BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937867
Length=1072
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50310.1 | Symbols: MAPKKK20 | mitogen-activated protein kin... 1402 0.0
> AT3G50310.1 | Symbols: MAPKKK20 | mitogen-activated protein kinase
kinase kinase 20 | chr3:18648151-18649521 REVERSE LENGTH=1371
Length=1371
Score = 1402 bits (759), Expect = 0.0
Identities = 975/1079 (90%), Gaps = 15/1079 (1%)
Strand=Plus/Plus
Query 2 TAAAAG-TTGTTGTTTCAATTTC-ATGGAGTGGGTTCGAGGAGAAACAGTCGGATTCGGA 59
|||||| || ||||||||||||| |||||||||||||||||||||||| | || ||||||
Sbjct 175 TAAAAGCTT-TTGTTTCAATTTCAATGGAGTGGGTTCGAGGAGAAACAATTGGGTTCGGA 233
Query 60 ACTTTTTCTACTGTAAGTGTAGCAACAAA-TACTAGAGACTCCGGCGACTTCCCGGCTA- 117
|| || |||||||| ||| ||| ||||| | ||||| ||||||||||||| || || |
Sbjct 234 ACCTTCTCTACTGTCAGTACAGCGACAAAGT-CTAGAAACTCCGGCGACTTTCCTGC-AC 291
Query 118 TTATGGCCGTGAAGTCGTCAGATTCTTACGGCGCCGCTTCCCTCTCGAAGGAGAAATCGG 177
|||| || ||||||||| | ||| |||| ||||||||||| ||||| || ||||||||||
Sbjct 292 TTATCGCTGTGAAGTCGACGGATGCTTATGGCGCCGCTTCACTCTCCAACGAGAAATCGG 351
Query 178 TGTTGGATTCACTCGGTGATTGCCCTGAGATCGTACGATGTTACGGTGAGGA-TCTAACG 236
|||||||||||||||||||||| ||||||||| |||| |||||||| ||||| || ||||
Sbjct 352 TGTTGGATTCACTCGGTGATTGTCCTGAGATCATACGGTGTTACGGCGAGGATTC-AACG 410
Query 237 GTGGAGAACGGAGAAGTGATGCATAACTTGTTATTAGAGTACGCTTCAAGAGGAAGCTTA 296
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 411 GTGGAGAACGGAGAAGAGATGCATAACTTGTTATTAGAGTACGCTTCGAGAGGAAGCTTA 470
Query 297 GCGA-CT-CATGTTAAGAAACTTGGCGGTGAGGGTTTACCGGAGTCCACCGTACGCCGCC 354
|||| | |||| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 471 GCGAGTTACATG--AAGAAACTTGGCGGTGAGGGTTTACCGGAGTCCACCGTGCGTCGCC 528
Query 355 ACACAGGATCGGTGCTTCGAGGGTTACGTCACATCCACGC-AATAGGGTTTGCTCACTGC 413
|||||||||| ||||||||||||||||||||||||||||| || ||||||||| ||||||
Sbjct 529 ACACAGGATCAGTGCTTCGAGGGTTACGTCACATCCACGCTAA-AGGGTTTGCACACTGC 587
Query 414 GATATTAAACTCGGGAATATTCTGTTATTCAACGACGGCGCCGTTAAGATTGCCGATTTC 473
||||| ||||||| ||||||||||||||| ||||||||| | ||||| ||||||||||||
Sbjct 588 GATATAAAACTCGCGAATATTCTGTTATTTAACGACGGCTCTGTTAAAATTGCCGATTTC 647
Query 474 GGGTTGGCTAGGAGAGTAGATGGAGATTTAACGCCGTCaaaaaaaaGTGTGGAGATTAGA 533
|| ||||| | |||||| || |||||||||||| ||| || |||||||||||||||||||
Sbjct 648 GGTTTGGCGATGAGAGTTGACGGAGATTTAACGGCGTTAAGAAAAAGTGTGGAGATTAGA 707
Query 534 GGGACGCCGTTATATATGGCGCCGGAATCTGTTAATGAAAACGAGTATGGATCAGCGGCT 593
|||||||||||||| ||||| ||||||| ||||||||| |||||||||||||||||||||
Sbjct 708 GGGACGCCGTTATACATGGCACCGGAATGTGTTAATGATAACGAGTATGGATCAGCGGCT 767
Query 594 GACGTGTGGGCTTTAGGATGTGCTGTAGTTGAGATGTTTAGTGGCAAAACGGCGTGGAGT 653
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 768 GACGTGTGGGCTTTAGGATGTGCTGTAGTTGAGATGTTTAGTGGCAAAACGGCATGGAGT 827
Query 654 GTGAAAGAAGGATCACACTTCATGTCGCTTTTGATACGTATCGGTGTTGGTGATGAGTTA 713
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 828 GTTAAAGAAGGATCACACTTCATGTCGCTTTTGATACGTATAGGTGTTGGTGATGAGTTA 887
Query 714 CCGAAGATTCCAGAGATGTTGTCGGAAGAAGGAAAAGATTTTTTGTTGAAGTGTTTTGTT 773
||||||||||||||||||||||| |||||||| || |||||||||| |||||||||||||
Sbjct 888 CCGAAGATTCCAGAGATGTTGTCCGAAGAAGGCAAGGATTTTTTGTCGAAGTGTTTTGTT 947
Query 774 AAAGATCCTGTGAAAAGATGGACGGCTGAGATGCTTTTAAACCATTCGTTCGTAGCCGTT 833
|||||||| | ||||||||||||||||||||||||||| ||||||||||| ||| || ||
Sbjct 948 AAAGATCCAGCGAAAAGATGGACGGCTGAGATGCTTTTGAACCATTCGTTTGTAACCATT 1007
Query 834 GATCTTGAAGATTATCATCGAGAAGACTTCGTTGTGAAGTTTAAAGAAGAGGAAAAAGTA 893
|||||||||||| |||| |||||| |||||||||||||| |||| || ||||| ||||||
Sbjct 1008 GATCTTGAAGATGATCACCGAGAAAACTTCGTTGTGAAGGTTAAGGATGAGGATAAAGTA 1067
Query 894 TTGATGTCTCCAAAGTGTCCTTTTGAGTTTCATGATTGGGAATCTTTTACATCGGATTCA 953
|||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||
Sbjct 1068 TTGATGTCTCCAAAGTGTCCTTTTGAGTTTGATGATTGGGATTCTTTTACATTGGATTCA 1127
Query 954 CACACGTCGTTGGATTCTCCGGTCGAGAGACTTGGGAGTTTGGTTAGTGGTTCGAGCCCT 1013
|| | ||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1128 AACCCCTCGTTTGATTCTCCGGTGGAGAGACTTGGGAGTTTGGTTAGTGGTTCGATCCCT 1187
Query 1014 GATTGGTCTGTCGGCGGGAGTTGGGTCACGGTCCGGTAACGGGAGTGATATAAAAACAG 1072
|||||||||||||| ||||||||| | || ||||||| | | ||| |||| |||||||
Sbjct 1188 GATTGGTCTGTCGGTGGGAGTTGGCTTACAGTCCGGTGATGAAAGTTATATGAAAACAG 1246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52509770070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5