BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937842
Length=1132
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50070.1 | Symbols: CYCD3;3 | CYCLIN D3;3 | chr3:18565134-18... 1803 0.0
> AT3G50070.1 | Symbols: CYCD3;3 | CYCLIN D3;3 | chr3:18565134-18566780
REVERSE LENGTH=1385
Length=1385
Score = 1803 bits (976), Expect = 0.0
Identities = 1074/1121 (96%), Gaps = 7/1121 (1%)
Strand=Plus/Plus
Query 1 CTTCTTCTCGGAAGAGAAAGATCATGGCTTTAGAAGAAGAAGAAGAGAGTCAAAACGCAC 60
||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 89 CTTCTTCTCGGAAGAGAAAAATCATGGCTTTAGAAGAGGAGGAAGAGAGTCAAAACGCAC 148
Query 61 CGTTTTGTGTTCTTGATGGTCTTTTCTGTGAGGAAGAGAGTGAGTTTGAGGAACAAGAAG 120
||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||
Sbjct 149 CGTTTTGTGTTCTTGATGGTCTTTTCTGTGAGGAAGAGAGTGAGTTTCACGAAC---AAG 205
Query 121 CAGATTTGTGCGACGAGAGTGTCAAAAAGTTTCCTTTTTTACATCTGGGTTTGTCTGATC 180
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 206 TAGATTTGTGCGACGAGAGTGTTGAAAAGTTTCCTTTTTTAAATCTGGGTTTGTCTGATC 265
Query 181 ATGATATGTTTTGGGATGATGATGAGTTATTAACTTTGATTTCGAAACAAGAACCGTGTC 240
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 266 ATGATATGTTGTGGGATGATGATGAGTTATCAACTTTGATTTCGAAACAAGAACCGTGTC 325
Query 241 TTTATGACGAACTCTTAGATGATGAGTTTCTGGTTCTGTGTCGTGAAAAGGCTCTTGATT 300
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 326 TTTATGACGAAATCTTAGATGATGAGTTTCTGGTTTTGTGTCGTGAAAAGGCTCTTGATT 385
Query 301 GGATTTTCAAAGTGAAATCTCATTATGGGTTTAATTCATTGACGGCTCTTTTAGCTGTTA 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 GGATTTTTAAAGTGAAATCTCATTATGGGTTTAATTCATTGACGGCTCTTTTAGCTGTTA 445
Query 361 ATTACTTCGATAGGTTTATTACAAGCATGAAGTTTCAGACAGATAAGCCATGGATGTCTC 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 446 ATTACTTCGATAGGTTTATTACAAGCAGGAAGTTTCAGACAGATAAGCCATGGATGTCTC 505
Query 421 AGCTTACTGCTTTGGCTTGTCTATCTTTAGCTGCTAAGGTTGAAGAGATCCGAGTTCCTT 480
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 506 AGCTTACTGCTTTGGCTTGTCTGTCTTTAGCTGCTAAGGTTGAAGAGATCCGTGTTCCTT 565
Query 481 TACTCTTAGATTTTCAAGTGGAAGAAGCAAGATATGTCTTTGAGGCTAAGACTATACAGA 540
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 566 TTCTCTTAGATTTTCAAGTGGAAGAAGCAAGATATGTCTTTGAAGCTAAGACTATACAGA 625
Query 541 GAATGGAGCTTCTTGTTTTGTCTACTCTTGAGTGGAAGATGCATCCTGTGACTGCAATCT 600
||||||||||||||||| ||||||||||||| |||| |||||||||||||||| ||||||
Sbjct 626 GAATGGAGCTTCTTGTTCTGTCTACTCTTGACTGGAGGATGCATCCTGTGACTCCAATCT 685
Query 601 CGTTTTTCGATCACATTATTCGACGATACAGCTTTAAATCTCATCAGCAATTGGAGTTCT 660
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 686 CGTTTTTCGATCACATTATTCGACGATACAGCTTTAAATCTCATCATCAATTGGAGTTCT 745
Query 661 TGAGTAGATGTGAATCGTTGTTGCTCTCCATTGTTCCTGATTCGAGGTTTCTGAGGTTTA 720
|||||||||||||||| || || ||||||||| ||||||||||||| |||||||| ||||
Sbjct 746 TGAGTAGATGTGAATCTTTATTACTCTCCATTATTCCTGATTCGAGATTTCTGAGTTTTA 805
Query 721 GTCCTTCTGTGTTAGCCACTGCAATAATGGTCTCTGTCATTAGAGATTTCAAGATGTGTG 780
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 806 GTCCTTCTGTGTTAGCCACTGCAATAATGGTCTCTGTTATTAGAGATTTGAAGATGTGTG 865
Query 781 ACGAAGCTG-ATTACCAATCTCAGCTCATGACTCTACTCAAAGTTGATTCGGAGAAAGTA 839
||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 866 ACGAAGCTGTAT-ACCAATCTCAGCTCATGACTCTACTCAAAGTTGATTCGGAGAAGGTA 924
Query 840 AATAAATGCTATGAGTTAGTGTTAGACCACAGTCCAAGCAAGAAAAGGATGATGAATTGG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 AATAAATGCTATGAGTTAGTGTTAGACCACAGTCCAAGCAAGAAAAGGATGATGAATTGG 984
Query 900 ATGCAACAACCAGCTAGTCCGATCGGGGTGTTTGATGCGTCATTCAGCTCTGATAGCTCG 959
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 985 ATGCAACAACCCGCTAGTCCGATCGGTGTGTTTGATGCGTCATTCAGTTCTGATAGCTCG 1044
Query 960 AATGAGTCGTGGGTTGTGTCTGCTTCTGCTTCAGTGTCGTATTCACCATCTTCGGAGCCT 1019
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1045 AATGAGTCGTGGGTTGTGTCTGCTTCTGCTTCAGTGTCGTCTTCACCATCTTCAGAGCCT 1104
Query 1020 TTGCTCAAGAGGAGAAGAGTGCAAGAGCAGCAGATGAGGTTATCTTCAATAAACCGAATG 1079
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1105 TTGCTCAAGAGGAGAAGAGTGCAAGAGCAGCAGATGAGGCTATCTTCAATAAACCGAATG 1164
Query 1080 TTTCTT-GATGTGCTTAGTAGTAGCCCTCGCTAATAATGTC 1119
||| || ||||||||||||||||| ||||||||||||||||
Sbjct 1165 TTT-TTCGATGTGCTTAGTAGTAGTCCTCGCTAATAATGTC 1204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55521802770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5