BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937833
Length=3238
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47430.1 | Symbols: CKI1 | Signal transduction histidine kin... 3816 0.0
> AT2G47430.1 | Symbols: CKI1 | Signal transduction histidine kinase
| chr2:19459045-19464087 REVERSE LENGTH=3677
Length=3677
Score = 3816 bits (2066), Expect = 0.0
Identities = 2506/2721 (92%), Gaps = 19/2721 (1%)
Strand=Plus/Plus
Query 4 CTGGTGGTTGTTTTCGGGTGCACATGGATCTCGAATTGGCGAACAACGACGGAGAACGTA 63
|||||||||||||||| ||||| |||||||| |||||||||||||| ||||||||| ||
Sbjct 253 CTGGTGGTTGTTTTCGAGTGCATTTGGATCTCAAATTGGCGAACAACAACGGAGAACCTA 312
Query 64 GCCAAAGACGTCGCTTCATTTACCGAAGATCTCCGGACAAGTCTTGTTTCCGAGATTTAA 123
| |||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| ||
Sbjct 313 GTCAAAGAGGTCGCTTCATTTACCGAAGATCTCCGGACAAGTCTAGTTTCGGAGATTGAA 372
Query 124 AACATTGGAAAATTTACATATCCCAAGACGAACTTATCTACAATCGGTTTAGCAAGAGTT 183
||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||
Sbjct 373 AACATCGGAAAATTTACATATGCCAAGACAAACTTATCTACGATCGGTTTAGCGAGAGTT 432
Query 184 TTAGATTCTTATCTCACCAACAA-GACACTGATTTCT-CAGAGATTCAAACAAAGATCGC 241
||||||||||| |||||||||| ||||||| ||| | |||||||||||||| |||||||
Sbjct 433 ATAGATTCTTATATCACCAACAACGACACTGGTTT-TACAGAGATTCAAACACAGATCGC 491
Query 242 ACCATTGTTGTTTGAAGCTTATTCAACGATCCCTCAAGTCTCACAAGTTTCGTACATTAG 301
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 492 ACCATTGTTGTTTGTAGCTTATTCAACGATCCTTCAAGTCTCACAAGTTTCGTACATCAG 551
Query 302 TAGGGCCGGTCTCCTGTTTTCTTACATTGCAGAATCAAACACAAGTGTAGCTGTTTTTGC 361
||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 552 TAGGGACGGTCTCATGTTTTCTTACATTGCAGAATCAAACACAAGTGTCGCTGTTTTTGC 611
Query 362 AAATTCCTCGTCGACTTCAAGTGGTGGAGACTACACTTGGTACACTCAAACCGTTGATCA 421
||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 612 CAATTCCTCGTCGAATTCAAGTCGTGGAGACTACACTTGGTACACTCAAACCGTGGATCA 671
Query 422 ATTAACCGGTCGTCTCAACGGGAACGCAACGAAATCTCAGCCGTTAGATTTAACCCATAC 481
||||| |||||||| ||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct 672 GTTAACTGGTCGTCTTAACGGGAACTCAACGAAATCTCAGTCGTTAGATGTAACCCATAC 731
Query 482 AGATTGGTTCCAAGTAGCACAGAGTGATAATTACACTACCGCCTTTCTAGGAACAAGTTT 541
|||||||||||||| |||||||||| |||| |||||||| |||||| ||||||| || ||
Sbjct 732 AGATTGGTTCCAAGCAGCACAGAGTAATAACTACACTACAGCCTTTGTAGGAACGAGCTT 791
Query 542 GGGAGGAGAAGAAAACGAGACTCTAATTCAGAGCGTGGTTAGCTTGTACAGCAATAAAGG 601
