BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937908

Length=520
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G50685.1 | Symbols:  | unknown protein; Has 52 Blast hits to...   756    0.0  


> AT3G50685.1 | Symbols:  | unknown protein; Has 52 Blast hits 
to 46 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes 
- 7 (source: NCBI BLink). | chr3:18834155-18834834 REVERSE 
LENGTH=680
Length=680

 Score =  756 bits (409),  Expect = 0.0
 Identities = 484/521 (93%), Gaps = 1/521 (0%)
 Strand=Plus/Plus

Query  1    TCTTTT-TCTCTCTTTCTCTTAAAATGCTTATACTATCTCCGATCTCTGCCTCTCTTCCA  59
            |||||| ||||||   |||||||||||||| | |||||||||||||||||||||||||||
Sbjct  63   TCTTTTATCTCTCACACTCTTAAAATGCTTCTTCTATCTCCGATCTCTGCCTCTCTTCCA  122

Query  60   CCGTCGTTTCACCGGGGAAATTTGATCCGGCGATCAATTAAGCCGTTAGGTAAGGTCGTA  119
            ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| || 
Sbjct  123  CCGTCGTTTCACCGGGGTAATTTGATCCGGCGATCAATTAAGCCGTTAGGTAGGGTTGTT  182

Query  120  GCAAAGGCCAATGACAATACCGACACTGGCGGACTTCTGGAGACGGCAGCTATAGCCGGT  179
            ||||||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct  183  GCAAAGGCCAAGGACAACACCGACACTGGTGGATTTCTGGAGACGGCAGCTATAGCCGGT  242

Query  180  GGTTTAGTCTCGACGCCGGTTATCGGATGGTCCCTCTACGCTCTCAAAACCACGGGGTGT  239
             ||||||| |||||||||||||| |||||||| |||||| || | || |||||||| |||
Sbjct  243  AGTTTAGTGTCGACGCCGGTTATTGGATGGTCACTCTACACTTTGAAGACCACGGGATGT  302

Query  240  GGCTTACCTCCAGGACCGGCCGGTTCAATCGGAGCGTTGGAAGGTGTGAGCTACTTGGTG  299
            ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  303  GGCTTACCTCCCGGACCGGCCGGTTTAATCGGAGCGTTGGAAGGTGTGAGCTACTTGGTG  362

Query  300  GTGGTTGGCATCGTGGGCTGGTCTCTGTACACCAAGACAAAAACCGGGTCGGGTCTGCCA  359
            |||||||||||||||||||||||| ||||||| || |||||||| ||||| |||||||||
Sbjct  363  GTGGTTGGCATCGTGGGCTGGTCTTTGTACACTAAAACAAAAACTGGGTCAGGTCTGCCA  422

Query  360  AATGGGCCGTTTGGTTTGTTGGGTGCGGTAGAGGGCTTGTCGTATCTGTCGGTTCTAGCC  419
            |||||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct  423  AATGGGCCATTTGGTTTGTTGGGTGCGGTCGAGGGTTTATCGTATCTGTCGGTTCTAGCC  482

Query  420  ATTCTTGTGGTGTTCGGTCTTCAGTTCTTGGATAATGGGTCGGTTCCTGGTCCACTTCCT  479
            |||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct  483  ATTCTTGTGGTGTTTGGTATTCAGTTCTTGGATAATGGGTCGGTTCCAGGTCCACTTCCT  542

Query  480  AGTGACCAGTGTTTTGGTTAACCACGTGTAATGTCGTATAA  520
            |||||||||||||||||||||||||||||||||||||||||
Sbjct  543  AGTGACCAGTGTTTTGGTTAACCACGTGTAATGTCGTATAA  583



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24865902765


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5