGAGAAAATTGGGATTTGAGGTTGATGG 419
Query 441 GTTTACGTTGTCAGGGTTGATAGCAGCTTGTTGTGACCGTGTCGATTTGATAAAGCAGCT 500
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 GTTTACGTTATCAGGGTTGATAGCAGCTTGTTGTGACCGTGTTGATTTGATAAAGCAGCT 479
Query 501 TCATTGTTTCGCTGTCTCGGGAGGGTTTGATTCATACTCGTCTGTGAATAATGCGTTTGT 560
||| |||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 480 TCACTGTTTCTCTGTCTCGGGAGGGTTTGATTCGTACTCGTCTGTGAATAACGCGTTTGT 539
Query 561 TACGTATTACAGTAAAGGTGGGCTTTTGAGAGAGGCGGTATCGGTGTTCTATGGGATGGA 620
||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 TACGTATTATAGTAAAGGCGGGCTTTTGAGAGAGGCGGTATCGGTGTTTTATGGGATGGA 599
Query 621 TGGATTAAGAGATGAAGTTTCGTGGAATTCGATGATTGTGGCTTATGGGCAGCATAAGGA 680
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 TGAATTAAGAGATGAAGTTTCGTGGAATTCGATGATTGTGGCTTATGGGCAGCACAAGGA 659
Query 681 AGGAGCTAAGGCTTTAGCTTTGTATAAAGAAATGATTTTTAAAGGATTTAAGATTGATAT 740
|||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 660 AGGAGCAAAGGCATTAGCTTTGTATAAAGAAATGATCTTTAAAGGATTCAAGATTGATAT 719
Query 741 GTTTACATTGGCAAGTGTTTTAAATGCTCTCACTAGCTTGGATCATTTGATCGGTGGCCG 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTTTACATTGGCAAGTGTTTTAAATGCTCTCACTAGCTTGGATCATTTGATCGGTGGCCG 779
Query 801 TCAGTTCCACGGTAAGCTGATCAAGGCTGGATTTCACCAGAATTCACATGTGGGAAGTGG 860
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 780 TCAGTTCCACGGTAAGCTGATCAAGGCTGGATTTCACCAGAACTCACATGTGGGAAGTGG 839
Query 861 TTTGATTGATTTTTACTCAAAATGTGGGGGTCGTGATGGTATGTCTGATAGTGAGAAGGT 920
|||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||
Sbjct 840 TTTGATTGATTTTTACTCAAAATGCGGGGGTTGTGATGGTATGTATGATAGTGAGAAGGT 899
Query 921 GTTTCAAGAGATTCTGTCGCCGGATTTGGTTCTTTGGAATACGATGATTTCTGGATATTC 980
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 900 ATTTCAAGAGATTCTATCGCCGGATTTGGTTGTTTGGAATACGATGATTTCTGGATATTC 959
Query 981 AATGAACGAGGAACACTCTGAAGAAGCTGTGAAGAGTTTTAGACAGATGCAACGAATTGG 1040
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 960 AATGAACGAGGAACTCTCTGAAGAAGCTGTGAAGAGTTTTAGACAGATGCAACGTATTGG 1019
Query 1041 ACACAGACCTGATGATTGCAGTTTTGTCTGTGTCACAAGCGCTTGCTCGAATCTCTCCTC 1100
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACATAGACCTGATGATTGCAGTTTTGTCTGTGTCACAAGCGCTTGCTCGAATCTCTCCTC 1079
Query 1101 TCCTTCTCAGGGCAAGCAGATTCATGGCTTGGCTATCAAATC-CAACATTCCTTCGAATA 1159
|||||||||| |||||||||||||||||||||| |||||||| | |||| ||||||||||
Sbjct 1080 TCCTTCTCAGTGCAAGCAGATTCATGGCTTGGCGATCAAATCTC-ACATCCCTTCGAATA 1138
Query 1160 GAATCTCTGTGAACAACGCATTGATTTCGTTGTATTACAAAAGCGGAAACCTGCTAGACG 1219
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1139 GAATCTCTGTGAACAACGCGTTGATTTCGTTGTATTACAAAAGCGGAAACCTGCAAGACG 1198
Query 1220 CAAGGCGGGTATTTGATCGAATGCCAGAGCTTAATGCTGTATCTTTCAATTGTATGATTA 1279
||||| ||||||||||| ||||||| || |||||||| |||||||||||||||||||| |
Sbjct 1199 CAAGGTGGGTATTTGATAGAATGCCGGAACTTAATGCGGTATCTTTCAATTGTATGATCA 1258
Query 1280 AAGGTTATGCGCAGCACGGGCATGGAACAGAAGCTTTGCGTTTATACCAACGGATGCTGG 1339
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1259 AAGGTTATGCGCAGCACGGGCATGGAACAGAAGCTTTGCTTTTATACCAACGGATGCTGG 1318
Query 1340 ACTCGGGTATTGCGCCAAACAATATAACCTTTGTAGCCATTCTTTCTGCTTGTGCACACT 1399
|||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| ||||
Sbjct 1319 ACTCGGGTATTGCGCCTAACAAGATAACCTTTGTAGCCGTTCTTTCTGCTTGTGCGCACT 1378
