BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937924
Length=1066
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50760.1 | Symbols: GATL2 | galacturonosyltransferase-like 2... 1712 0.0
AT1G19300.1 | Symbols: GATL1, PARVUS, GLZ1, ATGATL1 | Nucleotid... 333 2e-90
AT1G70090.1 | Symbols: GATL9, LGT8 | glucosyl transferase famil... 159 4e-38
AT1G24170.1 | Symbols: GATL8, LGT9 | Nucleotide-diphospho-sugar... 141 1e-32
> AT3G50760.1 | Symbols: GATL2 | galacturonosyltransferase-like
2 | chr3:18868065-18869384 FORWARD LENGTH=1320
Length=1320
Score = 1712 bits (927), Expect = 0.0
Identities = 1014/1056 (96%), Gaps = 6/1056 (1%)
Strand=Plus/Plus
Query 12 CACAAAAATATGCACTCG-AGCTGTT-TATTATCTCTCACCATCCTCGCCGTCTTCACCG 69
|||||||||||||||||| || | || |||||| ||||| |||||||||||| |||||||
Sbjct 1 CACAAAAATATGCACTCGAAG-T-TTATATTATATCTCAGCATCCTCGCCGTATTCACCG 58
Query 70 TCTCTTTCGCTGGCGGCGAGAGATTCAAAGAAGCTCCAAAGTTCTTCAACTCCCCGGAGT 129
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TCTCTTTCGCCGGCGGCGAGAGATTCAAAGAAGCTCCAAAGTTCTTCAACTCCCCGGAGT 118
Query 130 GTCTAACCATCGAAAACGACGACGATTTCGTTTGTTCAGACAAAGCCATCCACGTGGCAA 189
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 119 GTCTAACCATCGAAAACGATGAAGATTTCGTTTGTTCAGACAAAGCCATCCACGTGGCAA 178
Query 190 TGACCTTAGACGCAGCTTACCTGCGTGGCTCAATGGCCGTGATTTTCTCCGTCCTCCAAC 249
||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 179 TGACCTTAGACACAGCTTACCTCCGTGGCTCAATGGCCGTGATTCTCTCCGTCCTCCAAC 238
Query 250 ACTCTTCTTGTCCTCAAAACATTGTTTTCCACTTCGTCACTTCAAAACAAACCCACCGAC 309
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 239 ACTCTTCTTGTCCTCAAAACATTGTTTTCCACTTCGTCACTTCAAAACAAAGCCACCGAC 298
Query 310 TACAAAACTACGTCGTTTCTTCTTTCCCCTACTTGAAATTCCGGATATACCCTTACGACG 369
| ||||||||||||||| ||||||| ||||||||||||||||| || |||||||||||||
Sbjct 299 TCCAAAACTACGTCGTTGCTTCTTTTCCCTACTTGAAATTCCGAATTTACCCTTACGACG 358
Query 370 TAGCCGCCATCTCCGGCCTTATCTCAACCTCCATCCGCTCAGCCCTAGACTCTCCGCTAA 429
||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 359 TAGCCGCCATCTCCGGCCTCATCTCAACCTCCATCCGCTCCGCGCTAGACTCTCCGCTAA 418
Query 430 ACTACGCAAGAAACTACCTCGCCGACATTCTCCCCACATGCCTCTCACGTGTCGTATACC 489
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 419 ACTACGCAAGAAACTACCTCGCCGACATTCTTCCCACGTGCCTCTCACGTGTCGTATACC 478
Query 490 TAGACTCAGATCTCATACTCGTCGACGACATCTCCAAGCTCTTCTCCACTCACATCCCTA 549
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 479 TAGACTCAGATCTCATACTCGTCGATGACATCTCCAAGCTCTTCTCCACTCACATCCCTA 538
Query 550 GCGACGTCGTTTTAGCCGCGCCTGAGTACTGCAACGCAAACTTCACCACTTACTTTACTC 609