|||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 792 GGGAGGAGAAGATAACGAGACTCTAATACAGAGCGTGGTTAGCTTGTACAGCAAGAAAGG 851
Query 602 TCTTGTTTCGCTAGGGTTTCCGGTTAAGACTTTAACTGATGTTTTGAACAGTTTGAATCT 661
||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 852 TCTTGTTTCTTTAGGGTTTCCGGTTAAGACTTTAACCGAAGTTTTGAACAGTTTGAATCT 911
Query 662 ACACGGCGAAGAGCTTTACATGTGGACAAAGGACGAGACGATGCTTGTTCGTCAAGGTTC 721
||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||
Sbjct 912 ACACGGCGAAGAGCTTTACATGTGGACAAAGGACGGGACGGTGCTTGTTCGTGAAGGTTC 971
Query 722 ACTGAATGCTTCTTTCTTCGTCTCCAATGGATCAATTTGCTTCAGTAGAGAATCTAAATC 781
|||||||| |||||||||| |||||||||| || ||||||||| |||||||||| || ||
Sbjct 972 ACTGAATGATTCTTTCTTCATCTCCAATGGCTCGATTTGCTTCGGTAGAGAATCGAACTC 1031
Query 782 TATCGGGTCTCAATGCATCCCTTATAACTGCAGTTCCAGTGGTTACGAGGTGGAGATCAA 841
|| ||||||||||||||||| | || |||||||||||||| |||||||||||||||||
Sbjct 1032 CCTCTGGTCTCAATGCATCCCTGAAAATTGCAGTTCCAGTGGCTACGAGGTGGAGATCAA 1091
Query 842 AAGATCAAAATTTCAAGCTTTTTGCTCTGTTCTTGAAGTTTCGGGCGTTTCTCTGAGATA 901
||||| || || |||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1092 AAGATTAAGATACCAAGCTTTTTGCTCTGTTATTGAAGTTTCGGGCGTTCCTCTGAGATA 1151
Query 902 CACACTCATGTTTCCTAACAAAAGTGGAGCAACACGCAT-AAGGGATCAAGCGGAAAAGG 960
||||||||||||||| |||||| | |||||||||||||| || | | |||||||||||||
Sbjct 1152 CACACTCATGTTTCCCAACAAAGGAGGAGCAACACGCATCAA-GCACCAAGCGGAAAAGG 1210
Query 961 CAATGTATCAACTTATTGTGGTTACGATATTTTTTGGCTTGGGTTGGCCTTTGTGGTTTG 1020
||| ||||||||||||||||||| ||||||| ||||||| ||||||||| | |||||||
Sbjct 1211 CAAAATATCAACTTATTGTGGTTATGATATTTCTTGGCTTCGGTTGGCCTGTATGGTTTG 1270
Query 1021 TGTGGTTTATGATGCAAGCAACAAGGAGAGAGATGCATATGCGTGCAGTGCTAATAAACC 1080
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1271 TGTGGTTTATGATGCAAGCAACAAGGAGAGAGATGCATATGCGTGCAACGCTGATAAACC 1330
Query 1081 AAATGGAAGCAACACAACAGGCTGAGAGAAAGAGCATGAACAAGAGTCAAGCATTTGCAA 1140
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 AAATGGAAGCGACACAACAAGCTGAGAGAAAGAGCATGAACAAGAGTCAAGCATTTGCAA 1390
Query 1141 ATGCTAGCCACGATATTAGAGGTGCCCTTGCAGGGATCAAAGGCCTGATTGATATATGTC 1200
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1391 ATGCTAGCCACGATATTAGAGGTGCCCTTGCAGGGATGAAAGGTCTGATTGATATATGTC 1450
Query 1201 GTGATGAAGTTAAACCAGGCTCTGACGTAGATACCACTCTTAGGCAAGTGAATGTTTGCT 1260
|||||| ||||||||| ||||| |||||||| |||||||| | |||||||||||||||
Sbjct 1451 GTGATGGAGTTAAACCTGGCTCCGACGTAGACACCACTCTCAACCAAGTGAATGTTTGCG 1510
