BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937916

Length=773
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G50751.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   145    8e-34


> AT3G50751.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:18863690-18863869 
FORWARD LENGTH=180
Length=180

 Score =  145 bits (78),  Expect = 8e-34
 Identities = 85/88 (97%), Gaps = 2/88 (2%)
 Strand=Plus/Plus

Query  102  ATGGGAATCATG--TATGTTACGTACCAGAGATATGTGTGCCCTGGTGTGTGTGCCACAC  159
            ||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1    ATGGGAATCATGTATATGTTACGTACCAGAGATTTGTGTGCCCTGGTGTGTGTGCCACAC  60

Query  160  ACGTGCGACACAGAAACCTCGAGCCGGA  187
            ||||||||||||||||||||||||||||
Sbjct  61   ACGTGCGACACAGAAACCTCGAGCCGGA  88


 Score =  137 bits (74),  Expect = 1e-31
 Identities = 89/95 (94%), Gaps = 6/95 (6%)
 Strand=Plus/Plus

Query  222  ACGTGCGACACAGAAACCTCGA----G-CCGGAGCTATGGGACCCATTAAGCCTTCGAGC  276
            ||||||||||||||||||||||    | ||||||||||||||||||||||||||||||||
Sbjct  61   ACGTGCGACACAGAAACCTCGAGCCGGACCGGAGCTATGGGACCCATTAAGCCTTCGAGC  120

Query  277  CCTACAATGCACGTGACTGTGGGGATCAAAA-TTT  310
            ||||||||||||||||||||||||||||||| |||
Sbjct  121  CCTACAATGCACGTGACTGTGGGGATCAAAAATTT  155


 Score = 52.8 bits (28),  Expect = 5e-06
 Identities = 28/28 (100%), Gaps = 0/28 (0%)
 Strand=Plus/Plus

Query  191  ACGTGCGACACAGAAACCTCGAGCCGGA  218
            ||||||||||||||||||||||||||||
Sbjct  61   ACGTGCGACACAGAAACCTCGAGCCGGA  88



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37575141956


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5