BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937866
Length=592
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50300.1 | Symbols: | HXXXD-type acyl-transferase family pr... 340 7e-93
> AT3G50300.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr3:18643955-18645406 FORWARD LENGTH=1452
Length=1452
Score = 340 bits (184), Expect = 7e-93
Identities = 394/488 (81%), Gaps = 44/488 (9%)
Strand=Plus/Plus
Query 33 TGTGACCGTGATTTCTTCGAGCATTGTTCAACCTGGAAACATCACTCAATCGAGTCGAGG 92
||||||||||||||||||||||||||||||||| |||||| || || ||| |||| ||
Sbjct 97 TGTGACCGTGATTTCTTCGAGCATTGTTCAACCCGGAAACGCCAGGCATTCGGGTCG-GG 155
Query 93 AAA-GATCCATCTC-CT---TC---T-TTA---T-CTCGGT-T-A----CCCTCAAAGAG 133
||| |||||||||| || || | ||| | ||| | | | ||||||||||
Sbjct 156 AAAAGATCCATCTCACTCCATCCGATCTTAGCCTTCTCTATCTTAATTACCCTCAAAGAA 215
Query 134 GTCTCCTCTTCCCCAAACCAGACCCGGAAACCCGTTTCATCTCTCGGTTAAAATCCTCTC 193
||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||
Sbjct 216 GTCTCCTCTTCCCCAAACCCTACCCGGAAACCCGGTTCATCTCTCGGTTAAAGTCCTCTC 275
Query 194 TCTC--CGCTGCTCTAGACATCTACTTCCCCTTAGCTG-TCGTCTTGTCAAAGTGAACAA 250
|||| || | ||||||| ||||||||||||||||||| ||||||||||||||| |||||
Sbjct 276 TCTCTACG-T-CTCTAGAGATCTACTTCCCCTTAGCTGGTCGTCTTGTCAAAGTCAACAA 333
Query 251 TCACGAAGAGAACACGGTGTCGTTTTACATCGACTGCAACGATGACGGCTTAGGT-TCCA 309
|| ||||| || ||||||||||||||||||||||| |||| | | | | ||| || |
Sbjct 334 CCATGAAGACAATACGGTGTCGTTTTACATCGACTGTGACGACGGCCG-T--GGTGTC-A 389
Query 310 AATTCGTCCATGCCATAGCCGAATCGGTCTATGTGAGTGATCTTCTCCAACCTGATGGCT 369
|||| |||||||| ||||||||||| |||| || || ||| | || |||||| ||||||
Sbjct 390 AATTTGTCCATGCTATAGCCGAATCTGTCTCGGTAAGCGATATCCTTCAACCTCATGGCT 449
Query 370 CTGTTTCTGACTCTTTCAAACATTT-TTTCCC-TGCGAACGAT-TTC-AAGATAATCGAA 425
||||| |||||| ||||| | ||| |||||| || |||| | || ||| | ||||
Sbjct 450 CTGTTCCTGACTTTTTCAGGCTTTTCTTTCCCATG--AACGGTGTTAGAAGC-A-TCGAC 505
Query 426 GG-CATCTC-GAAGCCCTTGCTTGCTATT-CAAGTCACCGAGATGAAAGATGGAGTCTTC 482
|| | |||| || |||||| |||||| || |||||||||||||| ||||||||| || ||
Sbjct 506 GGGC-TCTCAGA-GCCCTTACTTGCT-TTACAAGTCACCGAGATAAAAGATGGAATCGTC 562
Query 483 ATCAGTTT 490
|| |||||
Sbjct 563 ATTAGTTT 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28482761349
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5