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 539 CCGACGTCGTTTTAGCCGCGCCTGAGTACTGCAACGCAAACTTCACGACTTACTTTACTC 598
Query 610 CGACGTTTTGGTCAAACCCTTCTCTTTCCATCACACTCTCCATCAACCGCCGTCG-TCCA 668
||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| | | ||
Sbjct 599 CGACGTTTTGGTCAAACCCTTCTCTCTCCATCACACTATCCCTCAACCGCCGT-GCTACA 657
Query 669 CCGTGTTACTTCAACACCGGAGTGATGGTTATCGAGCTAAAGAAATGGCGCGAAGGAGAT 728
||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||
Sbjct 658 CCGTGTTACTTCAACACCGGAGTGATGGTCATCGAGTTAAAGAAATGGCGAGAAGGAGAT 717
Query 729 TATACGAGGAAGATCATAGAGTGGATGGAGTTACAAAAACGGATAAGAATCTACGAGTTA 788
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TACACGAGGAAGATCATAGAGTGGATGGAGTTACAAAAACGGATAAGAATCTACGAGTTA 777
Query 789 GGCTCTTTACCACCGTTTTTACTTGTCTTCGCCGGAAACATAGCTCCGGTAGATCACCGG 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GGCTCTTTACCACCGTTTTTACTTGTCTTCGCCGGAAACATAGCTCCGGTAGATCACCGG 837
Query 849 TGGAACCAACATGGTTTAGGAGGAGACAATTTCAGAGGACTGTGTCGAGATTTGCATCCA 908
||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 838 TGGAACCAACACGGTTTAGGAGGAGATAATTTTAGAGGACTGTGTCGAGATTTGCATCCA 897
Query 909 GGTCCAGTGAGTTTGTTGCATTGGAGTGGGAAAGGGAAGCCATGGGTAAGGTTAGACGAT 968
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 898 GGTCCAGTGAGTTTGTTGCATTGGAGTGGGAAAGGGAAGCCATGGGTAAGGTTAGATGAT 957
Query 969 GGTCGACCTTGCCCGCTCGATGCACTTTGGGTTCCATATGATTTGTTAGAGTCACGGTTC 1028
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GGTCGACCTTGCCCGCTTGATGCACTTTGGGTTCCATATGATTTGTTAGAGTCACGGTTC 1017
Query 1029 GACCTTATCGAGAGTTAAATTTTAGATGTTAGTTTT 1064
||||||||||||||||||||||||||||||||||||
Sbjct 1018 GACCTTATCGAGAGTTAAATTTTAGATGTTAGTTTT 1053
> AT1G19300.1 | Symbols: GATL1, PARVUS, GLZ1, ATGATL1 | Nucleotide-diphospho-sugar
transferases superfamily protein | chr1:6671137-6672653
REVERSE LENGTH=1517
Length=1517
Score = 333 bits (180), Expect = 2e-90
Identities = 647/864 (75%), Gaps = 65/864 (8%)
Strand=Plus/Plus
Query 178 TCCACGTGGCAATGAC-CTTAGACGCAGCTTACCTGCGTGGCTCAATGGCCG-TGATTTT 235
|||||||||| ||||| | | ||||| || ||| | ||||||||| | |||| || || |
Sbjct 341 TCCACGTGGCGATGACAC-TCGACGCCGCCTACATTCGTGGCTCAGTCGCCGCTG-TTCT 398
Query 236 CTCCGTCCTCCAACACTCTTCTTGTCCTCAAAACATTGTTTTCCACTTCGTCACTTCAAA 295
|||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||
Sbjct 399 CTCCGTCCTCCAACACTCTTCTTGTCCTGAAAACATTGTTTTCCACTTCGTCGCCTCTG- 457
Query 296 ACAAAC-CC-AC-CGACTACAAAACTA-CGTCGTT-TC-T--TCTTTCCCCTAC-TTGAA 346
| | || || | || | || | | | | || | |||||||| ||| ||||
Sbjct 458 -CTTCCGCCGACGCTTCTTCCTTACGAGCCACCATATCCTCCTCTTTCCCTTACCTTGAT 516
Query 347 ATTC-CGGATATACC-CTTACGACGTAGCCGCCATCTC-CGGCCTTATCTCAACCTCCAT 403
