BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937876

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42480.1 | Symbols:  | TRAF-like family protein | chr2:17685...   102    3e-21
  AT1G25260.1 | Symbols:  | Ribosomal protein L10 family protein ...  99.0    4e-20


> AT2G42480.1 | Symbols:  | TRAF-like family protein | chr2:17685805-17689928 
REVERSE LENGTH=2309
Length=2309

 Score =  102 bits (55),  Expect = 3e-21
 Identities = 73/81 (90%), Gaps = 3/81 (4%)
 Strand=Plus/Plus

Query  417   TTTGAAGACAAATCTTGAGGAGGTGTCCTTGGAGAGGAAGAAATCAGACGATGCTTGAT-  475
             ||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| || 
Sbjct  2117  TTTGAAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAATCAGACGATGCTT-ATA  2175

Query  476   G-TCTCGGGTCCAACAACTCG  495
             | ||||||||| | |||||||
Sbjct  2176  GGTCTCGGGTCTACCAACTCG  2196


> AT1G25260.1 | Symbols:  | Ribosomal protein L10 family protein 
| chr1:8853959-8855872 REVERSE LENGTH=1018
Length=1018

 Score = 99.0 bits (53),  Expect = 4e-20
 Identities = 80/91 (88%), Gaps = 10/91 (11%)
 Strand=Plus/Plus

Query  1    TTCTTCCTAGGTTCGAACAAAGTGATGCAGGTTGCTCTTGGTCGT---G-A-----TGAA  51
            |||||||||||||||||||||||||||||||||||||||||||||   | |     ||||
Sbjct  302  TTCTTCCTAGGTTCGAACAAAGTGATGCAGGTTGCTCTTGGTCGTTCTGCAGAAGATGAA  361

Query  52   TTCCGTTCTGGTATCTACAA-GTCTCCAAGC  81
             ||||||||||||||||||| ||||||||||
Sbjct  362  CTCCGTTCTGGTATCTACAAAGTCTCCAAGC  392



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23610049090


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5