BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937835

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G47430.1 | Symbols: CKI1 | Signal transduction histidine kin...   652    0.0  


> AT2G47430.1 | Symbols: CKI1 | Signal transduction histidine kinase 
| chr2:19459045-19464087 REVERSE LENGTH=3677
Length=3677

 Score =  652 bits (353),  Expect = 0.0
 Identities = 414/444 (93%), Gaps = 2/444 (0%)
 Strand=Plus/Plus

Query  8     GAGATACACACTCATGTTTCCCAACAAAAGAGGAGCAACACGCAT-AAGGGACCAAGCCG  66
             |||||||||||||||||||||||||||| |||||||||||||||| || | ||||||| |
Sbjct  1146  GAGATACACACTCATGTTTCCCAACAAAGGAGGAGCAACACGCATCAA-GCACCAAGCGG  1204

Query  67    AAAAGACAATGTATCAACTTATTATGGTTACGATATTTTTTGGCTTGGGTTGGCCTTTGT  126
             ||||| |||  |||||||||||| |||||| ||||||| ||||||| ||||||||| | |
Sbjct  1205  AAAAGGCAAAATATCAACTTATTGTGGTTATGATATTTCTTGGCTTCGGTTGGCCTGTAT  1264

Query  127   GGTTTGTGTGGTTTATGATGCAAGCAACAAGGAGAGAGATGCATATGCGTGCAATGCTGA  186
             |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  1265  GGTTTGTGTGGTTTATGATGCAAGCAACAAGGAGAGAGATGCATATGCGTGCAACGCTGA  1324

Query  187   TAAACCAAATGGAAGCAACACAACAGGCTGAGAGAAAGAGCATGAACAAGAGTCAAGCAT  246
             |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct  1325  TAAACCAAATGGAAGCGACACAACAAGCTGAGAGAAAGAGCATGAACAAGAGTCAAGCAT  1384

Query  247   TTGCAAATGCTAGCCACGATAATAGAGGTGCCCTTGCAGGGATCAAAGGTCTGATTGATA  306
             ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct  1385  TTGCAAATGCTAGCCACGATATTAGAGGTGCCCTTGCAGGGATGAAAGGTCTGATTGATA  1444

Query  307   TATGTCGTGATGAAGTTAAACCAGGCTCTGACGTAGATACCACTCTTAGGCAAGTGAATG  366
             |||||||||||| ||||||||| ||||| |||||||| |||||||| |  ||||||||||
Sbjct  1445  TATGTCGTGATGGAGTTAAACCTGGCTCCGACGTAGACACCACTCTCAACCAAGTGAATG  1504

Query  367   TTTGCTCCAAGGATTTGGTTGTTCTGCTCAACTCTGTTTTGGACATGAGCAAAATCGAAA  426
             ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  1505  TTTGCGCCAAGGATTTGGTTGCTCTGCTCAACTCTGTTTTGGACATGAGCAAAATCGAAA  1564

Query  427   GCGGGAAGATGCATTTAGTGAAAG  450
             ||||||||||||| |||||| |||
Sbjct  1565  GCGGGAAGATGCAGTTAGTGGAAG  1588



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23208175914


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5