||| | | | ||| ||| | |||| || || |||| || ||||||||| |||| ||
Sbjct 517 -TTCACCG-TCTACGTCTT-CAACGTCTCCTCCGTCTCTCG-CCTTATCTCCTCCTCTAT 572
Query 404 CCGCTCAGCCCTAGACTCTCCGCTAAACTACGCAAGAAACTACCTCGCCGA-CATTCTCC 462
|||||| || ||||||| ||| ||||||||||||||| |||||||||||| | | ||||
Sbjct 573 CCGCTCCGCACTAGACTGTCCTTTAAACTACGCAAGAAGCTACCTCGCCGATC-TCCTCC 631
Query 463 C-CACATGCCTCTCAC-GTGTCGTATACCTAGACTCAGATCTCATACTCGTCGACGACAT 520
| | | ||| || | | | ||||| ||||||||||| ||||| || ||||||||||||||
Sbjct 632 CTCCC-TGCGTC-CGCCGCGTCGTCTACCTAGACTCCGATCTGATCCTCGTCGACGACAT 689
Query 521 CTCCAAGCTCTTCTCCACTCACATCCCTAGC-GACG-T-C-GTTTTAGCCGCGCCTGAGT 576
| || ||| | |||| | ||| | || | | | | || | |||||||| || |
Sbjct 690 AGCAAAACTCGCCGCCAC--AGATCTCG-GCCGT-GATTCAGTCCTCGCCGCGCCGGAAT 745
Query 577 ACTGCAACGCAAACTTCACCACTTACTTTAC-TCCGACGTTTTGGTCAAACCCTTCTCTT 635
|||||||||| || ||||| | ||||| || || || || ||||| || || ||||
Sbjct 746 ACTGCAACGCCAATTTCACTTCATACTTCACATCA-ACCTTCTGGTCTAATCCGACTCTC 804
Query 636 TCCATCACACTCTCCATCAACCGCCGTCGTCCACCGTGTTACTTCAACACCGGAGTGATG 695
|| | | || || || ||| ||| | | || ||||||||||| ||||| |||
Sbjct 805 TCTTT-A-AC-CT---TCG-CCGA--TCGGAAAGCATGCTACTTCAACACTGGAGTCATG 855
Query 696 GTTATCGAGCTAAAGAAATGGCGCGAAGGAGATTATACGAGGAAG-ATC-ATAGAGTGGA 753
|| ||||| || ||||||||||| | || ||| | | ||| | ||||||||
Sbjct 856 GTGATCGATCTTTCCCGGTGGCGCGAAGGCGCGTACACGTC-ACGCATCGA-AGAGTGGA 913
Query 754 TGGAGTTACAAAA-ACGGATAAGAATCTACGAG-TTAGGCTCTTTACCACCGTTTTTACT 811
||| | | ||||| | | || ||||| |||||| || || || ||||||||||||||| |
Sbjct 914 TGGCGATGCAAAAGA-GAATGAGAATTTACGAGCTT-GGTTCGTTACCACCGTTTTTA-T 970
Query 812 TG-TCTTCGCCGGAAACAT-AGCTCCGGT-AGATCACCGGTGGAACCAACATGGTTTAGG 868
|| | || ||||| || | ||||| | |||| |||||||||||||| ||||||||
Sbjct 971 TGGTTTTTGCCGGTTTGATTAAA-CCGGTTA-ATCATCGGTGGAACCAACACGGTTTAGG 1028
Query 869 AGGAGACAATTTCAGAGGACTGTGTCGAGATTTGCATCCAGGTCCAGTGAGTTTGTTGCA 928
||| || |||||||||||||||||| ||||| | ||||| ||||| |||||| |||||||
Sbjct 1029 AGGTGATAATTTCAGAGGACTGTGTAGAGATCTCCATCCTGGTCCGGTGAGTCTGTTGCA 1088
Query 929 TTGGAGTGGGAAAGGGAAGCCATGGG-TAAGG-TTAGACGATGGTCGACCTTGCCCGCTC 986
||||||||||||||| |||||||||| || || || || | |||||| ||||| || |
Sbjct 1089 TTGGAGTGGGAAAGGTAAGCCATGGGCTA-GGCTT-GATGCTGGTCGGCCTTGTCCTTTA 1146
Query 987 GATGCACTTTGGGTTCCATATGAT 1010
|| || ||||||| ||| ||||||
Sbjct 1147 GACGCGCTTTGGGCTCCGTATGAT 1170
> AT1G70090.1 | Symbols: GATL9, LGT8 | glucosyl transferase family
8 | chr1:26400790-26402397 FORWARD LENGTH=1608
Length=1608
Score = 159 bits (86), Expect = 4e-38
Identities = 227/293 (77%), Gaps = 18/293 (6%)
Strand=Plus/Plus
Query 672 TGTTACTTCAACACCGGAGTGATGGTTATCGAGCTAAAGAAATGGCGCGAAGGAGATTAT 731