Query 1261 CCAAGGATTTGGTTGTTCTGCTCAACTCTGTTTTGGACATGAGCAAAATCGAAAGCGGGA 1320
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1511 CCAAGGATTTGGTTGCTCTGCTCAACTCTGTTTTGGACATGAGCAAAATCGAAAGCGGGA 1570
Query 1321 AGATGCATTTAGTGGAAGAAGATTTCAACTTGGCAAAACTTCTTGAAGACATCATCGACT 1380
||||||| |||||||||||||||||||||||| | ||||||||||||||| ||||||| |
Sbjct 1571 AGATGCAGTTAGTGGAAGAAGATTTCAACTTGTCGAAACTTCTTGAAGACGTCATCGATT 1630
Query 1381 TTTACCATCCCGTTGCGATGAAGAAAGGGGTTGATGTAGTTTTGGA-CCTGCACAATGGC 1439
|||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||
Sbjct 1631 TTTACCATCCCGTTGCGATGAAGAAAGGGGTTGATGTAGTTTTGGATCC-GCACGATGGC 1689
Query 1440 TCGATATTCAAATTCTCGAATGTGCGAGGAGATAGTGGCAAACTGAAGCAGATTCTGAAC 1499
||| | ||||||||||||||||| ||||| |||||||||| |||||||||||||||||||
Sbjct 1690 TCGGTTTTCAAATTCTCGAATGTACGAGGGGATAGTGGCAGACTGAAGCAGATTCTGAAC 1749
Query 1500 AATCTTATCAGTAATGCTGTCAAGTTCACAGTGGACGGGCACATTTCGATCCGAGCTTGG 1559
|||||| | || ||||||||||||||||| || |||||||||||| || | ||||||||
Sbjct 1750 AATCTTGTTAGCAATGCTGTCAAGTTCACCGTCGACGGGCACATTGCGGTAAGAGCTTGG 1809
Query 1560 GCTCAAAGGCCAAGTTCCAAAAGCTCTGTGGTCCTGGCATCGGACCCTCAAGGTGTGTCC 1619
||||| |||||| ||||||| |||||||||||||| ||||| | ||| |||||||||||
Sbjct 1810 GCTCAGAGGCCAGGTTCCAATAGCTCTGTGGTCCTTGCATCATATCCTAAAGGTGTGTCC 1869
Query 1620 AAGATTT-TGAAGAGTATGTTCTGCAAGAATAAAGACCAGTCATCAACCTGCGAAACAGA 1678
||| ||| | |||||||||||||||||||||||||| |||||||||||| ||| |||||
Sbjct 1870 AAG-TTTGTAAAGAGTATGTTCTGCAAGAATAAAGAAGAGTCATCAACCTACGAGACAGA 1928
Query 1679 AATATCGAATTCCATAAGAAACAACGCCAACACGATGGAGTTTGTGTTTGAAGTGGACGA 1738
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 1929 AATATCGAATTCCATAAGAAACAATGCAAACACGATGGAGTTTGTGTTTGAAGTGGATGA 1988
Query 1739 TACAGGTAGAGGGATACCTATGGAGATGCGTAAATCGGTGTTTGAAAACAATGTTCAAGT 1798
||| |||| |||||||||||||||||||||||| ||||| ||||||||| ||||||||||
Sbjct 1989 TACTGGTAAAGGGATACCTATGGAGATGCGTAAGTCGGTATTTGAAAACTATGTTCAAGT 2048
Query 1799 AAGAGAAACA----A-G-ACACCAAGGAACTGGTTTAGGGCTTGGCATTGTACAGTCGTC 1852
|||||||||| | | |||||||||||||||||||||||| || ||||| ||||| |
Sbjct 2049 AAGAGAAACAGCTCAAGGACACCAAGGAACTGGTTTAGGGCTCGGGATTGTGCAGTC-T- 2106
Query 1853 TTTGGTAAGATTAATGGGAGGAGAGATAAGAATCACCGACAAGGCCATGGGAGAGAAAGG 1912
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2107 TT-GGTAAGATTAATGGGAGGGGAGATAAGAATCACCGACAAGGCCATGGGAGAGAAAGG 2165
Query 1913 AACATGTTTCCAATTCAATGTTTTATTGACAACATTAGATTCTCCTCCAGTAAGTGACAT 1972
