BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937818
Length=1439
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49880.1 | Symbols: | glycosyl hydrolase family protein 43 ... 2211 0.0
> AT3G49880.1 | Symbols: | glycosyl hydrolase family protein 43
| chr3:18496249-18498713 FORWARD LENGTH=2066
Length=2066
Score = 2211 bits (1197), Expect = 0.0
Identities = 1361/1441 (94%), Gaps = 7/1441 (0%)
Strand=Plus/Plus
Query 1 GATAAATCTTTGG-AATAAAGATGAGGGTGATGAAGAATAAACACAACAAGAAAGCAACG 59
||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 330 GATAAATCTTTGGAAACAAAGATGAGGGTGATGAAGAACAAACACAACAAGAAAGCAACG 389
Query 60 TTTTTACGTTGTTCACCGTTTGGTTTAGTATCTACAGTTGTGGGATGTGTTTTTATGATT 119
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 390 TTTTTGCGTTGTTCACCGTTTGGTTTAGTATCTACAGTTGTGGGATGTGTTTTCATGATT 449
Query 120 CATTTCACCATGTTATATAGCAGAAGATATAGTGTAGATCTTGAAGTTTCACCTCAGTTA 179
||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 450 CATTTAACCATGTTATATAGCAGAAGTTATAGTGTAGATCTTGATCTTTCACCTCAGTTA 509
Query 180 CTTATCCATCATCCTATTGTCCGTGAGCTCGAACACGCTGAAGAAGAGAATATTCATATG 239
|||||||||||||| ||||||||||||||||||| || ||||||||||||||| ||||||
Sbjct 510 CTTATCCATCATCCGATTGTCCGTGAGCTCGAACGCGTTGAAGAAGAGAATATCCATATG 569
Query 240 CCGCCTCCTAGAAAGCGTTCTCCGCGAGCTATCAAACGGAAACCAAAAATACCAACCACT 299
||||||||||| ||||||||||| || |||||||||||||||||||||| ||||||||||
Sbjct 570 CCGCCTCCTAGGAAGCGTTCTCCTCGCGCTATCAAACGGAAACCAAAAACACCAACCACT 629
Query 300 TTAGTCGAAGAGTTTCTTGACGAGAATTCTCAGATTCGCCATCTGTTTTTCCCTGATATG 359
||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 630 TTAGTCGAAGAGTTTCTCGACGAGAATTCACAGATTCGACATCTTTTTTTCCCTGATATG 689
Query 360 AAATCAGCTTTTGGTCCTACCAAGG--G-TAATAATGATACATCACATTACTACTTCCCG 416
||||||||||||||||||||||||| | || |||||| ||||| |||||||||||||||
Sbjct 690 AAATCAGCTTTTGGTCCTACCAAGGAAGATACTAATGACACATCGCATTACTACTTCCCG 749
Query 417 GGGAGAATTTGGACAGACACGGAAGGGAATCCGATTCAAGCACACGGTGGTGGCATTTTA 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 GGGAGAATTTGGACAGACACGGAAGGGAATCCGATTCAAGCACACGGTGGTGGCATTTTG 809
Query 477 TTTGATGAGATATCTAAGGTTTACTATTGGTATGGTGAATATAAAGATGGACCAACTTAT 536
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 TTTGATGACATATCAAAGGTTTACTATTGGTATGGTGAATATAAAGATGGACCAACTTAT 869
Query 537 CTTTCTCACAAGAAAGGTGCCGCTCGAGTTGATATAATCGGTGTTGGATGCTACTCGTCG 596
|||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||
Sbjct 870 CTTTCTCACAAGAAAGGTGCTGCTAGAGTTGATATAATCGGTGTTGGATGTTACTCGTCG 929
Query 597 AAAGATTTATGGACATGGAAAAACGAAGGCGTTGTATTAGCAGCCGAAGAAACAGATGAG 656
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 930 AAAGATTTATGGACATGGAAAAACGAAGGTGTTGTATTAGCAGCCGAAGAAACAGATGAG 989
Query 657 ACACATGATTTACACAAATCCAATGTTCTAGAGCGCCCTAAAGTGATATACAATTCAGAA 716
