BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937833 Length=3238 Score E Sequences producing significant alignments: (Bits) Value AT2G47430.1 | Symbols: CKI1 | Signal transduction histidine kin... 3816 0.0 > AT2G47430.1 | Symbols: CKI1 | Signal transduction histidine kinase | chr2:19459045-19464087 REVERSE LENGTH=3677 Length=3677 Score = 3816 bits (2066), Expect = 0.0 Identities = 2506/2721 (92%), Gaps = 19/2721 (1%) Strand=Plus/Plus Query 4 CTGGTGGTTGTTTTCGGGTGCACATGGATCTCGAATTGGCGAACAACGACGGAGAACGTA 63 |||||||||||||||| ||||| |||||||| |||||||||||||| ||||||||| || Sbjct 253 CTGGTGGTTGTTTTCGAGTGCATTTGGATCTCAAATTGGCGAACAACAACGGAGAACCTA 312 Query 64 GCCAAAGACGTCGCTTCATTTACCGAAGATCTCCGGACAAGTCTTGTTTCCGAGATTTAA 123 | |||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| || Sbjct 313 GTCAAAGAGGTCGCTTCATTTACCGAAGATCTCCGGACAAGTCTAGTTTCGGAGATTGAA 372 Query 124 AACATTGGAAAATTTACATATCCCAAGACGAACTTATCTACAATCGGTTTAGCAAGAGTT 183 ||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||| |||||| Sbjct 373 AACATCGGAAAATTTACATATGCCAAGACAAACTTATCTACGATCGGTTTAGCGAGAGTT 432 Query 184 TTAGATTCTTATCTCACCAACAA-GACACTGATTTCT-CAGAGATTCAAACAAAGATCGC 241 ||||||||||| |||||||||| ||||||| ||| | |||||||||||||| ||||||| Sbjct 433 ATAGATTCTTATATCACCAACAACGACACTGGTTT-TACAGAGATTCAAACACAGATCGC 491 Query 242 ACCATTGTTGTTTGAAGCTTATTCAACGATCCCTCAAGTCTCACAAGTTTCGTACATTAG 301 |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| || Sbjct 492 ACCATTGTTGTTTGTAGCTTATTCAACGATCCTTCAAGTCTCACAAGTTTCGTACATCAG 551 Query 302 TAGGGCCGGTCTCCTGTTTTCTTACATTGCAGAATCAAACACAAGTGTAGCTGTTTTTGC 361 ||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 552 TAGGGACGGTCTCATGTTTTCTTACATTGCAGAATCAAACACAAGTGTCGCTGTTTTTGC 611 Query 362 AAATTCCTCGTCGACTTCAAGTGGTGGAGACTACACTTGGTACACTCAAACCGTTGATCA 421 ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 612 CAATTCCTCGTCGAATTCAAGTCGTGGAGACTACACTTGGTACACTCAAACCGTGGATCA 671 Query 422 ATTAACCGGTCGTCTCAACGGGAACGCAACGAAATCTCAGCCGTTAGATTTAACCCATAC 481 ||||| |||||||| ||||||||| |||||||||||||| |||||||| |||||||||| Sbjct 672 GTTAACTGGTCGTCTTAACGGGAACTCAACGAAATCTCAGTCGTTAGATGTAACCCATAC 731 Query 482 AGATTGGTTCCAAGTAGCACAGAGTGATAATTACACTACCGCCTTTCTAGGAACAAGTTT 541 |||||||||||||| |||||||||| |||| |||||||| |||||| ||||||| || || Sbjct 732 AGATTGGTTCCAAGCAGCACAGAGTAATAACTACACTACAGCCTTTGTAGGAACGAGCTT 791 Query 542 GGGAGGAGAAGAAAACGAGACTCTAATTCAGAGCGTGGTTAGCTTGTACAGCAATAAAGG 601 |||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 792 GGGAGGAGAAGATAACGAGACTCTAATACAGAGCGTGGTTAGCTTGTACAGCAAGAAAGG 851 Query 602 TCTTGTTTCGCTAGGGTTTCCGGTTAAGACTTTAACTGATGTTTTGAACAGTTTGAATCT 661 ||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 852 TCTTGTTTCTTTAGGGTTTCCGGTTAAGACTTTAACCGAAGTTTTGAACAGTTTGAATCT 911 Query 662 ACACGGCGAAGAGCTTTACATGTGGACAAAGGACGAGACGATGCTTGTTCGTCAAGGTTC 721 ||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| Sbjct 912 ACACGGCGAAGAGCTTTACATGTGGACAAAGGACGGGACGGTGCTTGTTCGTGAAGGTTC 971 Query 722 ACTGAATGCTTCTTTCTTCGTCTCCAATGGATCAATTTGCTTCAGTAGAGAATCTAAATC 781 |||||||| |||||||||| |||||||||| || ||||||||| |||||||||| || || Sbjct 972 ACTGAATGATTCTTTCTTCATCTCCAATGGCTCGATTTGCTTCGGTAGAGAATCGAACTC 1031 Query 782 TATCGGGTCTCAATGCATCCCTTATAACTGCAGTTCCAGTGGTTACGAGGTGGAGATCAA 841 || ||||||||||||||||| | || |||||||||||||| ||||||||||||||||| Sbjct 1032 CCTCTGGTCTCAATGCATCCCTGAAAATTGCAGTTCCAGTGGCTACGAGGTGGAGATCAA 1091 Query 842 AAGATCAAAATTTCAAGCTTTTTGCTCTGTTCTTGAAGTTTCGGGCGTTTCTCTGAGATA 901 ||||| || || |||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 1092 AAGATTAAGATACCAAGCTTTTTGCTCTGTTATTGAAGTTTCGGGCGTTCCTCTGAGATA 1151 Query 902 CACACTCATGTTTCCTAACAAAAGTGGAGCAACACGCAT-AAGGGATCAAGCGGAAAAGG 960 ||||||||||||||| |||||| | |||||||||||||| || | | ||||||||||||| Sbjct 1152 CACACTCATGTTTCCCAACAAAGGAGGAGCAACACGCATCAA-GCACCAAGCGGAAAAGG 1210 Query 961 CAATGTATCAACTTATTGTGGTTACGATATTTTTTGGCTTGGGTTGGCCTTTGTGGTTTG 1020 ||| ||||||||||||||||||| ||||||| ||||||| ||||||||| | ||||||| Sbjct 1211 CAAAATATCAACTTATTGTGGTTATGATATTTCTTGGCTTCGGTTGGCCTGTATGGTTTG 1270 Query 1021 TGTGGTTTATGATGCAAGCAACAAGGAGAGAGATGCATATGCGTGCAGTGCTAATAAACC 1080 ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 1271 TGTGGTTTATGATGCAAGCAACAAGGAGAGAGATGCATATGCGTGCAACGCTGATAAACC 1330 Query 1081 AAATGGAAGCAACACAACAGGCTGAGAGAAAGAGCATGAACAAGAGTCAAGCATTTGCAA 1140 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1331 AAATGGAAGCGACACAACAAGCTGAGAGAAAGAGCATGAACAAGAGTCAAGCATTTGCAA 1390 Query 1141 ATGCTAGCCACGATATTAGAGGTGCCCTTGCAGGGATCAAAGGCCTGATTGATATATGTC 1200 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 1391 ATGCTAGCCACGATATTAGAGGTGCCCTTGCAGGGATGAAAGGTCTGATTGATATATGTC 1450 Query 1201 GTGATGAAGTTAAACCAGGCTCTGACGTAGATACCACTCTTAGGCAAGTGAATGTTTGCT 1260 |||||| ||||||||| ||||| |||||||| |||||||| | ||||||||||||||| Sbjct 1451 GTGATGGAGTTAAACCTGGCTCCGACGTAGACACCACTCTCAACCAAGTGAATGTTTGCG 1510 