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2166 AACATGTTTCCAATTCAATGTTTTATTGACAACATTAGAGTCTCCTCCAGTGAGTGACAT 2225
Query 1973 GAAAGCGAAACAGGACATCGAAGTAGGAGGCGAATACGTATCCACGCCAAACCTCGGGCT 2032
||||| || |||||| ||||||| ||||||||| || |||||||||||||||||||||||
Sbjct 2226 GAAAGTGAGACAGGAGATCGAAGCAGGAGGCGATTATGTATCCACGCCAAACCTCGGGCT 2285
Query 2033 GACTATAAATACTTCACTGGGAGCTATTATGAATATACGCAACCTGAGTCCTAGATTCAA 2092
||||||||| |||||||| |||| || ||||||||||| ||||||||||||||||||||
Sbjct 2286 GACTATAAACACTTCACTTGGAGGTAGCATGAATATACGTAACCTGAGTCCTAGATTCAA 2345
Query 2093 CAACTGTCTCAGCTCAAGTCCAAAGCAAGAATGTTCTAGAGTGGTTCTCCTATTGAAAAA 2152
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 2346 CAACTGTCTCAGCTCAAGTCCAAAGCAAGAAGGTTCTAGAGTGGTTCTTCTATTGAAAAA 2405
Query 2153 CGAAGAACGCAGAAGAGTTACTGAGAAATATATAAAGAATCTTGGGATTAAAGTTTCAGT 2212
|||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||
Sbjct 2406 TGAAGAACGCAGAAGAGTTACAGAGAAATACATAAAGAATCTTGGGATTAAAGTTACAGT 2465
Query 2213 GGTGGAGAAATGGGAGCATTTAAGTTATGCCCTGGAGAGACTTTTTGGATTTTCACCTCA 2272
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 2466 GGTGGAGAAATGGGAGCATTTGAGTTATGCTTTGGAGAGACTTTTTGGATTTTCACCTCA 2525
Query 2273 GAGTTCCATGGGAAGAGCAGAGTGTAGCTTGTCAAATCCGAGCTCACGGGAGTTACCATT 2332
||||||||||||||||||||||||||| |||||| |||||||||| |||||||||| ||
Sbjct 2526 GAGTTCCATGGGAAGAGCAGAGTGTAGTTTGTCATGTCCGAGCTCAAGGGAGTTACCTTT 2585
Query 2333 GATTGGCATGGATGGTATTGATTCAAGAAGCCAACTTCCTAAAAAGAGAAGCAACAGTTT 2392
||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 2586 CATTGGCATGGACGGTATTGATTCAAGAAGCCAACTTCCTAAAAGGAGAAGCATCAGTTT 2645
Query 2393 CTCTGCACTTGTCCTCTTGGTGATTGATGCAAAAACTGGACCATTTTTTGAGTTGTACGA 2452
||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 2646 CTCTGCAGTTGTCCTTTTGGTGATTGATGCAAAAACTGGACCATTTTTTGAGCTGTGCGA 2705
Query 2453 TATTGTCAAACAGTTTCGTAGAGGCTTGCCCCATGGAATAACCTGTAAAGTTGTTTGGCT 2512
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2706 TATTGTCAAACAGTTTCGTAGAGGCTTGCCCCATGGAATATCCTGTAAAGTTGTTTGGCT 2765
Query 2513 AAACGAATCGAGCACTCGTGTAAGTGAGAAAGGGGACATTAGTTGTTCTAGACCCTTGCA 2572
|||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||
Sbjct 2766 TAACGAATCGAGCACTCGTGTAAGTGAGAGAGGGGACATTAGTTGTTCGAGACCTTTGCA 2825
Query 2573 CGGATCGCATCTTATGGAAGTCTTGAAGATGTTACCTGAATTTGGAGGAACTTTTCTAAA 2632
|||||||| |||||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 2826 CGGATCGCGTCTTATGGAAGTCTTGAAGATGTTGCCTGAATTTGGAGGAACTGTGCTAAA 2885
