BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937805
Length=284
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49780.1 | Symbols: ATPSK4, ATPSK3 (FORMER SYMBOL), PSK4 | p... 403 4e-112
> AT3G49780.1 | Symbols: ATPSK4, ATPSK3 (FORMER SYMBOL), PSK4 |
phytosulfokine 4 precursor | chr3:18465679-18466376 FORWARD
LENGTH=433
Length=433
Score = 403 bits (218), Expect = 4e-112
Identities = 257/275 (93%), Gaps = 6/275 (2%)
Strand=Plus/Plus
Query 12 TGCAAATCACAATGGCTAAGTTCACAACCATTTTCATCATGGCTCTCCTTCTTTGCTCAA 71
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 TGCAAATCAGTATGGGTAAGTTCACAACCATTTTCATCATGGCTCTCCTTCTTTGCTCTA 120
Query 72 CACTAACCTACGCAGCAAGGCTGACTCCAACGACAACCACCGCTTCT-TCCAGAGAAAAC 130
| |||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||
Sbjct 121 CGCTAACCTACGCAGCAAGGCTGACTCCGACGACAACCACCGCTT-TGTCCAGAGAAAAC 179
Query 131 TCCGTCAAGGAAATTGAAGGAGACAATGTTGAAGAAGAAAGCTGCATA-GGAATTGGAGA 189
|||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||
Sbjct 180 TCCGTCAAGGAAATTGAAGGAGACAAGGTTGAAGAAGAAAGCTGCA-ACGGAATTGGAGA 238
Query 190 AGAAGAATGTTTGATAAGACGAAGCCTTGTTGTTCACACCGATTACATTTACACTCAGAA 249
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 239 AGAAGAATGTTTGATAAGACGAAGCCTTGTTCTTCACACCGATTACATTTATACTCAGAA 298
Query 250 TCACAAGCACTAAATTTCTATGTATTAGAGTAATT 284
|||||||| |||| ||||| ||||||||| ||||
Sbjct 299 TCACAAGCCCTAAGTTTCT--GTATTAGAGCAATT 331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13069614740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5