BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937906
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50660.1 | Symbols: DWF4, CYP90B1, CLM, SNP2, SAV1, PSC1 | C... 2710 0.0
> AT3G50660.1 | Symbols: DWF4, CYP90B1, CLM, SNP2, SAV1, PSC1 |
Cytochrome P450 superfamily protein | chr3:18814140-18817244
REVERSE LENGTH=1740
Length=1740
Score = 2710 bits (1467), Expect = 0.0
Identities = 1556/1599 (97%), Gaps = 5/1599 (0%)
Strand=Plus/Plus
Query 2 AGAGAGAGAAACTAGCTCCATGTTCGAAACAGAGCATCATActctcttgcctcttcttct 61
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 58 AGAGAGAGAAACTAGCTCCATGTTCGAAACAGAGCATCATACTCTCTTACCTCTTCTTCT 117
Query 62 tctcccatcgcttttgtctcttcttctcttcttgattctcttgAAAAGAAGAAGTAGAAG 121
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 118 TCTCCCATCGCTTTTGTCTCTTCTTCTCTTCTTGATTCTCTTGAAGAGAAGAAATAGAAA 177
Query 122 AACCAGATTCAATCTCCCTCCGGGTAAATCCGGTTGGCCATTTCTTGGTGAAACCATCGG 181
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AACCAGATTCAATCTACCTCCGGGTAAATCCGGTTGGCCATTTCTTGGTGAAACCATCGG 237
Query 182 TTATCTTAAACCGTACACCGCCACAACACTCGGTGACTTCATGCAACAACATGTCTCCAA 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTATCTTAAACCGTACACCGCCACAACACTCGGTGACTTCATGCAACAACATGTCTCCAA 297
Query 242 GTATGGGAAGATATATAGATCGAATTTGTTTGGAGAACCAACGATTGTATCAGCTGATGC 301
|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 298 GTATGGTAAGATATATAGATCGAACTTGTTTGGAGAACCAACGATCGTATCAGCTGATGC 357
Query 302 TGGACTTAATAGATTCATATTACAAAACGAAGGGAGGCTTTTTGAATGTAGTTATCCTCG 361
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct 358 TGGACTTAATAGATTCATATTACAAAACGAAGGAAGGCTCTTTGAATGTAGTTATCCTAG 417
Query 362 AAGTATCGGTGGGATTCTTGGGAAATGGTCGATGCTTGTTCTTGTTGGAGACATGCATAG 421
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 418 AAGTATAGGTGGGATTCTTGGGAAATGGTCGATGCTTGTTCTTGTTGGTGACATGCATAG 477
Query 422 AGATATGAGAAGTATCTCGCTTAACTTTTTAAGTCACGCTCGTCTTAGAACCATTCTACT 481
||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 478 AGATATGAGAAGTATCTCGCTTAACTTCTTAAGTCACGCACGTCTTAGAACTATTCTACT 537
Query 482 TAAAGATGTTGAGAGACATACTTTGTTTGTTCTTGATTCTTGGAAACAACACTCTGTTTT 541
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 538 TAAAGATGTTGAGAGACATACTTTGTTTGTTCTTGATTCTTGGCAACAAAACTCTATTTT 597
Query 542 CTCTGCTCAAGATGAGGCCAAAAAGTTTACGTTTAATCTAATGGCGAAACATATAATGAG 601
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 598 CTCTGCTCAAGACGAGGCCAAAAAGTTTACGTTTAATCTAATGGCGAAGCATATAATGAG 657
Query 602 TATGGATCCTGGAGAAGAGGAAACAGAGCAATTAAAGAAAGAGTATGTAACTTTCATGAA 661
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TATGGATCCTGGAGAAGAAGAAACAGAGCAATTAAAGAAAGAGTATGTAACTTTCATGAA 717
Query 662 AGGTGTTGTCTCTGCTCCTCTCAATCTACCAGGAACTGCTTATCATAAAGCCCTTCAGTC 721
||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 718 AGGAGTTGTCTCTGCTCCTCTAAATCTACCAGGAACTGCTTATCATAAAGCTCTTCAGTC 777
Query 722 ACGAGCAACGATATTGAAGTTCATTgagaggaaaatggaagagagaaaattagatattaa 781