Query 2633 AGAAACACCAACTGAGCTGCAAAGGGAATCACTGTTGAGACATTCTTTTGTTGCAGAGAG 2692
|||| |||| ||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 2886 AGAACCACCTACTGAGCTGCAAAGGGAATCATTGCTGAGACATTCTTTTGTTGCAGAGAG 2945
Query 2693 ATCACCAAAACA-AAATTCCA 2712
|||||||||||| ||| ||||
Sbjct 2946 ATCACCAAAACATAAAGTCCA 2966
Score = 468 bits (253), Expect = 2e-130
Identities = 299/320 (93%), Gaps = 7/320 (2%)
Strand=Plus/Plus
Query 2717 TTCAGAGAGTGAGACTTGGGTCAAGTCAGTGCGTACAGGTGGAAATCTTATTGGGAACCC 2776
|||||||||||||||| ||||||||||||||||||| ||| |||| | ||||||||||||
Sbjct 3030 TTCAGAGAGTGAGACTAGGGTCAAGTCAGTGCGTACCGGTCGAAAGCCTATTGGGAACCC 3089
Query 2777 AGAGGACGAGCAAGGA-ACTTCCAAGCCGAGTGACGATGAATTCTTAAGAGGAAAGAGAG 2835
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3090 AGAGGACGAGCAA-GAGACTTCCAAGCCGAGTGACGATGAATTCTTAAGAGGAAAGAGAG 3148
Query 2836 TTCTTGTGGTCGATGATAACTTTTTAAT-ACGTAAAGTTGCAACAGGAAAGCTAAAGAAG 2894
||||||||||||||||||||||| || | |||||||||||||||||||||||| ||||||
Sbjct 3149 TTCTTGTGGTCGATGATAACTTTATA-TCACGTAAAGTTGCAACAGGAAAGCTGAAGAAG 3207
Query 2895 ATGGGAGTCTCCGAGGTCAAACAATGCGACAGTGGAAAAGAAGCTTTGAGATTAGTCACT 2954
||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 3208 ATGGGAGTCTCAGAGGTCGAACAATGCGACAGTGGGAAAGAAGCTTTGAGATTAGTCACT 3267
Query 2955 GAAGGGCTTGCACAAAGAAGAGAAGAACAAGGTTCAATATATAACCTTCCGTTTGACTAC 3014
||||||||| |||||||| || | |||||||||||| || |||| |||||||||||||||
Sbjct 3268 GAAGGGCTTACACAAAGA-GA-A-GAACAAGGTTCAGTAGATAAACTTCCGTTTGACTAC 3324
Query 3015 ATATTCATGGACTGCCAAAT 3034
||||||||||||||||||||
Sbjct 3325 ATATTCATGGACTGCCAAAT 3344
Score = 265 bits (143), Expect = 2e-69
Identities = 160/168 (95%), Gaps = 2/168 (1%)
Strand=Plus/Plus
Query 3033 ATTAGGAAAGTGGAGAAAAGTTATGGGGTGCGTATACCAGTTATAGCTGTATCTGGTCAT 3092
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 3379 ATTAGGAAAGTGGAGAAAAGTTATGGGGTGCGTACACCAATTATAGCTGTATCTGGTCAT 3438
Query 3093 GATCATGGTTCAAG-GGAAGCAAGAGAAACCATTCAAGCTGGAATGGACGCCTTCTTAGA 3151
|||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3439 GATCCTGGTTC-AGAGGAAGCAAGAGAAACCATTCAAGCTGGAATGGACGCCTTCTTAGA 3497
Query 3152 TAAAAACTTGAATCAACTTGCAAATGTCATTAGAGATATCGAAAGCAA 3199
||||| |||||||||||||||||| ||||||||||| |||||||||||
Sbjct 3498 TAAAAGCTTGAATCAACTTGCAAACGTCATTAGAGAAATCGAAAGCAA 3545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 161086053973
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5