BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937864
Length=1031
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50295.1 | Symbols: | pseudogene, hypothetical protein | ch... 1096 0.0
AT2G20720.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 80.5 3e-14
> AT3G50295.1 | Symbols: | pseudogene, hypothetical protein |
chr3:18641798-18642664 FORWARD LENGTH=867
Length=867
Score = 1096 bits (593), Expect = 0.0
Identities = 790/883 (89%), Gaps = 21/883 (2%)
Strand=Plus/Plus
Query 132 CAAGAATGAGGAAGATTTGCTCCGGAAGCAGGAGATCGAAAGAAGAAAAGAAAAATTACG 191
||||| ||||||||||||||||||| |||||||| | ||||||| | ||||||| ||||
Sbjct 1 CAAGAGTGAGGAAGATTTGCTCCGGGAGCAGGAGCGCAAAAGAAGGATAGAAAAACTACG 60
Query 192 GAAATATATACAGAACCGAACAAAACGTTCAGAACTAAAAAGCCTTTATGATCAGTGTGA 251
||||| ||| | | || | || ||||||||| ||| | || | ||||| | ||
Sbjct 61 GAAATTTATGC-G-GCC---C----CGGACAGAACTAAGAAG-CATT-T-ATCAGCGCGA 108
Query 252 GGTGGACGGTGAAAAGATGGAATCCGAAGGAGTACCGATTCACAAGATGTTAGCTTCTTA 311
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 109 GAAGGACGGTGAAAAGATGGAATCCGAAGGAGTACCGATTCACAAGATGTTAGCTTCTTA 168
Query 312 CATATCA-GAATTTGACGTAACGGGAATGGAAAAGTATTTGAACAAGTTAGAGGAGAAAA 370
||||| | | ||||||| ||| ||||| |||||||||||||||||||||||||||||||
Sbjct 169 CATAT-ATGTATTTGACCTAAATGGAATTGAAAAGTATTTGAACAAGTTAGAGGAGAAAA 227
Query 371 GACCAAAGGGATTTGCTTTAGCTATGCTGCGTAAGTCAGAGCCGTTACTGGTTACTAATG 430
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 228 GACCAAAGGGATTTGCTTTAGATATGCTGCGTAAGTCAGAGCCGTTACTGGTTACTAATG 287
Query 431 AGTATTACGACATCCTCGGACCAATTAGAGTCTTTGGGGCTCTCAGG-ATACTGTATAGG 489
|||||||| | |||||||||||| ||||||||||| || ||||||| | | |||||| |
Sbjct 288 AGTATTACAATATCCTCGGACCATTTAGAGTCTTTCGGATTCTCAGGGAAA-TGTATAAG 346
Query 490 CGTTTCGGAGAAAAGGAAGACCTT-CGGCGTTTGTGGAACTTAGCTAGGGACATGAAAGC 548
|||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||
Sbjct 347 CGTTTCGGAGAAAAGGAAGACCTTACGCCGTTTGTGGAACTTAGCTAAGGACATGAAAGT 406
Query 549 GTTTAAGTTCATCAATGAATATATTTGCACGATTCTGGCGTTTTGGTTGAAAGACGATAT 608
|| |||| |||||||||||||| ||||| |||||||||||| ||||||||||| |||||
Sbjct 407 GTCTAAGGACATCAATGAATATAGTTGCATGATTCTGGCGTTGTGGTTGAAAGATGATAT 466
Query 609 CGAAGGGGCTCACCAAGTTCTTGAAGAGTGGGATACCGGAGAACATCGTTATTTTGAA-G 667
||||||||||||| || ||||||||||||||||||||||||| |||| | ||| || |
Sbjct 467 CGAAGGGGCTCACGAACTTCTTGAAGAGTGGGATACCGGAGAGCATCATC-TTTCCAAAG 525
Query 668 TCAAGATAAAAGATATTCTGGATTTT-TCTCAGTGCAGAAAACTTGTGATACAAGGCACT 726
||||| |||| |||||||||| |||| | | | |||||||||||||| |||||||||||
Sbjct 526 TCAAGCTAAACGATATTCTGGGTTTTGTTT-ACTGCAGAAAACTTGTAATACAAGGCACC 584
Query 727 GAGTTGATGGTGAATGGCATGTTCGAAGAACATAAGGAAGAGGAGGAGAATAAGAAGACG 786
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 585 GAGTTGATGGTGAATTATATGTTCGAAGAACATAAGGAAGAGGAGGAGAAGAAGAAGACG 644
Query 787 GCAATGGAGGTGAGGCTTAACGGATGGGACCCAAAGAAAAATCTTGCTTTGTCTGCGTAC 846
|||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 645 GCAATGGAGGTGAGGCGTAACGGATGGGACCCCAAGAAAAATCTTGCATTGTCTGCGTAC 704
Query 847 GCATGTTTTCAATATGTGGAGGGCCATAGAGACATTGAGAGTACAGTTGATGTTTTGAGA 906
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 705 GCATGTGTTCAATATGTGGAGGGCCAGAGAGACATTGAGAGTACAGTTGATGTTTTGAGA 764
Query 907 TTGTTGGGGAAGCGTGAGTCACAAGATGCTATTATGGGTGAAGACCGATTGAGTAGGAAA 966
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||
Sbjct 765 TTGTTGGGGAAGCGTGAGCCACAAGATGCTATTATGGATGAAGACCGATTGAGTAAGAAA 824
Query 967 TTGGTGGAGGCAATGAGAGGAGGAGGATACGTTGGTGAAGTTT 1009
|||| |||||||||||||||||||||||||||||||| ||||
Sbjct 825 ATGGTAGAGGCAATGAGAGGAGGAGGATACGTTGGTGATGTTT 867
> AT2G20720.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr2:8927822-8930112 REVERSE LENGTH=2213
Length=2213
Score = 80.5 bits (43), Expect = 3e-14
Identities = 119/154 (77%), Gaps = 12/154 (8%)
Strand=Plus/Plus
Query 856 CAATATGTGGAGGGCCATAGAGACATTGAGAGTACAGTTGATGTTTTGAGA-TTGTTGGG 914
|||||||||||||| | |||||||| |||||||||| || || ||||| || ||
Sbjct 1868 CAATATGTGGAGGGTCGGAGAGACATGGAGAGTACAGCCGACATTCTGAGACTT-CTGAA 1926
Query 915 GAAGCGTGAGTCACAAGATG-C-TAT--TATGGGTGAAGACCGATTGAGTAGGAA-ATTG 969
||||| ||| |||| || | || |||| || |||||||||| ||| | ||
Sbjct 1927 TAAGCGAGAG---CAAG-TGTCGCATGCAATGGACAAAAACCGATTGAGCCTGAAGA-TG 1981
Query 970 GTGGAGGCAATGAGAGGAGGAGGATACGTTGGTG 1003
||||||||||||||||||||||||||||||||||
Sbjct 1982 GTGGAGGCAATGAGAGGAGGAGGATACGTTGGTG 2015
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50535551882
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5