BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937856
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50220.1 | Symbols: | Protein of unknown function (DUF579) ... 1574 0.0
> AT3G50220.1 | Symbols: | Protein of unknown function (DUF579)
| chr3:18617424-18618729 REVERSE LENGTH=1306
Length=1306
Score = 1574 bits (852), Expect = 0.0
Identities = 946/992 (95%), Gaps = 4/992 (0%)
Strand=Plus/Plus
Query 1 AGAAGAAGAAGAAGAGTGAACAATGAAGAACGGATCAGGGAACACGAACACGAAGCTAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 68 AGAAGAAGAAGAAGAGTGAACAATGAAGAACGGATCAGGGAACACGAACACAAAACTAAT 127
Query 61 CCTTCTTCATCCTTACATCCAAAAACAAACGAGCACGACTCGTTTATGGCTTCTCGCTTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 CCTTCTTCATCCTTACATCCAAAAACAAACGAGCACGACTCGTTTATGGCTTCTCGCTTT 187
Query 121 CGTCTCTTTCTTCACCATCGTGTTTCTCCTAACTCTCCTCTACACTAGAGACACAATCCC 180
|||||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||
Sbjct 188 CGTCTCTTTCTTCACCATAGTTTTTCTCCTCACTCTTCTCTACACTAGAGACACAATCCC 247
Query 181 TTCCAAAAACACCTCCGTCGCTGCCA-CCGTAGCCGCCGTCGTCACCGGAGGATC-ACCA 238
||||||||||||||||||||| || | ||||||| || ||||||||||||||||| || |
Sbjct 248 TTCCAAAAACACCTCCGTCGCCGC-AGCCGTAGCTGCAGTCGTCACCGGAGGATCCAC-A 305
Query 239 TCTTCATCATCATCTCCCATCTCCAACTCTAACTTACCAACGAGTGCAATCAACGCATTG 298
||||| |||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 306 CCTTCAGCATCATCTCCCATCTCCAACTCCAACTTACCAACTAGTGCAATCAACGCTTTG 365
Query 299 CTTCACTACGCGTCAAGATCCAACGATAGTTTCCACATGTCTTACGGAGAGATGAAATCT 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 CTTCACTACGCGTCAAGATCCAACGATAGTTTCCACATGTCTTACGGAGAGATGAAATCA 425
Query 359 ATCTCCGACGTCCTCCGCCGCTGCGCTCCACCGTGTAATCTCCTCGTTTTCGGACTAACA 418
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 426 ATCTCTGACGTCCTCCGCCGCTGCGCTCCACCGTGTAATCTTCTCGTTTTCGGACTCACA 485
Query 419 CACGAGACTCTCCTTTGGAAATCGTTAAACCACAACGGTAGAACAGTCTTCATCGAGGAG 478
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 486 CACGAGACTCTCCTTTGGAAGTCGTTAAACCACAACGGTAGAACAGTGTTCATCGAGGAG 545
Query 479 AATCGTTACTACGCGGCTTACTTTGAAGAAATCCACCCGGAGATAGACGTTTTCGACGTT 538
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 546 AATCGTTACTACGCGGCTTACTTCGAAGAAATCCACCCGGAGATCGACGTTTTCGACGTT 605
Query 539 CAATACACGACGAAAGCTCACGAGGCCGGAGAGCTCGTTACCGCGGCTAAAGAAGCCGCG 598
||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 606 CAATACACGACAAAAGCTCACGAAGCTGGAGAGCTCGTCACCGCGGCTAAAGAAGCCGCG 665
Query 599 GGAAACGAGTGTCGTCCCGTGCAAAATCTTCTCTTCTCAGATTGTAAACTAGGTCTTAAT 658
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct 666 GGAAACGAGTGTCGTCCTGTGCAAAATCTTCTCTTCTCAGATTGTAAATTAGGTCTCAAT 725
Query 659 GATTTGCCTAATCACGTCTACGATGTTGATTGGGATGTAATCTTTGTGGACGGGCCACGT 718
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 GATTTGCCTAATCATGTCTACGATGTTGATTGGGATGTAATCTTTGTGGACGGGCCACGT 785
Query 719 GGCGACGCTCACGAAGGACCGGGGAGGATGTCGTCGATATTCACGGCGGCGGTTCTTGCT 778
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 786 GGCGATGCTCACGAAGGACCGGGGAGGATGTCGTCGATTTTCACGGCGGCGGTTCTTGCT 845
Query 779 CGAAGCAAAAAGGGAGGGAATCCGAAGACGCATGTGTTCGTGCATGATTATTATAGAGAC 838
|| ||||||||||| |||| |||||||||||||||||| |||||||| ||||||||||||
Sbjct 846 CGGAGCAAAAAGGGCGGGACTCCGAAGACGCATGTGTTTGTGCATGACTATTATAGAGAC 905
Query 839 GTTGAGAGGCTTTGTGGTGATGAGTTCTTGTGCCGTGAGAATCTTGTTGAGTCTAATGAT 898
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 906 GTTGAGAGGCTTTGTGGTGATGAGTTCTTGTGCCGAGAGAATCTTGTTGAGTCTAATGAT 965
Query 899 TTGCTTGCACACTACGTGTTGGATAAGGTGGATAAAAACAGCACGACGTTTTGCAATGGT 958
||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||
Sbjct 966 TTGCTTGCACACTACGTGTTGGATAAGATGGATAAAAACAGCACAAAGTTTTGCAATGGT 1025
Query 959 CGTAAGAAACGTTCGGTTTCGTCTTAGTCTTA 990
||||||||||||||||||||||||| ||||||
Sbjct 1026 CGTAAGAAACGTTCGGTTTCGTCTTTGTCTTA 1057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5