BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937795 Length=2207 Score E Sequences producing significant alignments: (Bits) Value AT3G49710.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3502 0.0 AT3G49720.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 52.8 1e-05 > AT3G49710.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:18437845-18440010 FORWARD LENGTH=2166 Length=2166 Score = 3502 bits (1896), Expect = 0.0 Identities = 2079/2169 (96%), Gaps = 6/2169 (0%) Strand=Plus/Plus Query 22 ATGAACCAGACGCAATGGAAGTTCAAATCTTTTCGAGACCTTCTACTGAAATGC-GTAGC 80 ||||| ||||||| ||||||||||||| |||||||||||||||||||||||| | ||||| Sbjct 1 ATGAATCAGACGCCATGGAAGTTCAAAACTTTTCGAGACCTTCTACTGAAAT-CTGTAGC 59 Query 81 GGAGAGAGATCTCTTCACAGGGAAATCACTTCACGCGCTCTACGTGAAATCCATTGTAGC 140 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 60 GGAGAGAGATCTCTTCACTGGGAAATCACTTCACGCGCTCTACGTGAAATCCATTGTAGC 119 Query 141 TTCTTCTACTTATCTCTCAAACCACTTCGTGAACCTTTACTCCAAGTGTGGTTGTCTTTC 200 ||| || |||||||||||||| ||||||||||| || |||||||| |||||| | ||||| Sbjct 120 TTCGTCCACTTATCTCTCAAATCACTTCGTGAATCTCTACTCCAAATGTGGTCGCCTTTC 179 Query 201 CTACGCACGAGCCGCGTTCGACTCCACGGAAGAACCCAATGTCTTCTCTTACAATGTAAT 260 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 180 CTACGCACGAGCCGCGTTCTACTCCACGGAAGAACCCAATGTCTTCTCTTACAATGTAAT 239 Query 261 TGTCAAAGCTTATGCGAAAGATTCGAAAATACATATTGCACGTCAGTTGTTCGACGAAAA 320 |||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 240 TGTCAAAGCTTACGCGAAAGATTCGAAAATCCATATTGCACGCCAGTTGTTCGACGAAAT 299 Query 321 TCCGCAACCAGACACTGTTTCTTACAATACTCTTATATCGGGGTACGCTGATGCTAGAGA 380 ||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 300 TCCCCAACCAGACACTGTCTCTTACAATACTCTTATCTCGGGGTACGCTGATGCTAGAGA 359 Query 381 AACTGTTGCCGCGATGGTTCTGTTTAAGAGAATGAGAGAATTGGGATTTGAGGTTGATGG 440 |||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 360 AACTTTTGCCGCAATGGTTCTGTTTAAGAGAATGAGAAAATTGGGATTTGAGGTTGATGG 419 Query 441 GTTTACGTTGTCAGGGTTGATAGCAGCTTGTTGTGACCGTGTCGATTTGATAAAGCAGCT 500 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 420 GTTTACGTTATCAGGGTTGATAGCAGCTTGTTGTGACCGTGTTGATTTGATAAAGCAGCT 479 Query 501 TCATTGTTTCGCTGTCTCGGGAGGGTTTGATTCATACTCGTCTGTGAATAATGCGTTTGT 560 ||| |||||| |||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 480 TCACTGTTTCTCTGTCTCGGGAGGGTTTGATTCGTACTCGTCTGTGAATAACGCGTTTGT 539 Query 561 TACGTATTACAGTAAAGGTGGGCTTTTGAGAGAGGCGGTATCGGTGTTCTATGGGATGGA 620 ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 540 TACGTATTATAGTAAAGGCGGGCTTTTGAGAGAGGCGGTATCGGTGTTTTATGGGATGGA 599 Query 621 TGGATTAAGAGATGAAGTTTCGTGGAATTCGATGATTGTGGCTTATGGGCAGCATAAGGA 680 || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 600 TGAATTAAGAGATGAAGTTTCGTGGAATTCGATGATTGTGGCTTATGGGCAGCACAAGGA 659 Query 681 AGGAGCTAAGGCTTTAGCTTTGTATAAAGAAATGATTTTTAAAGGATTTAAGATTGATAT 