Query 1261 CCAAGGATTTGGTTGTTCTGCTCAACTCTGTTTTGGACATGAGCAAAATCGAAAGCGGGA 1320 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1511 CCAAGGATTTGGTTGCTCTGCTCAACTCTGTTTTGGACATGAGCAAAATCGAAAGCGGGA 1570 Query 1321 AGATGCATTTAGTGGAAGAAGATTTCAACTTGGCAAAACTTCTTGAAGACATCATCGACT 1380 ||||||| |||||||||||||||||||||||| | ||||||||||||||| ||||||| | Sbjct 1571 AGATGCAGTTAGTGGAAGAAGATTTCAACTTGTCGAAACTTCTTGAAGACGTCATCGATT 1630 Query 1381 TTTACCATCCCGTTGCGATGAAGAAAGGGGTTGATGTAGTTTTGGA-CCTGCACAATGGC 1439 |||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| Sbjct 1631 TTTACCATCCCGTTGCGATGAAGAAAGGGGTTGATGTAGTTTTGGATCC-GCACGATGGC 1689 Query 1440 TCGATATTCAAATTCTCGAATGTGCGAGGAGATAGTGGCAAACTGAAGCAGATTCTGAAC 1499 ||| | ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||| Sbjct 1690 TCGGTTTTCAAATTCTCGAATGTACGAGGGGATAGTGGCAGACTGAAGCAGATTCTGAAC 1749 Query 1500 AATCTTATCAGTAATGCTGTCAAGTTCACAGTGGACGGGCACATTTCGATCCGAGCTTGG 1559 |||||| | || ||||||||||||||||| || |||||||||||| || | |||||||| Sbjct 1750 AATCTTGTTAGCAATGCTGTCAAGTTCACCGTCGACGGGCACATTGCGGTAAGAGCTTGG 1809 Query 1560 GCTCAAAGGCCAAGTTCCAAAAGCTCTGTGGTCCTGGCATCGGACCCTCAAGGTGTGTCC 1619 ||||| |||||| ||||||| |||||||||||||| ||||| | ||| ||||||||||| Sbjct 1810 GCTCAGAGGCCAGGTTCCAATAGCTCTGTGGTCCTTGCATCATATCCTAAAGGTGTGTCC 1869 Query 1620 AAGATTT-TGAAGAGTATGTTCTGCAAGAATAAAGACCAGTCATCAACCTGCGAAACAGA 1678 ||| ||| | |||||||||||||||||||||||||| |||||||||||| ||| ||||| Sbjct 1870 AAG-TTTGTAAAGAGTATGTTCTGCAAGAATAAAGAAGAGTCATCAACCTACGAGACAGA 1928 Query 1679 AATATCGAATTCCATAAGAAACAACGCCAACACGATGGAGTTTGTGTTTGAAGTGGACGA 1738 |||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || Sbjct 1929 AATATCGAATTCCATAAGAAACAATGCAAACACGATGGAGTTTGTGTTTGAAGTGGATGA 1988 Query 1739 TACAGGTAGAGGGATACCTATGGAGATGCGTAAATCGGTGTTTGAAAACAATGTTCAAGT 1798 ||| |||| |||||||||||||||||||||||| ||||| ||||||||| |||||||||| Sbjct 1989 TACTGGTAAAGGGATACCTATGGAGATGCGTAAGTCGGTATTTGAAAACTATGTTCAAGT 2048 Query 1799 AAGAGAAACA----A-G-ACACCAAGGAACTGGTTTAGGGCTTGGCATTGTACAGTCGTC 1852 |||||||||| | | |||||||||||||||||||||||| || ||||| ||||| | Sbjct 2049 AAGAGAAACAGCTCAAGGACACCAAGGAACTGGTTTAGGGCTCGGGATTGTGCAGTC-T- 2106 Query 1853 TTTGGTAAGATTAATGGGAGGAGAGATAAGAATCACCGACAAGGCCATGGGAGAGAAAGG 1912 || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2107 TT-GGTAAGATTAATGGGAGGGGAGATAAGAATCACCGACAAGGCCATGGGAGAGAAAGG 2165 Query 1913 AACATGTTTCCAATTCAATGTTTTATTGACAACATTAGATTCTCCTCCAGTAAGTGACAT 