BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937821
Length=488
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49910.1 | Symbols: | Translation protein SH3-like family p... 793 0.0
> AT3G49910.1 | Symbols: | Translation protein SH3-like family
protein | chr3:18504256-18504967 FORWARD LENGTH=712
Length=712
Score = 793 bits (429), Expect = 0.0
Identities = 468/487 (96%), Gaps = 1/487 (0%)
Strand=Plus/Plus
Query 1 CTCTCTCAATCCCGGCGGCGAAAGATGAAGTACAATCCAAGAGTGACCTCTTCCCGCAGG 60
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 33 CTCTCTCAATCCCGGCGGCG-AAGATGAAGTACAACCCAAGAGTGACCTCTTCTCGCAGA 91
Query 61 AAGAACAGGAAGGCTCATTTCACAGCTTCCTCAAGCGAGAGGCGTGTGATAATGAGCTCT 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 92 AAGAACAGGAAGGCTCATTTCACAGCTTCCTCCAGCGAGAGGCGTGTGATAATGAGCTCT 151
Query 121 CCACTCTCCACCGATCTTCGTCAGAAGTACAATGTCAGATCCATGCCGATCCGTAAAGAT 180
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 152 CCTCTCTCCACCGATCTTCGTCAGAAGTACAATGTCAGATCCATGCCGATCCGTAAAGAC 211
Query 181 GACGAGGTTCAGATCGTTCGTGGTACTTACAAGGGACGTGAAGGTAAAGTTGTTCAGGTT 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 212 GACGAGGTTCAGATCGTTCGTGGTACTTACAAGGGACGTGAAGGCAAAGTTGTTCAGGTT 271
Query 241 TACCGTCGCAAATGGGTGATTCACATCGAGAGGATTACAAGAGAGAAGGTGAATGGAACC 300
|||||||||||||||||||||||||||||||| || || || |||||||||||||||||
Sbjct 272 TACCGTCGCAAATGGGTGATTCACATCGAGAGAATCACGAGGGAGAAGGTGAATGGAACA 331
Query 301 ACCGTGAACGTTGGGATTCAGCCGTCGAAAGTTGTGATAACGAAGCTTCGTCTTGATAAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 ACCGTGAACGTTGGGATTCAGCCGTCGAAAGTTGTGATAACGAAGCTTCGTCTTGATAAA 391
Query 361 GATAGGAAATCGCTTTTGGAGAGGAAAGCTAAGGGTCGTGCTGCTGCTGATAAGGAGAAG 420
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 392 GATAGGAAATCGCTTTTGGAGAGGAAGGCTAAGGGACGTGCTGCTGCTGATAAGGAGAAG 451
Query 421 GGTACTAAGTTTACTTCGGAGGATGTTATGCAGAACGTTGATTAAGTGATAAGGAAGAAG 480
|||||||||||||| || ||||||||||||||||||||||||||||| | ||||||||||
Sbjct 452 GGTACTAAGTTTACGTCTGAGGATGTTATGCAGAACGTTGATTAAGTAAGAAGGAAGAAG 511
Query 481 AAATCTT 487
|||||||
Sbjct 512 AAATCTT 518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23258410061
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5