740 |||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 660 AGGAGCAAAGGCATTAGCTTTGTATAAAGAAATGATCTTTAAAGGATTCAAGATTGATAT 719 Query 741 GTTTACATTGGCAAGTGTTTTAAATGCTCTCACTAGCTTGGATCATTTGATCGGTGGCCG 800 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 GTTTACATTGGCAAGTGTTTTAAATGCTCTCACTAGCTTGGATCATTTGATCGGTGGCCG 779 Query 801 TCAGTTCCACGGTAAGCTGATCAAGGCTGGATTTCACCAGAATTCACATGTGGGAAGTGG 860 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 780 TCAGTTCCACGGTAAGCTGATCAAGGCTGGATTTCACCAGAACTCACATGTGGGAAGTGG 839 Query 861 TTTGATTGATTTTTACTCAAAATGTGGGGGTCGTGATGGTATGTCTGATAGTGAGAAGGT 920 |||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||| Sbjct 840 TTTGATTGATTTTTACTCAAAATGCGGGGGTTGTGATGGTATGTATGATAGTGAGAAGGT 899 Query 921 GTTTCAAGAGATTCTGTCGCCGGATTTGGTTCTTTGGAATACGATGATTTCTGGATATTC 980 |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 900 ATTTCAAGAGATTCTATCGCCGGATTTGGTTGTTTGGAATACGATGATTTCTGGATATTC 959 Query 981 AATGAACGAGGAACACTCTGAAGAAGCTGTGAAGAGTTTTAGACAGATGCAACGAATTGG 1040 |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 960 AATGAACGAGGAACTCTCTGAAGAAGCTGTGAAGAGTTTTAGACAGATGCAACGTATTGG 1019 Query 1041 ACACAGACCTGATGATTGCAGTTTTGTCTGTGTCACAAGCGCTTGCTCGAATCTCTCCTC 1100 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 ACATAGACCTGATGATTGCAGTTTTGTCTGTGTCACAAGCGCTTGCTCGAATCTCTCCTC 1079 Query 1101 TCCTTCTCAGGGCAAGCAGATTCATGGCTTGGCTATCAAATC-CAACATTCCTTCGAATA 1159 |||||||||| |||||||||||||||||||||| |||||||| | |||| |||||||||| Sbjct 1080 TCCTTCTCAGTGCAAGCAGATTCATGGCTTGGCGATCAAATCTC-ACATCCCTTCGAATA 1138 Query 1160 GAATCTCTGTGAACAACGCATTGATTTCGTTGTATTACAAAAGCGGAAACCTGCTAGACG 1219 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 1139 GAATCTCTGTGAACAACGCGTTGATTTCGTTGTATTACAAAAGCGGAAACCTGCAAGACG 1198 Query 1220 CAAGGCGGGTATTTGATCGAATGCCAGAGCTTAATGCTGTATCTTTCAATTGTATGATTA 1279 ||||| ||||||||||| ||||||| || |||||||| |||||||||||||||||||| | Sbjct 1199 CAAGGTGGGTATTTGATAGAATGCCGGAACTTAATGCGGTATCTTTCAATTGTATGATCA 1258 Query 1280 AAGGTTATGCGCAGCACGGGCATGGAACAGAAGCTTTGCGTTTATACCAACGGATGCTGG 1339 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1259 AAGGTTATGCGCAGCACGGGCATGGAACAGAAGCTTTGCTTTTATACCAACGGATGCTGG 1318 Query 1340 ACTCGGGTATTGCGCCAAACAATATAACCTTTGTAGCCATTCTTTCTGCTTGTGCACACT 1399 |||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| |||| Sbjct 1319 ACTCGGGTATTGCGCCTAACAAGATAACCTTTGTAGCCGTTCTTTCTGCTTGTGCGCACT 1378 Query 1400 GTGGTAAGGTCGACGAGGGTCAGAAGTACTTCAACACTATGAAGGAGACGTTCAAGATCG 1459 ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 1379 GTGGTAAGGTCGACGAGGGTCAGGAGTACTTCAACACCATGAAGGAGACGTTCAAGATCG 1438 Query 1460 AACCAGAGGCAGAGCACTATTCTTGTATGATTGATCTTTTAGGCCGAGCAGGGAAGCTAG 1519 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1439 AACCAGAGGCTGAGCACTATTCTTGTATGATTGATCTTTTAGGCCGAGCAGGGAAGCTAG 