BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937882

Length=616
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G50420.1 | Symbols:  | Pentatricopeptide repeat (PPR) superf...   462    1e-129


> AT3G50420.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfamily 
protein | chr3:18710871-18713649 REVERSE LENGTH=2385
Length=2385

 Score =  462 bits (250),  Expect = 1e-129
 Identities = 303/329 (92%), Gaps = 2/329 (1%)
 Strand=Plus/Plus

Query  280  TGAAGCCCAATAGCTCGACTTTCACTAGCTTAGTGCAAGTATGTACTGTGCTTGAGGATG  339
            ||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct  584  TGAAGCCCAATAGTTCAACTTTCACTAGCTTAGTGCAAGTATGTGCTGTGCTTGAGGATG  643

Query  340  TTTTGATGGGGTCATTACTACATTCGCATACTATAAAGCTTGGATT-TTCAGGTAATGTG  398
            |||| |||||||||| | || | ||||| | |||||||||||| || ||||| |||||| 
Sbjct  644  TTTTAATGGGGTCATCATTAAACTCGCAGATTATAAAGCTTGG-TTATTCAGATAATGTA  702

Query  399  GTTGTCCAGACATCGGTTTTGGGGATGTACTCCAGTTGCGGGGACTTAGAATCTGCGAGG  458
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  703  GTTGTCCAGACATCGGTTTTGGGGATGTACTCTAGTTGCGGGGACTTAGAATCTGCGAGG  762

Query  459  AGAATCTTTGACTGTGTAAATGACGGAGATGCGGTTGCTTGGAACGCAATGATAGTTGGG  518
            ||||| ||||||||||||||| |  |||||||||||||||||||| ||||||||||||||
Sbjct  763  AGAATATTTGACTGTGTAAATAATAGAGATGCGGTTGCTTGGAACACAATGATAGTTGGG  822

Query  519  AGTTTGAGAAATGATAAGATAGAAGATGGGCTTGTGCTCTTTAGAAGCATGTTGATGTCT  578
            ||||||| ||||||||||||||||||||||||| || ||||| ||| |||||||||||||
Sbjct  823  AGTTTGAAAAATGATAAGATAGAAGATGGGCTTATGTTCTTTCGAAACATGTTGATGTCT  882

Query  579  GGTGTTGATCCAACGTAGTTCACGTATTC  607
            ||||||||||||||| |||||||||||||
Sbjct  883  GGTGTTGATCCAACGCAGTTCACGTATTC  911


 Score =  342 bits (185),  Expect = 2e-93
 Identities = 235/259 (91%), Gaps = 3/259 (1%)
 Strand=Plus/Plus

Query  14   CTTTTTTATGCCACTTAACGAAGTAGCTTCTTCCGCTGTACAACTTACACGGAAATGCGT  73
            ||||||||||||||| |||||| |||||||||||| |||| |||||||||||||||||||
Sbjct  255  CTTTTTTATGCCACTGAACGAAATAGCTTCTTCCGTTGTAGAACTTACACGGAAATGCGT  314

Query  74   CTCGAT---GGCGCTAAAACAGGCGCGTCAGCTCCACGCTATCATCCTCACTGCCGGCGC  130
            ||||||   ||  ||||||| |||||||||| |||||||| || ||||||| ||||||||
Sbjct  315  CTCGATCACGGTACTAAAACGGGCGCGTCAGATCCACGCTCTCGTCCTCACCGCCGGCGC  374

Query  131  TGGCTCCGCTTCCGAGTCTCCGTACGCAAATAACAATCTCATCTCAATGTATGTGAGGTG  190
            |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  375  TGGCGCCGCTACCGAGTCTCCGTACGCAAATAACAATCTCATCTCAATGTATGTGAGGTG  434

Query  191  TGGTTCACTTGAACAAGCACGGAAACTGTTCAACAAAATGCCTGAGAGAAACGTAGTTTC  250
            ||||||||| ||||||||||||||| ||||| ||||||||||| | ||||||||||||||
Sbjct  435  TGGTTCACTGGAACAAGCACGGAAAGTGTTCGACAAAATGCCTCACAGAAACGTAGTTTC  494

Query  251  TTACAATGCACTCTATTCG  269
            ||| ||||| || ||||||
Sbjct  495  TTATAATGCGCTTTATTCG  513



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29688380877


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5