1972 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 2166 AACATGTTTCCAATTCAATGTTTTATTGACAACATTAGAGTCTCCTCCAGTGAGTGACAT 2225 Query 1973 GAAAGCGAAACAGGACATCGAAGTAGGAGGCGAATACGTATCCACGCCAAACCTCGGGCT 2032 ||||| || |||||| ||||||| ||||||||| || ||||||||||||||||||||||| Sbjct 2226 GAAAGTGAGACAGGAGATCGAAGCAGGAGGCGATTATGTATCCACGCCAAACCTCGGGCT 2285 Query 2033 GACTATAAATACTTCACTGGGAGCTATTATGAATATACGCAACCTGAGTCCTAGATTCAA 2092 ||||||||| |||||||| |||| || ||||||||||| |||||||||||||||||||| Sbjct 2286 GACTATAAACACTTCACTTGGAGGTAGCATGAATATACGTAACCTGAGTCCTAGATTCAA 2345 Query 2093 CAACTGTCTCAGCTCAAGTCCAAAGCAAGAATGTTCTAGAGTGGTTCTCCTATTGAAAAA 2152 ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct 2346 CAACTGTCTCAGCTCAAGTCCAAAGCAAGAAGGTTCTAGAGTGGTTCTTCTATTGAAAAA 2405 Query 2153 CGAAGAACGCAGAAGAGTTACTGAGAAATATATAAAGAATCTTGGGATTAAAGTTTCAGT 2212 |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||| Sbjct 2406 TGAAGAACGCAGAAGAGTTACAGAGAAATACATAAAGAATCTTGGGATTAAAGTTACAGT 2465 Query 2213 GGTGGAGAAATGGGAGCATTTAAGTTATGCCCTGGAGAGACTTTTTGGATTTTCACCTCA 2272 ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 2466 GGTGGAGAAATGGGAGCATTTGAGTTATGCTTTGGAGAGACTTTTTGGATTTTCACCTCA 2525 Query 2273 GAGTTCCATGGGAAGAGCAGAGTGTAGCTTGTCAAATCCGAGCTCACGGGAGTTACCATT 2332 ||||||||||||||||||||||||||| |||||| |||||||||| |||||||||| || Sbjct 2526 GAGTTCCATGGGAAGAGCAGAGTGTAGTTTGTCATGTCCGAGCTCAAGGGAGTTACCTTT 2585 Query 2333 GATTGGCATGGATGGTATTGATTCAAGAAGCCAACTTCCTAAAAAGAGAAGCAACAGTTT 2392 ||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 2586 CATTGGCATGGACGGTATTGATTCAAGAAGCCAACTTCCTAAAAGGAGAAGCATCAGTTT 2645 Query 2393 CTCTGCACTTGTCCTCTTGGTGATTGATGCAAAAACTGGACCATTTTTTGAGTTGTACGA 2452 ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 2646 CTCTGCAGTTGTCCTTTTGGTGATTGATGCAAAAACTGGACCATTTTTTGAGCTGTGCGA 2705 Query 2453 TATTGTCAAACAGTTTCGTAGAGGCTTGCCCCATGGAATAACCTGTAAAGTTGTTTGGCT 2512 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2706 TATTGTCAAACAGTTTCGTAGAGGCTTGCCCCATGGAATATCCTGTAAAGTTGTTTGGCT 2765 Query 2513 AAACGAATCGAGCACTCGTGTAAGTGAGAAAGGGGACATTAGTTGTTCTAGACCCTTGCA 2572 |||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| Sbjct 2766 TAACGAATCGAGCACTCGTGTAAGTGAGAGAGGGGACATTAGTTGTTCGAGACCTTTGCA 2825 Query 2573 CGGATCGCATCTTATGGAAGTCTTGAAGATGTTACCTGAATTTGGAGGAACTTTTCTAAA 2632 |||||||| |||||||||||||||||||||||| |||||||||||||||||| | ||||| Sbjct 2826 CGGATCGCGTCTTATGGAAGTCTTGAAGATGTTGCCTGAATTTGGAGGAACTGTGCTAAA 