1498 Query 1520 AAGAGGCAGAGAGATTCATAGATGCAATGCCTTATAAGCCAGGCTCTGTTGCTTGGGCTG 1579 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1499 AAGAGGCAGAGAGATTCATAGATGCAATGCCTTATAAGCCAGGCTCTGTTGCTTGGGCTG 1558 Query 1580 CGTTGCTCGGGGCCTGTAGGAAACACAAAAACATGGCTCTTGCAGAGAGAGCAGCTAAGG 1639 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1559 CTTTGCTCGGGGCTTGTAGGAAACACAAAAACATGGCTCTTGCAGAGAGAGCAGCTAATG 1618 Query 1640 AGCTTATGGTGATGCAACCCTTAGCTGCCACGCCGTATGTGATGCTAGCAAACATGTATG 1699 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 1619 AGCTTATGGTGATGCAACCATTAGCTGCCACGCCATATGTGATGCTAGCAAACATGTATG 1678 Query 1700 CAGATG-CAGGGAAATGGGAAGAGATGGCCTCAGTGAGGAAATCAATGAGGGGGAAAAGG 1758 |||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1679 CAGATGCCA-GGAAATGGGAAGAGATGGCCTCGGTGAGGAAATCAATGAGGGGGAAAAGG 1737 Query 1759 ATAAGGAAGAAACCGGGATGTAGTTGGATCGAAGTGAAGAAGAAAAAGCATGTATTCGTC 1818 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1738 ATAAGGAAGAAACCGGGATGTAGTTGGATCGAAGTGAAGAAGAAAAAGCATGTATTCGTC 1797 Query 1819 GCAGAAGATTGGTCTCATCCGATGATACGGGAAGTGAATGAATATCTAGAGGAGATGATG 1878 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1798 GCAGAAGATTGGTCTCATCCGATGATACGAGAAGTGAATGAATATCTAGAGGAGATGATG 1857 Query 1879 AAGAAGATGAAGAAAGCTGGGTATGTGATGGATAAGAAATGGGCAATGGTAAAAGAGGAT 1938 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1858 AAGAAGATGAAGAAAGTTGGGTATGTGATGGATAAGAAATGGGCAATGGTAAAAGAGGAT 1917 Query 1939 GAAGCAGGCGAAGGAGAAGAAGAGATGCGGTTAGGACATCATAGCGAGAAGCTAGCGGTG 1998 |||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||| Sbjct 1918 GAAGCAGGCGAAGGGGACGAAGAAATGCGGTTAGGACATCACAGCGAGAAGCTAGCGGTG 1977 Query 1999 GCCTTTGGGTTGATGTCGACAAGAGATGGAGAAGAATTAGTTGTGGTGAAGAATTTGAGG 2058 || ||||||||||||||||| ||||||||||||||||||||||| || |||||||||||| Sbjct 1978 GCTTTTGGGTTGATGTCGACTAGAGATGGAGAAGAATTAGTTGTAGTTAAGAATTTGAGG 2037 Query 2059 ATATGTGGGGATTGTCACAATGCTATCAAGTTTATGTCTGCAGTTGCAGGTAGAGAGATC 2118 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2038 ATATGTGGGGATTGTCACAATGCTATCAAGTTTATGTCTGCGGTTGCAGGTAGAGAGATC 2097 Query 2119 ATTGTAAGAGATAACCTTCGGTTTCATTGCTTCAAAGATGGCAAGTGTTCATGTGGGGAT 2178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2098 ATTGTAAGAGATAACCTTCGGTTTCATTGCTTCAAAGATGGCAAGTGTTCATGTGGGGAT 2157 Query 2179 TATTGGTGA 2187 ||||||||| Sbjct 2158 TATTGGTGA 2166 > AT3G49720.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:18440003-18442198 REVERSE LENGTH=1139 Length=1139 Score = 52.8 bits (28), Expect = 1e-05 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 2180 ATTGGTGATAATAATTATGATTTAATTG 2207 |||||||||||||||||||||||||||| Sbjct 1139 ATTGGTGATAATAATTATGATTTAATTG 1112 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 109487388645 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5