|||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 990 ACACATGACTTACACAAATCCAATGTTCTTGAGCGTCCTAAAGTGATATACAATTCAGAT 1049
Query 717 ACAAGTAAGTACGTGATGTGGATGCATATCGATGATGCAAACTACACGAAAGCTTCAGTT 776
||| |||||||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 1050 ACAGGTAAGTACGTGATGTGGATGCATATCGACGATGCAAACTACACTAAAGCTTCGGTT 1109
Query 777 GGTGTAGCCATTAGCGATAACCCAACAGGTCCATTCGATTACTTATACAGCAGATCACCA 836
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1110 GGTGTAGCCATTAGCGATAACCCAACAGGTCCATTCGATTACTTATACAGCAGATCGCCA 1169
Query 837 CACGGGTTCGACAGTAGAGACATGACAGTCTACAAAGACGATGATAACATCGCCTACTTG 896
|||||||| || |||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1170 CACGGGTTTGATAGTAGAGACATGACAGTCTACAAAGACGATGATAACGTAGCCTACTTG 1229
Query 897 ATATATTCATCAGAGGACAACAGCGTACTACATATCGGTCCTCTAACCGAGAATTACCTC 956
|||||||||||||||||||||||||| || ||||||||||| || |||||||||||||||
Sbjct 1230 ATATATTCATCAGAGGACAACAGCGTGCTGCATATCGGTCCCCTGACCGAGAATTACCTC 1289
Query 957 GATGTGAAGCCGGTGATGAAGAGAATCATGGTGGGACAACACAGAGAAGCTCCTGCTATT 1016
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1290 GATGTGAAGCCGGTAATGAAGAGAATCATGGTGGGACAACACAGAGAAGCTCCGGCTATC 1349
Query 1017 TTCAAACACCAAAACACTTACTACATGATCACTTCTGGTTGCACCGGATGGGCACCAAAC 1076
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1350 TTCAAACATCAAAACACTTACTACATGATCACGTCTGGTTGCACCGGATGGGCACCAAAC 1409
Query 1077 GAAGCTTTAGCTCATGCCGCTGAGTCGATAATGGGTCCATGGGAGACATTAGGGAATCCA 1136
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1410 GAAGCATTAGCTCATGCCGCTGAGTCGATAATGGGTCCGTGGGAGACATTAGGGAATCCA 1469
Query 1137 TGTGTTGGCGGGAACAATATTTTCCGGTCAACAACGTTTTTCGCGCAGAGCACATTCGTG 1196
|||||||||||||||| ||||||||| || || |||||||||||||||||||| ||||||
Sbjct 1470 TGTGTTGGCGGGAACAGTATTTTCCGTTCGACGACGTTTTTCGCGCAGAGCACGTTCGTG 1529
Query 1197 ATACCATTACCAGGTGTTCCCGGTGTGTATATATTTATGGCGGATAGGTGGAATCCGGCG 1256
|| || |||||||||||||| ||||||| |||||||||||| ||||||||||||||||||
Sbjct 1530 ATTCCGTTACCAGGTGTTCCTGGTGTGTTTATATTTATGGCCGATAGGTGGAATCCGGCG 1589
Query 1257 GATTTGAGAGATTCGAGATATTTATGGTTACCGTTGATAGTTGGTGGACCGGCTGATAGG 1316
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1590 GATTTGCGAGATTCGAGATATTTGTGGTTACCGTTGATAGTTGGTGGACCGGCTGATCGT 1649
Query 1317 CCTCTTGAGTATAATTTCGGGTTTCCAATGTGGTCGAGAGTGTCTGTATATTGGCATAGA 1376
||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1650 CCTCTTGAGTATAGTTTCGGGTTTCCGATGTGGTCGAGAGTTTCTGTATATTGGCATAGA 1709
Query 1377 CAATGGCGGTTGCCTTCAGCAAGTGAGAAGAAGATTGCTTA-A-AAAA-GACTAAGCTTT 1433
||||||||||||||||||||||| ||||||||||||||||| | |||| ||| |||||||
Sbjct 1710 CAATGGCGGTTGCCTTCAGCAAGAGAGAAGAAGATTGCTTAGAGAAAAAGACAAAGCTTT 1769
Query 1434 T 1434
|
Sbjct 1770 T 1770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70933370085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5