||||| |||||||| || |||||||| || || ||| | |||| | |||||| | ||
Sbjct 879 TGTTATTTCAACACGGGTGTGATGGTGATGGATCTAGTTAGATGGAGAGAAGGAAACTAC 938
Query 732 ACGAGGAAGATCAT-AGA-GTGGATGGAGTTACA-AA-AACGGATA-AGAATCTACGAGT 786
| || ||| | | | | | |||||| || |||| || || || | ||||||||||| |
Sbjct 939 A-GA-GAAAAGCTTGAAACTTGGATGCAGATACAGAAGAA--GA-AGAGAATCTACGATT 993
Query 787 TAGGCTCTTTACCACCGTTT-TTACTTGTCTTCGCCGGAAACATAGCTCCGGTAGATCAC 845
| || ||||| || |||||| || ||||||||||| || ||| | | | | |||||
Sbjct 994 TGGGTTCTTTGCCTCCGTTTCTT-CTTGTCTTCGCAGGGAACGTTGAAGCAATTGATCAT 1052
Query 846 CGGTGGAACCAACATGGTTTAGGAGGAGACAAT-TTCAGAGG-ACTGTGTCGAG-ATTTG 902
|||||||||||||||||||||||||||||||| | | |||| | | ||| | | ||||
Sbjct 1053 AGGTGGAACCAACATGGTTTAGGAGGAGACAATGTAC-GAGGAAGT-TGTAG-GTCTTTG 1109
Query 903 CATCCAGGTCCAGTGAGTTTGTTGCATTGGAGTGGGAAAGGGAAGCCATGGGT 955
||| ||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1110 CATAAAGGACCAGTGAGTTTGTTGCATTGGAGTGGTAAAGGTAAGCCATGGGT 1162
> AT1G24170.1 | Symbols: GATL8, LGT9 | Nucleotide-diphospho-sugar
transferases superfamily protein | chr1:8557216-8558832 REVERSE
LENGTH=1617
Length=1617
Score = 141 bits (76), Expect = 1e-32
Identities = 267/354 (75%), Gaps = 34/354 (10%)
Strand=Plus/Plus
Query 678 TTCAACACCGGAGTGATGGTTATCGAGCTAAAGAAATGGCGCGAA-GGAGATTATACGAG 736
|||||||| ||||||||||| || || || | |||| | ||| ||| |||| | |||
Sbjct 957 TTCAACACAGGAGTGATGGTGATGGATCTTGTTAGATGGAGAGAAGGGA-ATTACA-GAG 1014
Query 737 -GAAGATCATAG-AGTGGATGGAGTTACA-AA-AACGGATAAGAATCTACGAGT-TAGGC 791
|||| | | || | |||||| | || || || || ||| ||||||||||| | | ||
Sbjct 1015 AGAAG-TTAGAGCAATGGATGCAATTGCAGAAGAA--GATGAGAATCTACGA-TCTTGGA 1070
Query 792 TCTTTACCACCGTTT-TTACTT-GTCTTCGCCGGAAACATAGCTCCGGTAGATCACCGGT 849
|| |||||||||||| || || || || || || || | | | | ||||| | |
Sbjct 1071 TCATTACCACCGTTTCTT--TTGGTGTTTGCGGGTAATGTTGAAGCTATTGATCATAGAT 1128
Query 850 GGAACCAACATGGTTTAGGAGGAGACAATTT-CAGAGGACTGT-GTCGAG--ATTTGCAT 905
||||||||||||||||||||||||||||| | | ||||| || |||| | ||| ||||
Sbjct 1129 GGAACCAACATGGTTTAGGAGGAGACAATATAC-GAGGAA-GTTGTCG-GTCATT-GCAT 1184
Query 906 CCAGGTCCAGTGAGTTTGTTGCATTGGAGTGGGAAAGGGAAGCCATGGGTAAGG-TT-A- 962
|| ||||| ||||| ||||||||||||||||| ||||| ||||||||||| || || |
Sbjct 1185 CCTGGTCCTGTGAGCTTGTTGCATTGGAGTGGTAAAGGTAAGCCATGGGTTAGACTTGAT 1244
Query 963 GACGATG-GTCGACCTTGCCCGCTCGATGCA-CTTTGGGTTCCATATGATTTGT 1014
|| || | | | ||||| ||| | ||| || ||||||| |||||||||||||
Sbjct 1245 GA-GAAGAG--G-CCTTGTCCGTTGGAT-CATCTTTGGGAGCCATATGATTTGT 1293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52208566800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5