BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937802
Length=587
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49760.1 | Symbols: AtbZIP5, bZIP5 | basic leucine-zipper 5 ... 747 0.0
> AT3G49760.1 | Symbols: AtbZIP5, bZIP5 | basic leucine-zipper
5 | chr3:18455347-18456125 REVERSE LENGTH=779
Length=779
Score = 747 bits (404), Expect = 0.0
Identities = 542/605 (90%), Gaps = 24/605 (4%)
Strand=Plus/Plus
Query 1 CTCTCTT-TTTTCCGGTTAAGCACCATGATGTCTACTATTTCTCCAGTTTTCTCAACCG- 58
|||| || |||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 62 CTCTTTTATTTTCCGGTTAAGCACCATGATGTCTACTATTTCCCCGGTTTTCTCAACCGA 121
Query 59 A--------ATTAACCTCTG---TCCCAGCTTTCGAAACCGGTTCCACTCCATGGGACAT 107
| ||||||||||| |||||||||| |||||| ||| |||||||||||||||
Sbjct 122 ACCGGGTCTATTAACCTCTGTCCTCCCAGCTTTTGAAACCAGTTTCACTCCATGGGACAT 181
Query 108 TTCACACCTCTTCTCGGTCTTCGATTCGTCAATGGAT-CAAATACCGGTTTCGGCCCATG 166
||||||||||||||||||||||||||| | ||| ||| |||| |||||||||| ||||||
Sbjct 182 TTCACACCTCTTCTCGGTCTTCGATTCATTAATCGATCCAAA-ACCGGTTTCGACCCATG 240
Query 167 ACTATGGTTCAGTAAACCAGACCAGTACAGACGTTG-CTCTAACCGA-AAGTACCGATGA 224
||||||||||||||||||||| | || ||||| || ||| ||||| || |||||| ||
Sbjct 241 ACTATGGTTCAGTAAACCAGATCGGTTCAGAC-ATGTCTCCGACCGACAA-TACCGACGA 298
Query 225 GCGGAAAAAGAAACGGAAATTATCGAACCGGGAATCGGCTAAGCGATCAAGAGAGAAGAA 284
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 299 GCGGAAAAAGAAACGGAAATTATCGAACCGGGAATCGGCTAAGCGGTCAAGAGAGAAGAA 358
Query 285 ACAAAAACACTTGGAGGAGATGAGTATGCAGCTAAACCAGCTCAAGACTCAGAACCAAGA 344
|||||| |||||||||||||||||||| ||||||||||| ||||| | ||||||||||||
Sbjct 359 ACAAAAGCACTTGGAGGAGATGAGTATCCAGCTAAACCAACTCAAAATTCAGAACCAAGA 418
Query 345 ATTGACA-AACCAGCTCCGGTACGTTTTATACCACTGTCAACGAACGAAGATGGAAAATG 403
||||| | |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 419 ATTGA-AGAACCAGCTTCGGTACGTTTTATACCATTGTCAACGAACGAAGATGGAAAATG 477
Query 404 ATCGTCTACGTATGGAGCACCGTAGT-CTCCAAGATAAGTTGTTGAACATTAGACAAGTT 462
||||||||| |||||||||||||| | || || ||||||||||||||||| |||||||||
Sbjct 478 ATCGTCTACTTATGGAGCACCGTA-TACTGCATGATAAGTTGTTGAACATCAGACAAGTT 536
Query 463 TTGATGTTTCGTCAAATCGAACGAAGCTCATTAAACTGTTCCACTTGGCCTTGTAGTAAC 522
|||||||||||||||| | |||||||||||| ||||||| ||||||||||||||| ||||
Sbjct 537 TTGATGTTTCGTCAAACCTAACGAAGCTCATCAAACTGTGCCACTTGGCCTTGTAATAAC 596
Query 523 AGTACTGTTGTTACGGTCCAACAAGATCCGTCGATCATGTTATAATACTTTGATGTTTCT 582
|||||||||||||||||||| |||||||||||||||||||||| ||| |||| ||||||
Sbjct 597 AGTACTGTTGTTACGGTCCAGCAAGATCCGTCGATCATGTTATCATAAGTTGAGGTTTCT 656
Query 583 TGAAA 587
||||
Sbjct 657 -GAAA 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28231590614
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5