BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937942

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G50900.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   579    8e-165


> AT3G50900.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G66490.1); 
Has 45 Blast hits to 45 proteins in 7 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:18918019-18918618 
FORWARD LENGTH=600
Length=600

 Score =  579 bits (313),  Expect = 8e-165
 Identities = 365/390 (94%), Gaps = 4/390 (1%)
 Strand=Plus/Plus

Query  1    TTTTTTCCACACCATACCGCACCATGTTTAGAGCCATGAGCACTAGGAAAATCCACGGTG  60
            |||||||||||||| | | |||||||||||||||||||||||| ||||||||||| ||||
Sbjct  81   TTTTTTCCACACCACATCACACCATGTTTAGAGCCATGAGCACAAGGAAAATCCATGGTG  140

Query  61   GCTACGAAAAGCTCGGCGACGAAGAAGCGAGACTGAAGAGGGTCTCTAGCGTTCCAGCGA  120
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct  141  GCTACGAAAAGCTCGGCGATGAAGAAGCGAGACTGAAGAGGGTCTCTAGCGTTCCGGCTA  200

Query  121  GTGTTTATGGTCAATCAAGAAACCCTATTCAAG-AGTTGAAGAAGACACCGACGGTGAAA  179
            ||||||||||||| |||||||||||  |||||| || |||||||||||||||| | ||||
Sbjct  201  GTGTTTATGGTCATTCAAGAAACCCGGTTCAAGAAG-TGAAGAAGACACCGACAGCGAAA  259

Query  180  CCAACCGGTGGTTCTGTTCATCCTTTGTTTAGTTTCTTTGACGTTCATTTTCAAAGGAAG  239
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  260  CCAACCGGTGGTTCTGTTCATCCTTTGTTTAGTTTCTTTGACGTTCATTTTCAAAGAAAG  319

Query  240  AAGAAGAAGACGACGAAGAAAAAGAGTTTAGCGACGGCGAAACCGGAGTTTGCTAGGTAT  299
            |||||||| ||| ||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct  320  AAGAAGAATACGGCGAAGAAGAAGAGTTTAGCAACGGCGAAACCAGAGTTTGCTAGGTAT  379

Query  300  ATGGAGTATGTGA-AGGAAGGAGGTGTGTGGGATCCGAGTTCTAACGCACCTGCGATTCA  358
            ||||||||||||| || |||||||||||||||||||||||||||||||||| | ||||||
Sbjct  380  ATGGAGTATGTGAGAG-AAGGAGGTGTGTGGGATCCGAGTTCTAACGCACCAGTGATTCA  438

Query  359  TTACAGATAGATTCGTCAAGGAAAATGAAT  388
            ||||||||||||||||||||||||||||||
Sbjct  439  TTACAGATAGATTCGTCAAGGAAAATGAAT  468



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18297460636


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5