2885 Query 2633 AGAAACACCAACTGAGCTGCAAAGGGAATCACTGTTGAGACATTCTTTTGTTGCAGAGAG 2692 |||| |||| ||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 2886 AGAACCACCTACTGAGCTGCAAAGGGAATCATTGCTGAGACATTCTTTTGTTGCAGAGAG 2945 Query 2693 ATCACCAAAACA-AAATTCCA 2712 |||||||||||| ||| |||| Sbjct 2946 ATCACCAAAACATAAAGTCCA 2966 Score = 468 bits (253), Expect = 2e-130 Identities = 299/320 (93%), Gaps = 7/320 (2%) Strand=Plus/Plus Query 2717 TTCAGAGAGTGAGACTTGGGTCAAGTCAGTGCGTACAGGTGGAAATCTTATTGGGAACCC 2776 |||||||||||||||| ||||||||||||||||||| ||| |||| | |||||||||||| Sbjct 3030 TTCAGAGAGTGAGACTAGGGTCAAGTCAGTGCGTACCGGTCGAAAGCCTATTGGGAACCC 3089 Query 2777 AGAGGACGAGCAAGGA-ACTTCCAAGCCGAGTGACGATGAATTCTTAAGAGGAAAGAGAG 2835 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 3090 AGAGGACGAGCAA-GAGACTTCCAAGCCGAGTGACGATGAATTCTTAAGAGGAAAGAGAG 3148 Query 2836 TTCTTGTGGTCGATGATAACTTTTTAAT-ACGTAAAGTTGCAACAGGAAAGCTAAAGAAG 2894 ||||||||||||||||||||||| || | |||||||||||||||||||||||| |||||| Sbjct 3149 TTCTTGTGGTCGATGATAACTTTATA-TCACGTAAAGTTGCAACAGGAAAGCTGAAGAAG 3207 Query 2895 ATGGGAGTCTCCGAGGTCAAACAATGCGACAGTGGAAAAGAAGCTTTGAGATTAGTCACT 2954 ||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct 3208 ATGGGAGTCTCAGAGGTCGAACAATGCGACAGTGGGAAAGAAGCTTTGAGATTAGTCACT 3267 Query 2955 GAAGGGCTTGCACAAAGAAGAGAAGAACAAGGTTCAATATATAACCTTCCGTTTGACTAC 3014 ||||||||| |||||||| || | |||||||||||| || |||| ||||||||||||||| Sbjct 3268 GAAGGGCTTACACAAAGA-GA-A-GAACAAGGTTCAGTAGATAAACTTCCGTTTGACTAC 3324 Query 3015 ATATTCATGGACTGCCAAAT 3034 |||||||||||||||||||| Sbjct 3325 ATATTCATGGACTGCCAAAT 3344 Score = 265 bits (143), Expect = 2e-69 Identities = 160/168 (95%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 3033 ATTAGGAAAGTGGAGAAAAGTTATGGGGTGCGTATACCAGTTATAGCTGTATCTGGTCAT 3092 |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 3379 ATTAGGAAAGTGGAGAAAAGTTATGGGGTGCGTACACCAATTATAGCTGTATCTGGTCAT 3438 Query 3093 GATCATGGTTCAAG-GGAAGCAAGAGAAACCATTCAAGCTGGAATGGACGCCTTCTTAGA 3151 |||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3439 GATCCTGGTTC-AGAGGAAGCAAGAGAAACCATTCAAGCTGGAATGGACGCCTTCTTAGA 3497 Query 3152 TAAAAACTTGAATCAACTTGCAAATGTCATTAGAGATATCGAAAGCAA 3199 ||||| |||||||||||||||||| ||||||||||| ||||||||||| Sbjct 3498 TAAAAGCTTGAATCAACTTGCAAACGTCATTAGAGAAATCGAAAGCAA 3545 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 161086053973 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5