BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937928

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G50800.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   784    0.0  


> AT3G50800.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: N-terminal protein myristoylation; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT5G66580.1); 
Has 249 Blast hits to 249 proteins in 14 species: 
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 
249; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 
| chr3:18882304-18882999 REVERSE LENGTH=696
Length=696

 Score =  784 bits (424),  Expect = 0.0
 Identities = 479/505 (95%), Gaps = 6/505 (1%)
 Strand=Plus/Plus

Query  1    TACAAAGAAGTACTAAAACAATGGGAGCTTGCGGTTCACGTGAATCTCGGAGAACGGAGA  60
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct  78   TACAAAGAAGTACTAAAACAATGGGAGCTTGCGCTTCACGTGAATCTCGGAGAACAGAGA  137

Query  61   CGGCGAAGCTGATATTACCAGACGGAACGTTACAAGAGTTTTCAACGCCGGTGAAAGTGT  120
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  138  CGGCGAAGCTGATATTACCAGACGGAACATTACAAGAGTTTTCAACGCCGGTGAAAGTGT  197

Query  121  GGCAGATTCTTCAAAAGAATCCTACGAGCTTTGTTTGTAACTCCGATGATATGGATTTCG  180
            ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct  198  GGCAGATTCTTCAAAAGAATCCTACAAGCTTTGTTTGTAACTCCGACGATATGGATTTCG  257

Query  181  ACGACGCCGTTTTAGCTGTTGCTGGCAGCGAAGATCTCCGGCCAGGAGAATTATACTTCG  240
            |||||||||||||||||||  |||| ||||| ||||| || ||||||||||| |||||||
Sbjct  258  ACGACGCCGTTTTAGCTGTCCCTGGAAGCGAGGATCTTCGACCAGGAGAATTGTACTTCG  317

Query  241  TTTTACCGTTGACATGGCTTAATCATCCATTAAGAGCAGATGAAATGGCAGCTTTAGCGG  300
            ||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct  318  TTTTACCATTAACATGGCTTAATCATCCATTGAGAGCAGATGAAATGGCGGCTTTAGCGG  377

Query  301  TTAAAGCAAGCTCTGCGCTTGCGAAAAGCGGTGGAGGCGGTTTGAGTTACAACGATGAAG  360
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  378  TTAAAGCAAGCTCTGCGCTTGCGAAAAGCGGTGGAGGAGGTTTGAGTTACAACGATGAAG  437

Query  361  ATGTTGGTGAGTGTAGAGTTAAAAGAGTTAAAAGAAATGGTTGCGGCGGAAGAGGTTgtg  420
            ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct  438  ATGTTGGTGAGTGTAGAGTTAGAAGAGTTAAAAGAAACGGTTGCGGCGGAAGAGGTTGTG  497

Query  421  gtggtggtggtggtggtAAAGGGAGGAGAAAGTTTACGGCGGAGTTGAGTTCAATAGCTG  480
            |||||||||||      ||||||||||||||||| |||||||||||||||||||||||||
Sbjct  498  GTGGTGGTGGT------AAAGGGAGGAGAAAGTTCACGGCGGAGTTGAGTTCAATAGCTG  551

Query  481  AGTAGAGGGGTTAAATTGGTTAGTC  505
            |||||||||||||||||||||||||
Sbjct  552  AGTAGAGGGGTTAAATTGGTTAGTC  576



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24112390560


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5