Query 1400 GTGGTAAGGTCGACGAGGGTCAGAAGTACTTCAACACTATGAAGGAGACGTTCAAGATCG 1459
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1379 GTGGTAAGGTCGACGAGGGTCAGGAGTACTTCAACACCATGAAGGAGACGTTCAAGATCG 1438
Query 1460 AACCAGAGGCAGAGCACTATTCTTGTATGATTGATCTTTTAGGCCGAGCAGGGAAGCTAG 1519
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 AACCAGAGGCTGAGCACTATTCTTGTATGATTGATCTTTTAGGCCGAGCAGGGAAGCTAG 1498
Query 1520 AAGAGGCAGAGAGATTCATAGATGCAATGCCTTATAAGCCAGGCTCTGTTGCTTGGGCTG 1579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 AAGAGGCAGAGAGATTCATAGATGCAATGCCTTATAAGCCAGGCTCTGTTGCTTGGGCTG 1558
Query 1580 CGTTGCTCGGGGCCTGTAGGAAACACAAAAACATGGCTCTTGCAGAGAGAGCAGCTAAGG 1639
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1559 CTTTGCTCGGGGCTTGTAGGAAACACAAAAACATGGCTCTTGCAGAGAGAGCAGCTAATG 1618
Query 1640 AGCTTATGGTGATGCAACCCTTAGCTGCCACGCCGTATGTGATGCTAGCAAACATGTATG 1699
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1619 AGCTTATGGTGATGCAACCATTAGCTGCCACGCCATATGTGATGCTAGCAAACATGTATG 1678
Query 1700 CAGATG-CAGGGAAATGGGAAGAGATGGCCTCAGTGAGGAAATCAATGAGGGGGAAAAGG 1758
|||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1679 CAGATGCCA-GGAAATGGGAAGAGATGGCCTCGGTGAGGAAATCAATGAGGGGGAAAAGG 1737
Query 1759 ATAAGGAAGAAACCGGGATGTAGTTGGATCGAAGTGAAGAAGAAAAAGCATGTATTCGTC 1818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 ATAAGGAAGAAACCGGGATGTAGTTGGATCGAAGTGAAGAAGAAAAAGCATGTATTCGTC 1797
Query 1819 GCAGAAGATTGGTCTCATCCGATGATACGGGAAGTGAATGAATATCTAGAGGAGATGATG 1878
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1798 GCAGAAGATTGGTCTCATCCGATGATACGAGAAGTGAATGAATATCTAGAGGAGATGATG 1857
Query 1879 AAGAAGATGAAGAAAGCTGGGTATGTGATGGATAAGAAATGGGCAATGGTAAAAGAGGAT 1938
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 AAGAAGATGAAGAAAGTTGGGTATGTGATGGATAAGAAATGGGCAATGGTAAAAGAGGAT 1917
Query 1939 GAAGCAGGCGAAGGAGAAGAAGAGATGCGGTTAGGACATCATAGCGAGAAGCTAGCGGTG 1998
|||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1918 GAAGCAGGCGAAGGGGACGAAGAAATGCGGTTAGGACATCACAGCGAGAAGCTAGCGGTG 1977
Query 1999 GCCTTTGGGTTGATGTCGACAAGAGATGGAGAAGAATTAGTTGTGGTGAAGAATTTGAGG 2058
|| ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 1978 GCTTTTGGGTTGATGTCGACTAGAGATGGAGAAGAATTAGTTGTAGTTAAGAATTTGAGG 2037
Query 2059 ATATGTGGGGATTGTCACAATGCTATCAAGTTTATGTCTGCAGTTGCAGGTAGAGAGATC 2118
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2038 ATATGTGGGGATTGTCACAATGCTATCAAGTTTATGTCTGCGGTTGCAGGTAGAGAGATC 2097
Query 2119 ATTGTAAGAGATAACCTTCGGTTTCATTGCTTCAAAGATGGCAAGTGTTCATGTGGGGAT 2178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2098 ATTGTAAGAGATAACCTTCGGTTTCATTGCTTCAAAGATGGCAAGTGTTCATGTGGGGAT 2157
Query 2179 TATTGGTGA 2187
|||||||||
Sbjct 2158 TATTGGTGA 2166
> AT3G49720.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus,
plasma membrane, membrane; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G65810.1);
Has 64 Blast hits to 64 proteins in 11 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:18440003-18442198
REVERSE LENGTH=1139
Length=1139
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Minus
Query 2180 ATTGGTGATAATAATTATGATTTAATTG 2207
||||||||||||||||||||||||||||
Sbjct 1139 ATTGGTGATAATAATTATGATTTAATTG 1112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109487388645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5