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 778 ACGAGCAACGATATTGAAGTTCATTGAGAGGAAAATGGAAGAGAGAAAATTGGATATCAA 837
Query 782 ggaagaagatc---aagaagaagaagtgaaaacagaggatgaagCAGAGATGAGTAAGAG 838
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GGAAGAAGATCAAGAAGAAGAAGAAGTGAAAACAGAGGATGAAGCAGAGATGAGTAAGAG 897
Query 839 TGATCATGTGAGGAAACAAAGAACAGACGATGATCTTTTGGGATGGGTTTTGAAACATTC 898
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TGATCATGTTAGGAAACAAAGAACAGACGATGATCTTTTGGGATGGGTTTTGAAACATTC 957
Query 899 GAATTTATCGACGGAGCAAATTCTCGATCTCATTCTTAGTTTGTTATTCGCCGGACATGA 958
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 958 GAATTTATCGACGGAGCAAATTCTCGATCTCATTCTTAGTTTGTTATTTGCCGGACATGA 1017
Query 959 GACTTCTTCTGTCGCCATTGCTCTTGCTATCTTCTTCTTGCAAGCTTGCCCTAAAGCCGT 1018
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1018 GACTTCTTCTGTAGCCATTGCTCTCGCTATCTTCTTCTTGCAAGCTTGCCCTAAAGCCGT 1077
Query 1019 TGAAGAGCTTAGGGAAGAGCATCTTGAGATCGCTAGAGCCAAGAAGGAACTAGGAGAGTC 1078
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1078 TGAAGAGCTTAGGGAAGAGCATCTTGAGATCGCGAGGGCCAAGAAGGAACTAGGAGAGTC 1137
Query 1079 AGAATTAAATTGGGATGATTACAAGAAAATGGACTTTACTCAATGTGTTATAAATGAAAC 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 AGAATTAAATTGGGATGATTACAAGAAAATGGACTTTACTCAATGTGTTATAAATGAAAC 1197
Query 1139 TCTTCGATTGGGAAATGTAGTTAGGTTTTTGCATCGCAAAGCACTCAAAGACGTTCGGTA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1198 TCTTCGATTGGGAAATGTAGTTAGGTTTTTGCATCGCAAAGCACTCAAAGATGTTCGGTA 1257
Query 1199 CAAAGGATACGATATCCCTAGTGGGTGGAAAGTGTTACCGGTGATCTCAGCCGTACATTT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CAAAGGATACGATATCCCTAGTGGGTGGAAAGTGTTACCGGTGATCTCAGCCGTACATTT 1317
Query 1259 GGATAATTCTCGTTACGACCAACCTAATCTCTTTAATCCTTGGAGATGGCAACAGCAAAA 1318
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GGATAATTCTCGTTATGACCAACCTAATCTCTTTAATCCTTGGAGATGGCAACAGCAAAA 1377
Query 1319 CAACGG-GACGTCATCGTCAGGAAGTGGTAGTTTTTCGACGTGGGGAAACAACTACATGC 1377
|||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CAACGGAG-CGTCATCCTCAGGAAGTGGTAGTTTTTCGACGTGGGGAAACAACTACATGC 1436
Query 1378 CGTTTGGAGGAGGGCCAAGGCTATGTGCTGGTTCAGAGCTAGCCAAGTTAGAAATGGCAG 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 CGTTTGGAGGAGGGCCAAGGCTATGTGCTGGTTCAGAGCTAGCCAAGTTAGAAATGGCAG 1496
Query 1438 TGTTTATTCATCATCTTGTTCTTAAATTCAATTGGGAATTAGCAGAAGATGATAAACCAT 1497
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TGTTTATTCATCATCTAGTTCTTAAATTCAATTGGGAATTAGCAGAAGATGATAAACCAT 1556
Query 1498 TTGCTTTTCCTTTTGTTGATTTTCCTAACGGTTTGCCTATTAGGGTTTCTCGTATTCTGT 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 TTGCTTTTCCTTTTGTTGATTTTCCTAACGGTTTGCCTATTAGGGTTTCTCGTATTCTGT 1616
Query 1558 aaaaaaaaaaaaaGATGAAAGTATTTTTATTCCCTTCTT 1596
|||||||||||||||||||||||||||||||| ||||||
Sbjct 1617 AAAAAAAAAAAAAGATGAAAGTATTTTTATTCTCTTCTT 1655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78814855650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5